# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2uxuA 210 8.69e-24 2pbxA 203 9.92e-24 1vi0A 206 1.06e-23 a.4.1.9,a.121.1.1 100720,100721 1t56A 216 1.99e-23 a.4.1.9,a.121.1.1 106428,106429 2ibdA 204 3.42e-23 1rktA 205 3.82e-23 a.4.1.9,a.121.1.1 97623,97624 2hyjA 200 4.66e-23 2g7sA 194 4.66e-23 a.4.1.9,a.121.1.1 134737,134738 3ccyA 203 6.42e-23 1qvtA 194 8.26e-23 a.4.1.9,a.121.1.1 104602,104603 1jt6A 188 9.53e-23 a.4.1.9,a.121.1.1 67247,67248 2qtqA 213 1.03e-22 3bhqA 211 1.34e-22 3cdlA 203 1.87e-22 3bcgA 215 2.03e-22 2f07A 197 2.12e-22 3c2bA 221 2.30e-22 3crjA 199 2.64e-22 1zkgA 212 2.65e-22 a.4.1.9,a.121.1.1 125194,125195 1pb6A 212 2.71e-22 a.4.1.9,a.121.1.1 88017,88018 1z77A 200 2.72e-22 a.4.1.9,a.121.1.1 124588,124589 2fq4A 192 3.42e-22 a.4.1.9,a.121.1.1 133937,133938 3bruA 222 3.49e-22 2rasA 212 3.67e-22 2genA 197 3.89e-22 a.4.1.9,a.121.1.1 135062,135063 1ui5A 215 4.03e-22 a.4.1.9,a.121.1.1 107856,107857 2id6A 202 4.10e-22 2iekA 200 5.65e-22 3cwrA 208 7.15e-22 2nx4A 194 8.44e-22 3cjdA 198 9.35e-22 2qcoA 210 1.02e-21 2raeA 207 1.26e-21 2zb9A 214 1.40e-21 2hytA 197 2.17e-21 2gfnA 209 3.24e-21 a.4.1.9,a.121.1.1 135101,135102 2o7tA 199 3.60e-21 2dg7A 195 3.81e-21 2qkoA 215 4.43e-21 2iaiA 230 4.51e-21 2zcmA 192 5.09e-21 2jj7A 186 8.32e-21 2qibA 231 8.40e-21 1sgmA 191 1.52e-20 a.4.1.9,a.121.1.1 105537,105538 2id3A 225 1.57e-20 a.4.1.9,a.121.1.1 137261,137262 2tct 207 1.73e-20 2i10A 202 1.78e-20 a.4.1.9,a.121.1.1 136960,136961 1zk8A 183 1.80e-20 a.4.1.9,a.121.1.1 125177,125178 3b81A 203 2.56e-20 2g3bA 208 4.09e-20 a.4.1.9,a.121.1.1 134558,134559 2d6yA 202 4.63e-20 a.4.1.9,a.121.1.1 131313,131314 2optA 234 5.20e-20 2fbqA 235 5.84e-20 a.4.1.9,a.121.1.1 133256,133257 2np5A 203 6.61e-20 a.4.1.9,a.121.1.1 138424,138425 3bjbA 207 7.63e-20 2o7oA 207 7.91e-20 a.4.1.9,a.121.1.1 138930,138931 3bqyA 209 1.00e-19 2fx0A 201 1.06e-19 a.4.1.9,a.121.1.1 134269,134270 3colA 196 1.21e-19 2rekA 199 1.25e-19 3bniA 229 1.40e-19 2of7A 260 1.74e-19 2hkuA 215 2.04e-19 2oerA 214 2.51e-19 2q24A 194 3.09e-19 2fd5A 180 3.77e-19 a.4.1.9,a.121.1.1 133291,133292 2iu5A 195 4.46e-19 2g7gA 213 4.88e-19 a.4.1.9,a.121.1.1 134732,134733 2oi8A 216 5.66e-19 1a6i 217 9.35e-19 2guhA 214 1.35e-18 2dg8A 193 1.57e-18 2vprA 207 1.65e-18 2qwtA 196 2.18e-18 1z0xA 220 2.58e-18 a.4.1.9,a.121.1.1 124334,124335 2yveA 185 3.05e-18 2eh3A 179 3.38e-18 2hxoA 237 7.77e-18 1v7bA 185 1.08e-17 a.4.1.9,a.121.1.1 119861,119862 1t33A 224 4.82e-17 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 8.03e-16 a.4.1.9,a.121.1.1 134734,134735 2jn6A 97 0.3844 2ev0A 142 0.9700 a.4.5.24,a.76.1.1 132413,132414 2rn7A 108 1.003 2qq9A 226 1.274 2dt5A 211 1.383 a.4.5.38,c.2.1.12 131708,131709 1hlvA 131 1.388 a.4.1.7,a.4.1.7 65854,65855 1bl0A 129 2.883 a.4.1.8,a.4.1.8 16053,16054 2gsqA 202 3.745 a.45.1.1,c.47.1.5 17715,33009 1xsvA 113 5.615 a.4.13.3 116003 1nhyA 219 6.094 a.45.1.1,c.47.1.5 80520,80521 1wsuA 124 6.671 a.4.5.35,a.4.5.35 121245,121246 2pg4A 95 6.928 1xcbA 211 7.481 a.4.5.38,c.2.1.12 109552,109553 2v9vA 135 7.719 1tu7A 208 11.42 a.45.1.1,c.47.1.5 112653,112654 1z5hA 780 11.85 1x9fB 145 12.92 a.1.1.2 114984 2zfoC 147 13.16 1wa5B 530 13.37 a.118.1.1 114432 2ahrA 259 16.22 a.100.1.10,c.2.1.6 126775,126776 3co4A 312 