# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 5.66e-22 1vi0A 206 9.44e-22 a.4.1.9,a.121.1.1 100720,100721 2uxuA 210 1.17e-21 2ibdA 204 2.16e-21 1t56A 216 2.73e-21 a.4.1.9,a.121.1.1 106428,106429 2g7sA 194 3.36e-21 a.4.1.9,a.121.1.1 134737,134738 2hyjA 200 3.84e-21 2qtqA 213 4.26e-21 1jt6A 188 4.90e-21 a.4.1.9,a.121.1.1 67247,67248 1rktA 205 5.16e-21 a.4.1.9,a.121.1.1 97623,97624 3cdlA 203 5.73e-21 2f07A 197 6.88e-21 1qvtA 194 7.65e-21 a.4.1.9,a.121.1.1 104602,104603 3ccyA 203 8.31e-21 3bruA 222 8.59e-21 2genA 197 8.81e-21 a.4.1.9,a.121.1.1 135062,135063 3bhqA 211 9.09e-21 3bcgA 215 1.04e-20 2rasA 212 1.08e-20 3c2bA 221 1.22e-20 1pb6A 212 1.23e-20 a.4.1.9,a.121.1.1 88017,88018 2fq4A 192 1.70e-20 a.4.1.9,a.121.1.1 133937,133938 1ui5A 215 1.83e-20 a.4.1.9,a.121.1.1 107856,107857 1z77A 200 2.15e-20 a.4.1.9,a.121.1.1 124588,124589 1zkgA 212 2.65e-20 a.4.1.9,a.121.1.1 125194,125195 3crjA 199 2.74e-20 2zb9A 214 2.75e-20 2gfnA 209 2.95e-20 a.4.1.9,a.121.1.1 135101,135102 2nx4A 194 3.79e-20 3cwrA 208 4.08e-20 2raeA 207 4.38e-20 2id6A 202 4.87e-20 2iekA 200 6.31e-20 2qcoA 210 8.34e-20 3cjdA 198 1.05e-19 2iaiA 230 1.51e-19 2id3A 225 1.52e-19 a.4.1.9,a.121.1.1 137261,137262 2hytA 197 1.62e-19 2i10A 202 1.96e-19 a.4.1.9,a.121.1.1 136960,136961 2dg7A 195 2.22e-19 2zcmA 192 2.41e-19 2jj7A 186 2.44e-19 2o7tA 199 3.43e-19 2qkoA 215 5.28e-19 2qibA 231 5.34e-19 2d6yA 202 8.21e-19 a.4.1.9,a.121.1.1 131313,131314 1sgmA 191 1.01e-18 a.4.1.9,a.121.1.1 105537,105538 2tct 207 1.05e-18 3b81A 203 1.16e-18 2g3bA 208 1.22e-18 a.4.1.9,a.121.1.1 134558,134559 1zk8A 183 1.98e-18 a.4.1.9,a.121.1.1 125177,125178 2fx0A 201 3.19e-18 a.4.1.9,a.121.1.1 134269,134270 2o7oA 207 3.30e-18 a.4.1.9,a.121.1.1 138930,138931 2fbqA 235 3.93e-18 a.4.1.9,a.121.1.1 133256,133257 3bqyA 209 3.96e-18 2np5A 203 4.29e-18 a.4.1.9,a.121.1.1 138424,138425 2rekA 199 5.60e-18 3colA 196 5.61e-18 3bjbA 207 6.07e-18 2hkuA 215 6.59e-18 2optA 234 7.87e-18 2q24A 194 8.64e-18 3bniA 229 1.05e-17 2of7A 260 1.23e-17 2g7gA 213 1.57e-17 a.4.1.9,a.121.1.1 134732,134733 2fd5A 180 1.60e-17 a.4.1.9,a.121.1.1 133291,133292 2iu5A 195 1.74e-17 2oerA 214 2.24e-17 2vprA 207 2.28e-17 1a6i 217 3.18e-17 2qwtA 196 3.75e-17 2dg8A 193 5.16e-17 1z0xA 220 5.58e-17 a.4.1.9,a.121.1.1 