# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2uxuA 210 9.04e-15 1pb6A 212 9.39e-15 a.4.1.9,a.121.1.1 88017,88018 1t56A 216 1.34e-14 a.4.1.9,a.121.1.1 106428,106429 1vi0A 206 1.41e-14 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 1.54e-14 3bruA 222 2.12e-14 3bhqA 211 2.20e-14 2ibdA 204 9.55e-14 2g7sA 194 1.17e-13 a.4.1.9,a.121.1.1 134737,134738 1rktA 205 1.17e-13 a.4.1.9,a.121.1.1 97623,97624 1z77A 200 1.31e-13 a.4.1.9,a.121.1.1 124588,124589 2hyjA 200 1.71e-13 3cdlA 203 1.75e-13 2iaiA 230 2.72e-13 3crjA 199 3.20e-13 3bcgA 215 3.56e-13 2id6A 202 3.73e-13 2qtqA 213 4.82e-13 2fq4A 192 4.91e-13 a.4.1.9,a.121.1.1 133937,133938 2f07A 197 4.94e-13 1qvtA 194 6.05e-13 a.4.1.9,a.121.1.1 104602,104603 3ccyA 203 8.15e-13 1zkgA 212 1.62e-12 a.4.1.9,a.121.1.1 125194,125195 2iekA 200 1.74e-12 2zb9A 214 2.01e-12 1jt6A 188 2.11e-12 a.4.1.9,a.121.1.1 67247,67248 3cjdA 198 3.09e-12 2genA 197 3.55e-12 a.4.1.9,a.121.1.1 135062,135063 3cwrA 208 4.50e-12 2nx4A 194 6.75e-12 2fx0A 201 8.42e-12 a.4.1.9,a.121.1.1 134269,134270 2hytA 197 1.11e-11 2rasA 212 1.52e-11 3b81A 203 1.85e-11 3c2bA 221 2.35e-11 2jj7A 186 2.48e-11 3colA 196 2.55e-11 2g3bA 208 3.30e-11 a.4.1.9,a.121.1.1 134558,134559 1ui5A 215 4.07e-11 a.4.1.9,a.121.1.1 107856,107857 2qibA 231 4.15e-11 2o7tA 199 7.38e-11 2i10A 202 1.33e-10 a.4.1.9,a.121.1.1 136960,136961 1sgmA 191 1.50e-10 a.4.1.9,a.121.1.1 105537,105538 2id3A 225 1.55e-10 a.4.1.9,a.121.1.1 137261,137262 2d6yA 202 1.59e-10 a.4.1.9,a.121.1.1 131313,131314 2hkuA 215 1.90e-10 2rekA 199 2.37e-10 2qwtA 196 2.50e-10 2qcoA 210 3.18e-10 2q24A 194 3.82e-10 2np5A 203 5.44e-10 a.4.1.9,a.121.1.1 138424,138425 2dg7A 195 5.71e-10 2zcmA 192 7.19e-10 1t33A 224 1.44e-09 a.4.1.9,a.121.1.1 106295,106296 1zk8A 183 2.48e-09 a.4.1.9,a.121.1.1 125177,125178 2eh3A 179 3.33e-09 2fbqA 235 4.77e-09 a.4.1.9,a.121.1.1 133256,133257 2of7A 260 6.63e-09 2oi8A 216 6.94e-09 3bniA 229 6.99e-09 3bjbA 207 9.33e-09 2dg8A 193 9.81e-09 2guhA 214 1.68e-08 2tct 207 1.71e-08 1v7bA 185 1.89e-08 a.4.1.9,a.121.1.1 119861,119862 2raeA 207 2.06e-08 3bqyA 209 2.16e-08 2g7lA 243 2.17e-08 a.4.1.9,a.121.1.1 134734,134735 2gfnA 209 2.94e-08 a.4.1.9,a.121.1.1 135101,135102 1z0xA 220 4.53e-08 a.4.1.9,a.121.1.1 124334,124335 2o7oA 207 9.33e-08 a.4.1.9,a.121.1.1 138930,138931 1a6i 217 1.74e-07 2vprA 207 1.81e-07 2optA 234 1.92e-07 2iu5A 195 2.14e-07 2fd5A 180 2.96e-07 a.4.1.9,a.121.1.1 133291,133292 2yveA 185 6.45e-07 2qkoA 215 1.27e-06 2g7gA 213 1.89e-06 a.4.1.9,a.121.1.1 134732,134733 2hxoA 237 3.51e-06 2oerA 214 5.19e-05 2fdvA 476 2.517 3c6gA 479 3.783 1d3uB 201 3.957 a.74.1.2,a.74.1.2 18386,18387 1aisB 200 4.366 a.74.1.2,a.74.1.2 18384,18385 1sh5A 245 4.747 a.40.1.1,a.40.1.1 105543,105544 1ea5A 537 5.371 c.69.1.1 34592 2d2mC 147 6.457 2v9dA 343 7.087 1c9bA 207 8.793 a.74.1.2,a.74.1.2 18372,18373 1yzfA 195 10.19 c.23.10.5 124275 2ondA 308 10.35 1l5oA 356 10.69 c.39.1.1 77711 3c8mA 331 13.61 2q02A 272 14.55 1hg5A 289 15.33 a.7.8.2,a.118.9.3 90360,90361 2r91A 286 15.37 1b48A 221 16.31 a.45.1.1,c.47.1.5 17703,32997 1rt8A 513 16.49 a.40.1.1 105095 1glqA 209 17.00 a.45.1.1,c.47.1.5 17588,32882 1d0vA 356 17.40 c.39.1.1 32476 1pbvA 195 18.38 a.118.3.1 