# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 5.41e-22 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 5.47e-22 2uxuA 210 6.87e-22 2ibdA 204 1.32e-21 1t56A 216 1.43e-21 a.4.1.9,a.121.1.1 106428,106429 1rktA 205 2.00e-21 a.4.1.9,a.121.1.1 97623,97624 3ccyA 203 3.06e-21 2hyjA 200 3.38e-21 1qvtA 194 3.46e-21 a.4.1.9,a.121.1.1 104602,104603 2g7sA 194 3.51e-21 a.4.1.9,a.121.1.1 134737,134738 2qtqA 213 3.52e-21 1jt6A 188 3.61e-21 a.4.1.9,a.121.1.1 67247,67248 3bhqA 211 6.56e-21 2f07A 197 8.24e-21 2fq4A 192 8.97e-21 a.4.1.9,a.121.1.1 133937,133938 3bruA 222 1.14e-20 3crjA 199 1.26e-20 3c2bA 221 1.30e-20 1zkgA 212 1.33e-20 a.4.1.9,a.121.1.1 125194,125195 3cdlA 203 1.39e-20 2rasA 212 1.41e-20 1ui5A 215 1.43e-20 a.4.1.9,a.121.1.1 107856,107857 1pb6A 212 1.76e-20 a.4.1.9,a.121.1.1 88017,88018 1z77A 200 1.77e-20 a.4.1.9,a.121.1.1 124588,124589 2genA 197 1.85e-20 a.4.1.9,a.121.1.1 135062,135063 2id6A 202 2.06e-20 2iekA 200 2.14e-20 3bcgA 215 2.21e-20 3cwrA 208 2.52e-20 2raeA 207 2.64e-20 2zb9A 214 3.92e-20 2nx4A 194 5.11e-20 2hytA 197 7.33e-20 2qcoA 210 8.62e-20 2gfnA 209 1.12e-19 a.4.1.9,a.121.1.1 135101,135102 2o7tA 199 1.24e-19 2dg7A 195 1.32e-19 2iaiA 230 1.46e-19 2qibA 231 1.59e-19 2zcmA 192 2.28e-19 2jj7A 186 2.28e-19 2id3A 225 3.92e-19 a.4.1.9,a.121.1.1 137261,137262 2qkoA 215 4.12e-19 2i10A 202 4.63e-19 a.4.1.9,a.121.1.1 136960,136961 3b81A 203 5.54e-19 2g3bA 208 5.66e-19 a.4.1.9,a.121.1.1 134558,134559 1zk8A 183 5.93e-19 a.4.1.9,a.121.1.1 125177,125178 2tct 207 6.85e-19 1sgmA 191 8.57e-19 a.4.1.9,a.121.1.1 105537,105538 2d6yA 202 1.28e-18 a.4.1.9,a.121.1.1 131313,131314 3cjdA 198 1.57e-18 2optA 234 1.84e-18 2fbqA 235 1.88e-18 a.4.1.9,a.121.1.1 133256,133257 2np5A 203 1.94e-18 a.4.1.9,a.121.1.1 138424,138425 2o7oA 207 1.95e-18 a.4.1.9,a.121.1.1 138930,138931 3bqyA 209 1.96e-18 2fx0A 201 2.52e-18 a.4.1.9,a.121.1.1 134269,134270 3bniA 229 2.65e-18 2rekA 199 2.73e-18 3colA 196 3.01e-18 2hkuA 215 4.36e-18 3bjbA 207 5.07e-18 2q24A 194 6.04e-18 2of7A 260 6.32e-18 2oerA 214 7.70e-18 2iu5A 195 9.18e-18 2fd5A 180 1.24e-17 a.4.1.9,a.121.1.1 133291,133292 2g7gA 213 1.43e-17 a.4.1.9,a.121.1.1 134732,134733 1a6i 217 2.22e-17 2oi8A 216 2.25e-17 2guhA 214 3.38e-17 1z0xA 220 4.13e-17 a.4.1.9,a.121.1.1 124334,124335 2dg8A 193 4.43e-17 2yveA 185 4.64e-17 2vprA 207 4.86e-17 2qwtA 196 5.04e-17 2eh3A 179 7.17e-17 1v7bA 185 1.57e-16 a.4.1.9,a.121.1.1 119861,119862 2hxoA 237 2.51e-16 1t33A 224 8.10e-16 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 1.17e-14 a.4.1.9,a.121.1.1 134734,134735 2jn6A 97 0.3333 1hlvA 131 0.4651 a.4.1.7,a.4.1.7 65854,65855 2dt5A 211 0.7731 a.4.5.38,c.2.1.12 131708,131709 2ev0A 142 1.375 a.4.5.24,a.76.1.1 132413,132414 2rn7A 108 2.038 2qq9A 226 2.044 2pg4A 95 4.336 1xsvA 113 4.714 a.4.13.3 116003 1xcbA 211 4.939 a.4.5.38,c.2.1.12 109552,109553 1bl0A 129 6.143 a.4.1.8,a.4.1.8 16053,16054 2v9vA 135 6.640 1zcaA 359 9.112 a.66.1.1,c.37.1.8 124897,124898 1wsuA 124 9.637 a.4.5.35,a.4.5.35 121245,121246 3co4A 312 9.817 2ahrA 259 10.36 a.100.1.10,c.2.1.6 126775,126776 1l3lA 234 13.54 a.4.6.2,d.110.5.1 73541,73542 1wa5B 530 14.84 a.118.1.1 114432 1fseA 74 15.05 a.4.6.2 60000 1z5hA 780 15.36 1zljA 78 15.60 1tu7A 208 16.00 a.45.1.1,c.47.1.5 112653,112654 1resA 43 16.91 a.4.1.2 16023 1je8A 82 