# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2f07A 197 4.67e-24 3bhqA 211 4.83e-24 1vi0A 206 6.41e-24 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 6.73e-24 3bruA 222 1.39e-23 1rktA 205 1.74e-23 a.4.1.9,a.121.1.1 97623,97624 1pb6A 212 1.89e-23 a.4.1.9,a.121.1.1 88017,88018 3bcgA 215 1.91e-23 2g7sA 194 1.97e-23 a.4.1.9,a.121.1.1 134737,134738 2uxuA 210 2.03e-23 2id6A 202 2.06e-23 2ibdA 204 4.45e-23 3ccyA 203 4.67e-23 2rasA 212 4.93e-23 1zkgA 212 5.19e-23 a.4.1.9,a.121.1.1 125194,125195 3cwrA 208 5.67e-23 3crjA 199 7.79e-23 2hyjA 200 9.82e-23 1z77A 200 1.04e-22 a.4.1.9,a.121.1.1 124588,124589 2g3bA 208 1.54e-22 a.4.1.9,a.121.1.1 134558,134559 1t56A 216 1.76e-22 a.4.1.9,a.121.1.1 106428,106429 2qtqA 213 2.43e-22 2hytA 197 2.49e-22 2i10A 202 2.50e-22 a.4.1.9,a.121.1.1 136960,136961 2iekA 200 2.50e-22 2qcoA 210 3.05e-22 2jj7A 186 3.90e-22 2nx4A 194 4.69e-22 2genA 197 4.81e-22 a.4.1.9,a.121.1.1 135062,135063 2fx0A 201 5.01e-22 a.4.1.9,a.121.1.1 134269,134270 2iaiA 230 7.40e-22 1qvtA 194 7.82e-22 a.4.1.9,a.121.1.1 104602,104603 2raeA 207 8.00e-22 2dg7A 195 9.00e-22 2fq4A 192 9.25e-22 a.4.1.9,a.121.1.1 133937,133938 3cjdA 198 1.04e-21 2of7A 260 1.07e-21 2fbqA 235 1.13e-21 a.4.1.9,a.121.1.1 133256,133257 1ui5A 215 1.38e-21 a.4.1.9,a.121.1.1 107856,107857 2zb9A 214 1.98e-21 1jt6A 188 2.40e-21 a.4.1.9,a.121.1.1 67247,67248 3cdlA 203 2.63e-21 2yveA 185 5.06e-21 2np5A 203 7.35e-21 a.4.1.9,a.121.1.1 138424,138425 3b81A 203 1.15e-20 3colA 196 1.25e-20 3bjbA 207 1.39e-20 2dg8A 193 1.44e-20 2eh3A 179 1.67e-20 2q24A 194 1.77e-20 2guhA 214 2.02e-20 3c2bA 221 3.47e-20 2qibA 231 3.51e-20 2d6yA 202 5.69e-20 a.4.1.9,a.121.1.1 131313,131314 2o7tA 199 6.47e-20 2fd5A 180 8.77e-20 a.4.1.9,a.121.1.1 133291,133292 1sgmA 191 9.18e-20 a.4.1.9,a.121.1.1 105537,105538 2hkuA 215 1.14e-19 3bniA 229 1.22e-19 1v7bA 185 1.78e-19 a.4.1.9,a.121.1.1 119861,119862 1t33A 224 3.25e-19 a.4.1.9,a.121.1.1 106295,106296 2qwtA 196 3.67e-19 2o7oA 207 3.70e-19 a.4.1.9,a.121.1.1 138930,138931 2rekA 199 4.09e-19 3bqyA 209 4.12e-19 1a6i 217 4.99e-19 1zk8A 183 7.76e-19 a.4.1.9,a.121.1.1 125177,125178 2gfnA 209 8.93e-19 a.4.1.9,a.121.1.1 135101,135102 2iu5A 195 1.06e-18 2vprA 207 1.53e-18 2oi8A 216 6.58e-18 2qkoA 215 9.38e-18 2zcmA 192 1.32e-17 1z0xA 220 1.93e-17 a.4.1.9,a.121.1.1 124334,124335 2g7lA 243 3.18e-16 a.4.1.9,a.121.1.1 134734,134735 2optA 234 4.54e-16 2oerA 214 6.26e-16 2tct 207 1.03e-15 2id3A 225 5.76e-15 a.4.1.9,a.121.1.1 137261,137262 2hxoA 237 4.79e-14 2g7gA 213 2.21e-10 a.4.1.9,a.121.1.1 134732,134733 2oxoA 103 1.411 1ft9A 222 3.253 a.4.5.4,b.82.3.1 16107,28131 1pdnC 128 7.668 a.4.1.5 16047 