19179 2nuwA 288 18.66 1lvaA 258 18.98 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1gwcA 230 19.66 a.45.1.1,c.47.1.5 70660,70661 1gp6A 356 20.94 b.82.2.1 65441 2gsqA 202 21.38 a.45.1.1,c.47.1.5 17715,33009 1o5kA 306 22.77 c.1.10.1 92504 2bfdA 400 22.90 2hi4A 495 23.79 1fw1A 216 24.17 a.45.1.1,c.47.1.5 60051,60052 3bbyA 215 24.76 1r8sE 203 25.59 a.118.3.1 97248 1j33A 335 26.21 c.39.1.1 77069 2d2mA 140 26.30 1r9oA 477 26.52 a.104.1.1 104878 1qagA 226 26.93 a.40.1.1,a.40.1.1 17400,17401 1g3jA 532 27.00 a.118.1.1 19114 6paxA 133 27.19 a.4.1.5,a.4.1.5 64758,64759 1v1rA 400 27.24 c.36.1.11 108272 1f74A 293 27.32 c.1.10.1 29079 2hyvA 308 28.03 2vr4A 846 28.27 3cnyA 301 28.35 1oktA 211 28.53 a.45.1.1,c.47.1.5 93272,93273 1r8mE 203 29.66 a.118.3.1 97242 1n2aA 201 29.88 a.45.1.1,c.47.1.5 91553,91554 2hnhA 910 30.07 2gdrA 202 31.25 1jr3A 373 32.31 a.80.1.1,c.37.1.20 63245,63246 2je8A 848 32.68 2aawA 222 33.85 a.45.1.1,c.47.1.5 126496,126497 1efaA 333 34.53 a.35.1.5,c.93.1.1 17106,35691 2pbyA 308 34.59 1fdyA 297 35.54 c.1.10.1 29071 1pbv 195 36.38 2ejwA 332 36.67 2vjxA 846 37.30 2p74A 263 37.91 2q0zX 339 39.58 1eg3A 261 40.05 a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 2on5A 206 40.28 1hf8A 289 41.87 a.7.8.2,a.118.9.3 90354,90355 1gulA 222 43.48 a.45.1.1,c.47.1.5 17675,32969 2d2sA 235 44.15 a.118.17.2 131188 1tlqA 189 44.56 a.195.1.1 107134 1w3iA 293 44.57 c.1.10.1 109152 1volA 204 44.76 a.74.1.2,a.74.1.2 18370,18371 2pm7A 399 44.88 1hl2A 297 44.97 c.1.10.1 83581 1ihp 438 47.00 1i2sA 282 48.20 e.3.1.1 71104 2yr1A 257 48.31 1idrA 136 48.49 a.1.1.1 62301 1on2A 142 48.90 a.4.5.24,a.76.1.1 87103,87104 1ur4A 399 49.07 c.1.8.3 113402 2pvqA 201 49.14 2gkmA 136 50.88 3c86A 328 51.17 3sdhA 146 51.54 a.1.1.2 14984 3bct 457 51.63 1nhyA 219 51.86 a.45.1.1,c.47.1.5 80520,80521 3bq9A 460 51.90 2pgeA 377 54.46 1nal1 297 55.62 1eywA 331 55.79 c.1.9.3 29057 1to3A 304 56.22 c.1.10.1 107161 1tu7A 208 58.20 a.45.1.1,c.47.1.5 112653,112654 1f3aA 222 58.21 a.45.1.1,c.47.1.5 17701,32995 1oqyA 368 59.01 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1wdcC 156 59.17 a.39.1.5 17317 1b71A 191 59.82 a.25.1.1,g.41.5.1 16647,45246 2ovkC 159 61.44 3b4uA 294 61.81 1g7oA 215 63.31 a.45.1.1,c.47.1.5 60332,60333 1umdA 367 63.99 c.36.1.11 99599 1hm6A 346 64.51 a.65.1.1 18147 2cz2A 223 65.17 1j8yF 297 66.56 a.24.13.1,c.37.1.10 62747,62748 1pgtA 210 67.76 a.45.1.1,c.47.1.5 17515,32809 6gsvA 217 70.94 a.45.1.1,c.47.1.5 17633,32925 2ivxA 257 71.04 1j8mF 297 72.44 a.24.13.1,c.37.1.10 62742,62743 2glcA 342 72.78 1ee4A 423 74.17 a.118.1.1 19128 2btdA 210 74.66 1wsuA 124 75.73 a.4.5.35,a.4.5.35 121245,121246 1m0uA 249 76.61 a.45.1.1,c.47.1.5 78359,78360 2hs5A 239 76.86 2bwjA 199 77.51 3d0cA 314 78.13 3cj1A 456 79.32 1k6kA 143 79.85 a.174.1.1 77274 1yljA 263 80.62 1ku1A 230 83.36 a.118.3.1 72996 1b4pA 217 83.49 a.45.1.1,c.47.1.5 83158,83159 2ehhA 294 85.20 1px5A 349 85.43 a.160.1.2,d.218.1.6 95277,95278 1bi0 226 85.53 1yuwA 554 86.96 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 1nigA 152 88.54 a.25.2.1 85740 1lbkA 208 89.56 a.45.1.1,c.47.1.5 73809,73810 1dlyA 164 89.69 a.1.1.1 14983 1jpnA 296 89.79 a.24.13.1,c.37.1.10 67039,67040