# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2uxuA 210 1.27e-23 1vi0A 206 1.33e-23 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 1.57e-23 1rktA 205 3.49e-23 a.4.1.9,a.121.1.1 97623,97624 2hyjA 200 4.31e-23 1jt6A 188 4.57e-23 a.4.1.9,a.121.1.1 67247,67248 1t56A 216 5.18e-23 a.4.1.9,a.121.1.1 106428,106429 1qvtA 194 5.87e-23 a.4.1.9,a.121.1.1 104602,104603 2ibdA 204 5.94e-23 3ccyA 203 6.21e-23 3bhqA 211 1.13e-22 2g7sA 194 1.33e-22 a.4.1.9,a.121.1.1 134737,134738 3c2bA 221 1.46e-22 2qtqA 213 1.68e-22 3cdlA 203 1.87e-22 1zkgA 212 2.36e-22 a.4.1.9,a.121.1.1 125194,125195 1z77A 200 2.50e-22 a.4.1.9,a.121.1.1 124588,124589 3crjA 199 3.20e-22 2f07A 197 3.43e-22 2fq4A 192 4.08e-22 a.4.1.9,a.121.1.1 133937,133938 3bruA 222 4.97e-22 2rasA 212 5.38e-22 2qcoA 210 6.12e-22 2id6A 202 6.23e-22 2iekA 200 7.57e-22 2raeA 207 7.98e-22 3cwrA 208 8.78e-22 1ui5A 215 8.88e-22 a.4.1.9,a.121.1.1 107856,107857 3bcgA 215 9.34e-22 1pb6A 212 1.12e-21 a.4.1.9,a.121.1.1 88017,88018 2zb9A 214 1.12e-21 2nx4A 194 1.40e-21 2genA 197 1.55e-21 a.4.1.9,a.121.1.1 135062,135063 2gfnA 209 2.66e-21 a.4.1.9,a.121.1.1 135101,135102 2o7tA 199 3.17e-21 2hytA 197 3.96e-21 2qkoA 215 6.25e-21 2id3A 225 6.74e-21 a.4.1.9,a.121.1.1 137261,137262 2dg7A 195 7.09e-21 2jj7A 186 1.16e-20 2qibA 231 1.18e-20 2zcmA 192 1.27e-20 2iaiA 230 1.34e-20 2g3bA 208 1.65e-20 a.4.1.9,a.121.1.1 134558,134559 2tct 207 1.72e-20 1sgmA 191 2.99e-20 a.4.1.9,a.121.1.1 105537,105538 2d6yA 202 3.07e-20 a.4.1.9,a.121.1.1 131313,131314 3cjdA 198 4.09e-20 1zk8A 183 4.97e-20 a.4.1.9,a.121.1.1 125177,125178 2np5A 203 5.08e-20 a.4.1.9,a.121.1.1 138424,138425 3b81A 203 5.14e-20 2optA 234 6.00e-20 2i10A 202 6.39e-20 a.4.1.9,a.121.1.1 136960,136961 3bniA 229 8.07e-20 2o7oA 207 9.22e-20 a.4.1.9,a.121.1.1 138930,138931 2rekA 199 1.11e-19 2of7A 260 1.54e-19 3colA 196 1.54e-19 2fx0A 201 1.58e-19 a.4.1.9,a.121.1.1 134269,134270 3bjbA 207 1.63e-19 2iu5A 195 1.98e-19 2hkuA 215 2.21e-19 3bqyA 209 2.57e-19 2fbqA 235 3.09e-19 a.4.1.9,a.121.1.1 133256,133257 2fd5A 180 3.43e-19 a.4.1.9,a.121.1.1 133291,133292 2q24A 194 5.71e-19 2g7gA 213 5.93e-19 a.4.1.9,a.121.1.1 134732,134733 2oerA 214 6.43e-19 2oi8A 216 8.75e-19 2dg8A 193 1.69e-18 1a6i 217 1.73e-18 2vprA 207 2.51e-18 2guhA 214 3.09e-18 1z0xA 220 3.54e-18 a.4.1.9,a.121.1.1 124334,124335 2yveA 185 3.58e-18 1v7bA 185 3.94e-18 a.4.1.9,a.121.1.1 119861,119862 1t33A 224 5.11e-18 a.4.1.9,a.121.1.1 106295,106296 2qwtA 196 5.25e-18 2eh3A 179 5.72e-18 2hxoA 237 8.19e-18 2g7lA 243 1.94e-15 a.4.1.9,a.121.1.1 134734,134735 1hlvA 131 0.7464 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 0.8665 2ev0A 142 1.308 a.4.5.24,a.76.1.1 132413,132414 2v9vA 135 1.884 2dt5A 211 2.121 a.4.5.38,c.2.1.12 131708,131709 2qq9A 226 2.335 1z5hA 780 4.998 1bl0A 129 5.599 a.4.1.8,a.4.1.8 16053,16054 2gsqA 202 6.584 a.45.1.1,c.47.1.5 17715,33009 2fnaA 357 7.149 a.4.5.11,c.37.1.20 133809,133810 2pg4A 95 7.224 2rn7A 108 7.937 1x9fB 145 8.430 a.1.1.2 114984 2ondA 308 9.476 3co4A 312 12.01 1xcbA 211 12.59 a.4.5.38,c.2.1.12 109552,109553 2ahrA 259 12.64 a.100.1.10,c.2.1.6 126775,126776 1s69A 124 13.05 a.1.1.1 105305 2v1xA 591 13.22 1nhyA 219 13.48 a.45.1.1,c.47.1.5 