19.15 a.4.6.2 77108 1ijbA 202 19.17 c.62.1.1 71229 2fnaA 357 19.79 a.4.5.11,c.37.1.20 133809,133810 1sfxA 109 19.84 a.4.5.50 105505 1x9fB 145 20.21 a.1.1.2 114984 2gsqA 202 20.26 a.45.1.1,c.47.1.5 17715,33009 1y7yA 74 20.64 a.35.1.3 122729 2v1xA 591 20.90 1b0nA 111 21.08 a.34.1.1,a.35.1.3 17001,17064 2ftsA 419 22.87 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1a0pA 290 23.09 a.60.9.1,d.163.1.1 18105,42165 2nszA 129 23.89 a.118.1.14 138560 1y9qA 192 24.01 a.35.1.8,b.82.1.15 116592,116593 2de3A 365 24.79 1lrvA 244 26.26 a.118.1.5 19146 1a0p 290 26.48 2zfoC 147 26.91 1jkoC 52 27.51 a.4.1.2 66809 2ictA 94 27.71 2izzA 322 28.25 1rzsA 61 29.22 a.35.1.2 105139 2bnmA 198 29.23 a.35.1.3,b.82.1.10 128835,128836 2rcyA 262 29.55 1z91A 147 30.00 a.4.5.28 124736 1xo0A 324 30.11 a.60.9.1,d.163.1.1 115674,115675 1fx7A 230 31.32 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1nhyA 219 34.66 a.45.1.1,c.47.1.5 80520,80521 1oywA 523 35.28 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1lrv 244 35.70 1on2A 142 35.94 a.4.5.24,a.76.1.1 87103,87104 3b7hA 78 35.98 2graA 277 36.53 2dtrA 226 36.94 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1yuzA 202 36.99 a.25.1.1,g.41.5.1 124077,124078 1utxA 66 37.04 a.35.1.3 108034 2rfpA 171 38.50 1oe8A 211 40.65 a.45.1.1,c.47.1.5 86905,86906 1zy9A 564 41.38 b.30.5.11,c.1.8.13 125813,125814 2dh2A 424 41.91 2ebyA 113 42.10 1u8bA 133 43.39 2imsA 171 44.33 1px5A 349 44.33 a.160.1.2,d.218.1.6 95277,95278 2o3fA 111 44.71 2ondA 308 45.48 2ii2A 310 46.23 1kz7A 353 46.32 a.87.1.1,b.55.1.1 73333,73334 2o8xA 70 46.99 1a5tA 334 47.04 a.80.1.1,c.37.1.20 18450,32423 1mkmA 249 47.50 a.4.5.33,d.110.2.2 79242,79243 2b5aA 77 49.20 a.35.1.3 127882 1xqrA 296 49.91 a.118.1.21 122241 1h97A 147 51.32 a.1.1.2 60812 2cx5A 158 53.43 1p2xA 159 53.58 a.40.1.1 104062 1x9dA 538 55.63 a.102.2.1 121810 1yqgA 263 56.25 1ukz 203 56.83 1g7oA 215 57.35 a.45.1.1,c.47.1.5 60332,60333 1tqhA 247 58.88 c.69.1.29 107225 2pbyA 308 60.73 1adrA 76 61.77 a.35.1.2 17042 1knwA 425 62.14 b.49.2.3,c.1.6.1 90969,90970 1kgnA 329 62.57 a.25.1.2 68584 2pvuA 272 64.12 1f1eA 154 64.38 a.22.1.2 64927 1vflA 356 64.63 c.1.9.1 120041 2z0xA 158 65.69 2zfoB 142 65.98 3cucA 291 67.38 2o09A 189 67.82 1tadA 324 68.62 a.66.1.1,c.37.1.8 18194,32077 1js3A 486 69.06 c.67.1.6 67215 2j07A 420 69.56 a.99.1.1,c.28.1.1 137891,137892 1a0cA 438 70.24 c.1.15.3 29529 2gdrA 202 70.42 2bv6A 142 70.65 3bs3A 76 71.95 2zfoA 140 72.53 2ofyA 86 73.25 1bw0A 416 74.89 c.67.1.1 34385 1xqsA 280 74.96 a.118.1.21 122243 2g7uA 257 77.45 1lbkA 208 78.29 a.45.1.1,c.47.1.5 73809,73810 2ifuA 307 78.83 1ouvA 273 78.92 a.118.18.1 93570 1z9hA 290 79.00 a.45.1.1,c.47.1.5 124758,124759 2h09A 155 79.48 1v2aA 210 79.81 a.45.1.1,c.47.1.5 100263,100264 1pq1A 196 79.82 f.1.4.1 94986 1k1xA 659 80.31 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 2ia2A 265 81.18 1r69 69 82.13 1sedA 117 82.55 a.219.1.1 105449 2cro 71 82.66 1wdvA 152 83.45 d.116.1.1 114539 1m48A 133 83.71 a.26.1.2 74443 1e6cA 173 83.98 c.37.1.2 59296 1gqnA 252 84.24 c.1.10.1 90514 2vg3A 284 85.67 1r69A 69 85.69 a.35.1.2 17028 1x9fA 151 86.12 a.1.1.2 114983 1xpcA 248 87.49 a.123.1.1 115738 1xg2B 153 89.47 2a2rA 210 89.49 a.45.1.1,c.47.1.5 126058,126059 2c2aA 258 89.94 a.30.2.1,d.122.1.3 129662,129663