124334,124335 2oi8A 216 6.74e-17 2guhA 214 9.44e-17 1v7bA 185 2.46e-16 a.4.1.9,a.121.1.1 119861,119862 2yveA 185 2.85e-16 2eh3A 179 2.97e-16 2hxoA 237 3.61e-16 1t33A 224 9.78e-16 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 1.97e-14 a.4.1.9,a.121.1.1 134734,134735 2jn6A 97 0.3075 2dt5A 211 0.4569 a.4.5.38,c.2.1.12 131708,131709 1hlvA 131 0.7142 a.4.1.7,a.4.1.7 65854,65855 2ev0A 142 0.8959 a.4.5.24,a.76.1.1 132413,132414 2rn7A 108 1.349 1wsuA 124 1.545 a.4.5.35,a.4.5.35 121245,121246 1xcbA 211 1.585 a.4.5.38,c.2.1.12 109552,109553 2qq9A 226 1.833 2pg4A 95 1.981 1on2A 142 3.520 a.4.5.24,a.76.1.1 87103,87104 1xsvA 113 5.138 a.4.13.3 116003 2h09A 155 5.460 1ijbA 202 5.754 c.62.1.1 71229 1sfxA 109 5.792 a.4.5.50 105505 2ahrA 259 6.012 a.100.1.10,c.2.1.6 126775,126776 2bnmA 198 6.459 a.35.1.3,b.82.1.10 128835,128836 1zljA 78 6.580 1jkoC 52 6.898 a.4.1.2 66809 2v9vA 135 7.328 1je8A 82 8.042 a.4.6.2 77108 1y9qA 192 8.407 a.35.1.8,b.82.1.15 116592,116593 1fseA 74 8.561 a.4.6.2 60000 1l3lA 234 8.676 a.4.6.2,d.110.5.1 73541,73542 1y7yA 74 9.224 a.35.1.3 122729 2o3fA 111 9.453 1b0nA 111 9.561 a.34.1.1,a.35.1.3 17001,17064 1bl0A 129 9.769 a.4.1.8,a.4.1.8 16053,16054 1x9fB 145 10.81 a.1.1.2 114984 2graA 277 13.85 3b7hA 78 14.03 1u8bA 133 14.66 1utxA 66 15.69 a.35.1.3 108034 2gsqA 202 16.65 a.45.1.1,c.47.1.5 17715,33009 2fnaA 357 17.94 a.4.5.11,c.37.1.20 133809,133810 1adrA 76 18.04 a.35.1.2 17042 2dtrA 226 18.05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2nszA 129 18.86 a.118.1.14 138560 1lmb3 92 19.21 2qwwA 154 19.22 2ebyA 113 19.53 2r1jL 68 19.61 2cro 71 20.02 2ictA 94 20.96 1rzsA 61 21.19 a.35.1.2 105139 1zcaA 359 21.22 a.66.1.1,c.37.1.8 124897,124898 1resA 43 22.17 a.4.1.2 16023 2b5aA 77 22.46 a.35.1.3 127882 1oe8A 211 22.67 a.45.1.1,c.47.1.5 86905,86906 2izzA 322 23.83 1fx7A 230 24.23 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 3cloA 258 24.50 1r69 69 25.39 1r69A 69 25.90 a.35.1.2 17028 2nrlA 147 27.63 1yqgA 263 27.83 2ifuA 307 28.83 1ji6A 589 29.19 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 2nnnA 140 29.44 2croA 71 30.33 a.35.1.2 17038 1s3jA 155 30.68 a.4.5.28 98437 1a0pA 290 31.19 a.60.9.1,d.163.1.1 18105,42165 2ondA 308 31.57 3bddA 142 31.92 2rcyA 262 32.23 1sxjC 340 33.27 