80520,80521 1xsvA 113 13.71 a.4.13.3 116003 2ho1A 252 14.33 2nszA 129 15.26 a.118.1.14 138560 1wsuA 124 15.97 a.4.5.35,a.4.5.35 121245,121246 2zfoC 147 16.32 1zcaA 359 17.99 a.66.1.1,c.37.1.8 124897,124898 1yhuB 144 20.10 1fseA 74 20.63 a.4.6.2 60000 2qguA 211 21.28 1zy9A 564 21.77 b.30.5.11,c.1.8.13 125813,125814 1oywA 523 21.80 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1pq1A 196 22.09 f.1.4.1 94986 1wa5B 530 22.26 a.118.1.1 114432 1a0pA 290 23.32 a.60.9.1,d.163.1.1 18105,42165 1ee4A 423 23.35 a.118.1.1 19128 1u8bA 133 23.81 1x9fA 151 24.03 a.1.1.2 114983 1xqsA 280 25.18 a.118.1.21 122243 1sfxA 109 25.19 a.4.5.50 105505 1tu7A 208 25.84 a.45.1.1,c.47.1.5 112653,112654 1on2A 142 26.27 a.4.5.24,a.76.1.1 87103,87104 1lmb3 92 27.21 1dlyA 164 28.01 a.1.1.1 14983 1l3lA 234 28.35 a.4.6.2,d.110.5.1 73541,73542 1jdhA 529 28.83 a.118.1.1 66549 1zljA 78 30.15 1ukz 203 30.84 1a5tA 334 30.86 a.80.1.1,c.37.1.20 18450,32423 1lbkA 208 31.62 a.45.1.1,c.47.1.5 73809,73810 1ji6A 589 33.27 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 2pvuA 272 33.36 2ftsA 419 33.38 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1xqrA 296 33.54 a.118.1.21 122241 1v2aA 210 34.26 a.45.1.1,c.47.1.5 100263,100264 1y7yA 74 35.76 a.35.1.3 122729 1xo0A 324 35.88 a.60.9.1,d.163.1.1 115674,115675 1kz7A 353 36.39 a.87.1.1,b.55.1.1 73333,73334 2ii2A 310 36.50 2ifuA 307 36.55 1yqgA 263 37.04 2q4uA 272 37.35 1kgnA 329 37.43 a.25.1.2 68584 2ictA 94 37.51 1je8A 82 37.96 a.4.6.2 77108 2ieeA 271 39.04 1b0nA 111 40.12 a.34.1.1,a.35.1.3 17001,17064 1resA 43 41.98 a.4.1.2 16023 1u61A 138 43.53 a.149.1.1 107696 2izzA 322 45.94 2a2rA 210 46.65 a.45.1.1,c.47.1.5 126058,126059 2bnmA 198 46.97 a.35.1.3,b.82.1.10 128835,128836 1oe8A 211 47.14 a.45.1.1,c.47.1.5 86905,86906 2c1mA 424 47.68 2vq2A 225 47.83 2dnxA 130 48.69 1mkmA 249 49.09 a.4.5.33,d.110.2.2 79242,79243 1utxA 66 52.21 a.35.1.3 108034 2graA 277 52.26 2cx5A 158 53.36 1y9qA 192 54.08 a.35.1.8,b.82.1.15 116592,116593 2btzA 394 54.18 1fx7A 230 55.80 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2o3fA 111 56.28 2bv6A 142 57.10 2zfoB 142 57.18 2dh2A 424 57.37 2plc 274 58.19 2erbA 125 59.40 1f1eA 154 59.62 a.22.1.2 64927 2o1mA 258 59.90 2a2mA 258 60.85 a.132.1.3 126039 2nrlA 147 61.71 1a0p 290 62.60 1xnfA 275 62.80 a.118.8.1 115580 2o8xA 70 64.08 1ouvA 273 64.56 a.118.18.1 93570 2f4mB 61 65.54 a.189.1.1 132931 2pl2A 217 67.09 1px5A 349 67.63 a.160.1.2,d.218.1.6 95277,95278 1rzsA 61 67.71 a.35.1.2 105139 2de3A 365 67.85 2z0xA 158 69.14 2q0zX 339 71.77 1lrvA 244 71.92 a.118.1.5 19146 2ihdA 155 74.93 1z91A 147 75.51 a.4.5.28 124736 1wd6A 123 75.60 d.58.4.12 114525 1wdcB 156 75.67 a.39.1.5 17302 1ho8A 480 76.11 a.118.1.9 61107 1wdvA 152 76.15 d.116.1.1 114539 2bk9A 153 77.80 2dtrA 226 78.46 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2e60A 101 78.84 1z9hA 290 79.38 a.45.1.1,c.47.1.5 124758,124759 2zfoA 140 79.72 2pbyA 308 80.42 1vh0A 161 80.77 c.116.1.3 100626 2qr4A 587 81.27 1ijbA 202 81.44 c.62.1.1 71229 2qwwA 154 82.11 2imsA 171 83.64 1unlD 208 84.81 a.74.1.1 113326 2v25A 259 85.33 1lucA 355 85.95 c.1.16.1 29547 1p2xA 159 86.94 a.40.1.1 104062 2b5aA 77 88.89 a.35.1.3 127882