# List of top-scoring protein chains for T0454.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 1.19e-21 a.4.1.9,a.121.1.1 100720,100721 3bcgA 215 1.36e-19 1pb6A 212 1.72e-19 a.4.1.9,a.121.1.1 88017,88018 3cdlA 203 3.36e-19 2uxuA 210 6.04e-19 3bruA 222 1.26e-18 2ibdA 204 3.65e-18 2f07A 197 8.40e-18 2iaiA 230 1.09e-17 2hytA 197 3.23e-17 2id6A 202 3.93e-17 1zkgA 212 3.93e-17 a.4.1.9,a.121.1.1 125194,125195 2iekA 200 3.96e-17 3bhqA 211 4.58e-17 2genA 197 5.22e-17 a.4.1.9,a.121.1.1 135062,135063 2g7sA 194 8.29e-17 a.4.1.9,a.121.1.1 134737,134738 3ccyA 203 1.56e-16 2i10A 202 1.90e-16 a.4.1.9,a.121.1.1 136960,136961 2eh3A 179 3.50e-16 2gfnA 209 4.23e-16 a.4.1.9,a.121.1.1 135101,135102 3c07A 273 9.51e-16 2nx4A 194 9.58e-16 2g3bA 208 9.90e-16 a.4.1.9,a.121.1.1 134558,134559 2q24A 194 1.26e-15 1ui5A 215 1.42e-15 a.4.1.9,a.121.1.1 107856,107857 2pbxA 203 1.67e-15 3crjA 199 1.97e-15 2d6yA 202 2.83e-15 a.4.1.9,a.121.1.1 131313,131314 2fx0A 201 3.02e-15 a.4.1.9,a.121.1.1 134269,134270 1u9nA 236 3.36e-15 a.4.1.9,a.121.1.1 113246,113247 1t56A 216 3.37e-15 a.4.1.9,a.121.1.1 106428,106429 2qwtA 196 6.98e-15 2qibA 231 7.52e-15 2fbqA 235 7.53e-15 a.4.1.9,a.121.1.1 133256,133257 2of7A 260 7.99e-15 1qvtA 194 8.30e-15 a.4.1.9,a.121.1.1 104602,104603 1sgmA 191 8.68e-15 a.4.1.9,a.121.1.1 105537,105538 1jt6A 188 8.71e-15 a.4.1.9,a.121.1.1 67247,67248 1rkwA 194 9.08e-15 a.4.1.9,a.121.1.1 104967,104968 1rktA 205 9.27e-15 a.4.1.9,a.121.1.1 97623,97624 2fq4A 192 1.37e-14 a.4.1.9,a.121.1.1 133937,133938 2jj7A 186 2.81e-14 2raeA 207 3.40e-14 2zcmA 192 4.01e-14 3cjdA 198 4.86e-14 2zcnA 192 6.67e-14 2np5A 203 9.20e-14 a.4.1.9,a.121.1.1 138424,138425 2qcoA 210 1.22e-13 2hyjA 200 1.29e-13 2qtqA 213 1.40e-13 2zb9A 214 1.53e-13 2rekA 199 5.35e-13 3bniA 229 5.43e-13 2guhA 214 8.21e-13 2np3A 212 1.11e-12 a.4.1.9,a.121.1.1 138420,138421 3bjbA 207 1.12e-12 2oerA 214 1.50e-12 3b81A 203 1.66e-12 2id3A 225 2.33e-12 a.4.1.9,a.121.1.1 137261,137262 3cwrA 208 2.92e-12 2rasA 212 5.50e-12 2pz9A 226 1.50e-11 3c2bA 221 1.71e-11 3colA 196 1.73e-11 2dg8A 193 1.92e-11 2fd5A 180 4.75e-11 a.4.1.9,a.121.1.1 133291,133292 2dg7A 195 7.03e-11 1zk8A 183 9.83e-11 a.4.1.9,a.121.1.1 125177,125178 2ns7A 208 1.11e-10 2dh0A 183 1.25e-10 2yveA 185 1.38e-10 1v7bA 185 1.39e-10 a.4.1.9,a.121.1.1 119861,119862 2yvhA 177 1.48e-10 1t33A 224 1.57e-10 a.4.1.9,a.121.1.1 