16.95 1l3lA 234 18.43 a.4.6.2,d.110.5.1 73541,73542 1sfxA 109 20.19 a.4.5.50 105505 2graA 277 20.49 1on2A 142 20.64 a.4.5.24,a.76.1.1 87103,87104 3cucA 291 21.05 1resA 43 21.17 a.4.1.2 16023 1ijbA 202 21.41 c.62.1.1 71229 2fnaA 357 22.13 a.4.5.11,c.37.1.20 133809,133810 1xo0A 324 22.18 a.60.9.1,d.163.1.1 115674,115675 1oywA 523 22.56 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1xqsA 280 23.27 a.118.1.21 122243 1zljA 78 23.34 1je8A 82 25.57 a.4.6.2 77108 1zcaA 359 25.77 a.66.1.1,c.37.1.8 124897,124898 1px5A 349 25.87 a.160.1.2,d.218.1.6 95277,95278 1oe8A 211 26.00 a.45.1.1,c.47.1.5 86905,86906 2vg3A 284 27.44 1m48A 133 29.50 a.26.1.2 74443 1fseA 74 30.00 a.4.6.2 60000 2j07A 420 30.03 a.99.1.1,c.28.1.1 137891,137892 1y7yA 74 30.10 a.35.1.3 122729 2de3A 365 31.95 1jkoC 52 33.98 a.4.1.2 66809 1p2xA 159 34.07 a.40.1.1 104062 1h97A 147 34.15 a.1.1.2 60812 2bnmA 198 34.70 a.35.1.3,b.82.1.10 128835,128836 1ouvA 273 37.89 a.118.18.1 93570 1y9qA 192 38.34 a.35.1.8,b.82.1.15 116592,116593 1b0nA 111 38.82 a.34.1.1,a.35.1.3 17001,17064 1yuzA 202 40.02 a.25.1.1,g.41.5.1 124077,124078 1kz7A 353 40.41 a.87.1.1,b.55.1.1 73333,73334 1xqrA 296 40.75 a.118.1.21 122241 2rfpA 171 42.43 2v1xA 591 42.96 1yhuB 144 44.85 2ftsA 419 46.12 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1lrvA 244 46.52 a.118.1.5 19146 1rzsA 61 46.71 a.35.1.2 105139 2nszA 129 48.55 a.118.1.14 138560 1a0pA 290 48.63 a.60.9.1,d.163.1.1 18105,42165 2izzA 322 50.56 1fx7A 230 50.59 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1z9hA 290 51.78 a.45.1.1,c.47.1.5 124758,124759 2d2mC 147 52.40 1sedA 117 53.23 a.219.1.1 105449 1bw0A 416 53.26 c.67.1.1 34385 2gdrA 202 53.77 2ii2A 310 54.28 3bqpA 80 55.42 1lrv 244 55.91 1lucA 355 55.92 c.1.16.1 29547 2rcyA 262 56.94 2ondA 308 56.99 1f1eA 154 58.10 a.22.1.2 64927 3cloA 258 58.37 1zy9A 564 58.45 b.30.5.11,c.1.8.13 125813,125814 2o09A 189 59.13 1dlyA 164 61.44 a.1.1.1 14983 2zfoA 140 61.85 1ji6A 589 63.18 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1tqhA 247 63.29 c.69.1.29 107225 2nt0A 497 66.44 b.71.1.2,c.1.8.3 138561,138562 1lbkA 208 66.94 a.45.1.1,c.47.1.5 73809,73810 1knwA 425 68.12 b.49.2.3,c.1.6.1 90969,90970 1u8bA 133 68.94 2ifuA 307 69.39 1m12A 84 70.11 a.64.1.1 84745 1pgtA 210 71.70 a.45.1.1,c.47.1.5 17515,32809 2ictA 94 71.76 2dtrA 226 71.92 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1dd9A 338 71.98 e.13.1.1 43254 2nrlA 147 72.22 2h09A 155 73.28 2pvqA 201 73.61 2q4uA 272 74.08 1nxcA 478 74.89 a.102.2.1 92293 2c2aA 258 75.48 a.30.2.1,d.122.1.3 129662,129663 1v2aA 210 76.11 a.45.1.1,c.47.1.5 100263,100264 1kgnA 329 76.46 a.25.1.2 68584 3b7hA 78 76.47 2dh2A 424 77.79 1a0fA 201 78.17 a.45.1.1,c.47.1.5 17737,33031 2a2rA 210 79.00 a.45.1.1,c.47.1.5 126058,126059 1n2aA 201 79.09 a.45.1.1,c.47.1.5 91553,91554 1s69A 124 79.89 a.1.1.1 105305 1mkmA 249 79.93 a.4.5.33,d.110.2.2 79242,79243 1a0p 290 80.21 1xg2B 153 80.23 2ebyA 113 81.40 2d4zA 250 81.81 d.37.1.1,d.37.1.1 131260,131261 1xpcA 248 83.61 a.123.1.1 115738 1utxA 66 83.95 a.35.1.3 108034 1iyhA 198 84.71 a.45.1.1,c.47.1.5 83790,83791 2f4mB 61 87.06 a.189.1.1 132931 1ny1A 240 87.19 c.6.2.3 86395 2cj4A 150 87.87 a.29.6.1 130518 2b5aA 77 88.17 a.35.1.3 127882 2cx5A 158 88.41