1on2A 142 8.919 a.4.5.24,a.76.1.1 87103,87104 2fmyA 220 8.998 2cgpA 210 9.737 a.4.5.4,b.82.3.2 16102,28141 2ev0A 142 10.58 a.4.5.24,a.76.1.1 132413,132414 6paxA 133 12.36 a.4.1.5,a.4.1.5 64758,64759 1gseA 221 12.53 a.45.1.1,c.47.1.5 17667,32961 1i6xA 209 12.58 a.4.5.4,b.82.3.2 83673,83674 3bbyA 215 12.75 1gwcA 230 13.61 a.45.1.1,c.47.1.5 70660,70661 1ho8A 480 14.32 a.118.1.9 61107 1vf1A 229 20.61 2gauA 232 22.01 a.4.5.4,b.82.3.2 134894,134895 1m12A 84 22.85 a.64.1.1 84745 2zcwA 202 24.48 3d0cA 314 24.75 1fx3A 169 25.06 d.33.1.1 38524 2pg4A 95 25.85 1oqyA 368 27.25 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1xrsB 262 28.52 c.23.6.1,d.230.4.1 115884,115885 2h6bA 250 29.01 2bvyA 475 29.64 b.1.18.2,c.1.8.3 129301,129302 2g3vA 208 30.15 1gulA 222 31.66 a.45.1.1,c.47.1.5 17675,32969 1a5t 334 33.13 2dt5A 211 33.30 a.4.5.38,c.2.1.12 131708,131709 1y5eA 169 33.49 c.57.1.1 122632 2sttA 96 33.56 a.4.5.21 16163 1c4zA 358 34.00 d.148.1.1 41766 2bjcA 62 34.70 a.35.1.5 128620 1lccA 51 35.80 a.35.1.5 17110 1k3yA 221 36.09 a.45.1.1,c.47.1.5 77245,77246 1hw5A 210 36.11 a.4.5.4,b.82.3.2 16098,28137 1oe8A 211 37.02 a.45.1.1,c.47.1.5 86905,86906 2f6hX 419 37.79 2cohA 202 39.25 a.4.5.4,b.82.3.2 130677,130678 1m0uA 249 39.77 a.45.1.1,c.47.1.5 78359,78360 2pjpA 121 39.83 2osxA 481 39.96 1c0wA 225 43.29 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 1omiA 248 43.82 b.82.3.3,a.4.5.4 87079,87080 2jn6A 97 44.42 1b48A 221 48.43 a.45.1.1,c.47.1.5 17703,32997 1yn9A 169 48.94 1jr3A 373 49.42 a.80.1.1,c.37.1.20 63245,63246 1cjgA 62 49.47 a.35.1.5 17112 1bupA 386 50.45 c.55.1.1,c.55.1.1 33377,33378 1qynA 153 50.71 d.33.1.1 96597 2d1hA 109 52.59 a.4.5.50 131125 2obnA 349 52.96 2q0zX 339 55.10 1tfjA 219 56.64 2scpA 174 58.25 a.39.1.5 17256 1f3aA 222 58.79 a.45.1.1,c.47.1.5 17701,32995 1g6nA 210 59.46 a.4.5.4,b.82.3.2 16100,28139 1mkzA 172 60.20 c.57.1.1 84998 2e5aA 347 61.34 1j3wA 163 62.18 d.110.7.1 90833 1lea 84 63.06 1vtmP 158 63.94 a.24.5.1 16587 2gsqA 202 67.08 a.45.1.1,c.47.1.5 17715,33009 1j0tA 78 67.92 a.163.1.1 77051 2de3A 365 71.12 2vl6A 268 72.37 2bl0B 145 73.06 1y7qA 98 73.40 a.28.3.2 122714 2fjlA 150 74.55 b.55.1.1 133611 1oktA 211 75.21 a.45.1.1,c.47.1.5 93272,93273 2dm9A 198 76.44 1t9mA 214 77.54 b.45.1.1 112364 1p5tA 127 78.90 b.55.1.2 94148 1ji6A 589 80.61 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 2r55A 231 84.91 2rfgA 297 86.62 2javA 279 88.11 d.144.1.7 138243 8tlnE 316 88.58 d.92.1.2 59075 1sfxA 109 88.64 a.4.5.50 105505 1bi0 226 88.85 1pveA 72 89.07 a.189.1.1 104322 1jyaA 130 89.61 d.198.1.1 67453 1ei7A 158 89.66 a.24.5.1 16584 1vkjA 285 89.88 c.37.1.5 108666