a.80.1.1,c.37.1.20 106085,106086 3bj6A 152 33.64 1ic8A 194 33.70 a.4.1.1,a.35.1.1 76740,76741 2nyxA 168 35.27 2rdpA 150 35.40 2q0zX 339 35.75 1z91A 147 35.90 a.4.5.28 124736 2fjrA 189 35.99 1bw0A 416 36.28 c.67.1.1 34385 3bs3A 76 36.30 1mkmA 249 36.60 a.4.5.33,d.110.2.2 79242,79243 1neqA 74 36.67 a.35.1.2 17063 1ypxA 375 36.69 1jgsA 138 37.21 a.4.5.28 66683 2zfoC 147 37.61 2ftsA 419 37.85 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1wa5B 530 38.36 a.118.1.1 114432 1xdyA 298 39.25 d.176.1.1 115186 2bkwA 385 39.28 c.67.1.3 128714 2ethA 154 40.19 a.4.5.28 132358 2ofyA 86 42.54 2cfxA 144 42.62 a.4.5.32,d.58.4.2 130395,130396 1nhyA 219 42.87 a.45.1.1,c.47.1.5 80520,80521 3bwgA 239 42.99 2ia2A 265 43.19 2auwA 170 44.27 a.35.1.10,d.331.1.1 127339,127340 2q4uA 272 44.56 2dh2A 424 44.86 1aisB 200 46.08 a.74.1.2,a.74.1.2 18384,18385 3ciwA 348 46.29 3cecA 104 46.29 2g7uA 257 47.13 2gxgA 146 47.75 1vz0A 230 48.90 a.4.14.1,d.268.1.1 108929,108930 1sedA 117 49.39 a.219.1.1 105449 3co4A 312 49.49 2o8xA 70 49.72 1xo0A 324 50.19 a.60.9.1,d.163.1.1 115674,115675 2f4mB 61 50.64 a.189.1.1 132931 2o0yA 260 50.74 3bpvA 138 50.86 1jftA 340 54.71 a.35.1.5,c.93.1.1 66652,66653 2j07A 420 54.85 a.99.1.1,c.28.1.1 137891,137892 2cx5A 158 56.48 1omrA 201 57.08 a.39.1.5 93349 1a0p 290 57.34 1lvaA 258 59.35 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2zfoA 140 59.93 2zfdA 226 60.25 1y1xA 191 60.40 a.39.1.8 116374 1wdcB 156 64.05 a.39.1.5 17302 2c61A 469 65.40 2ppxA 99 65.49 1no5A 114 70.84 d.218.1.5 92014 1wdvA 152 71.06 d.116.1.1 114539 2o09A 189 72.31 2hq2A 354 72.40 e.62.1.1 136656 3c57A 95 72.98 2ivmA 150 73.85 2pmbA 462 74.36 1lnwA 147 74.88 a.4.5.28 78104 2de3A 365 75.24 1v2aA 210 78.19 a.45.1.1,c.47.1.5 100263,100264 2qz8A 149 78.38 1r8eA 278 78.52 a.6.1.3,d.60.1.1 104843,104844 2dnxA 130 80.05 1h97A 147 80.54 a.1.1.2 60812 1xdpA 687 80.82 a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4 121896,121897,121898,121899 1ub9A 100 81.76 a.4.5.28 99159 2zfoB 142 82.59 2blfA 373 82.92 2d1hA 109 83.94 a.4.5.50 131125 1s69A 124 84.71 a.1.1.1 105305 1tw3A 360 85.06 a.4.5.29,c.66.1.12 107373,107374 1j5yA 187 86.20 a.4.5.1,d.94.2.1 71592,71593 1ukz 203 87.32 2d2mC 147 88.24 2pgd 482 88.39 2r8wA 332 88.98 2nugA 221 88.98