106295,106296 3bqyA 209 1.62e-10 2o7oA 207 1.86e-10 a.4.1.9,a.121.1.1 138930,138931 2tctA 207 2.21e-10 a.4.1.9,a.121.1.1 16063,19240 2trtA 217 2.36e-10 a.4.1.9,a.121.1.1 16064,19241 1qpiA 203 2.73e-10 a.4.1.9,a.121.1.1 16072,19249 2oi8A 216 2.92e-10 1a6iA 217 1.02e-09 a.4.1.9,a.121.1.1 16066,19243 2hxiA 241 1.06e-09 1z0xA 220 1.19e-09 a.4.1.9,a.121.1.1 124334,124335 2qkoA 215 1.65e-09 2vprA 207 1.87e-09 2hkuA 215 1.95e-09 2o7tA 199 4.75e-09 2g7lA 243 3.47e-08 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 5.86e-08 2optA 234 1.82e-07 2iu5A 195 4.08e-07 2g7gA 213 5.40e-07 a.4.1.9,a.121.1.1 134732,134733 2e85A 159 4.169 2i8lA 156 4.273 1zt2A 330 10.04 d.264.1.1 125624 1pveA 72 10.05 a.189.1.1 104322 2pg4A 95 10.71 1hlvA 131 14.63 a.4.1.7,a.4.1.7 65854,65855 2zaiA 497 15.82 1pruA 56 16.50 a.35.1.5 17104 1pufB 73 18.71 a.4.1.1 95132 1b72B 87 20.25 a.4.1.1 16001 1du6A 64 21.78 a.4.1.1 16002 1b8iB 63 25.53 a.4.1.1 16011 1x0uA 522 27.25 1q1vA 70 36.35 a.159.4.1 104479 1mhyD 521 36.75 a.25.1.2 16780 1lfuP 82 38.67 a.4.1.1 77939 1j4zA 547 41.61 a.129.1.1,c.8.5.1,d.56.1.1 90838,90839,90840 1kp8A 547 42.53 a.129.1.1,c.8.5.1,d.56.1.1 84414,84415,84416 2eu1A 548 42.74 1svtA 524 44.36 3cjeA 167 44.41 1sx3A 525 44.41 1ss8A 524 44.43 1xckA 547 44.65 1gr5A 547 44.68 i.16.1.1 65478 3c7nA 668 48.51 2qxlA 658 48.57 2yyvA 227 49.68 1uscA 178 50.41 b.45.1.2 99860 2dvyA 226 50.98 1kftA 78 53.50 a.60.2.3 77375 2bjcA 62 54.59 a.35.1.5 128620 2qsjA 154 60.28 1s7oA 113 60.57 a.4.13.3 105354 1uxcA 65 62.18 a.35.1.5 17119 1grlA 548 62.72 a.129.1.1,c.8.5.1,d.56.1.1 19487,30816,38935 2e60A 101 63.19 1oelA 547 63.33 a.129.1.1,c.8.5.1,d.56.1.1 19452,30781,38900 1y60A 169 68.18 d.14.1.12 116489 1dk7A 146 70.01 c.8.5.1 30772 2fdpA 388 70.40 b.50.1.2 133316 2g94A 389 70.64 b.50.1.2 134790 1fknA 391 70.72 b.50.1.2 26879 2qp8A 395 70.91 3buhA 409 71.17 2iqgA 406 71.26 b.50.1.2 137588 2q15A 385 72.18 2q11A 388 72.50 2vijA 392 72.89 1ym2A 402 72.91 b.50.1.2 123679 1ym4A 408 73.18 b.50.1.2 123682 2ohqA 402 73.59 b.50.1.2 139075 2f4mB 61 73.85 a.189.1.1 132931 2zhvA 411 74.22 1w50A 411 74.54 b.50.1.2 109173 3ckpA 412 74.58 3ctpA 330 74.75 2rgxA 206 75.19 1jonA 155 75.20 c.8.5.1 30780 1lccA 51 78.34 a.35.1.5 17110 2o5hA 136 79.53 3fruA 269 85.41 b.1.1.2,d.19.1.1 20657,38150 2ph8A 405 86.36 2pjkA 178 86.37 2qzlA 411 89.54 2e0zA 345 89.90