# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2uxuA 210 1.19e-23 2pbxA 203 1.46e-23 1vi0A 206 1.66e-23 a.4.1.9,a.121.1.1 100720,100721 1rktA 205 3.75e-23 a.4.1.9,a.121.1.1 97623,97624 1t56A 216 3.91e-23 a.4.1.9,a.121.1.1 106428,106429 2hyjA 200 4.10e-23 3ccyA 203 5.65e-23 1jt6A 188 6.81e-23 a.4.1.9,a.121.1.1 67247,67248 2ibdA 204 6.84e-23 1qvtA 194 7.73e-23 a.4.1.9,a.121.1.1 104602,104603 3bhqA 211 9.95e-23 3c2bA 221 1.28e-22 2g7sA 194 1.29e-22 a.4.1.9,a.121.1.1 134737,134738 2qtqA 213 1.51e-22 2f07A 197 2.28e-22 1zkgA 212 2.38e-22 a.4.1.9,a.121.1.1 125194,125195 3cdlA 203 2.45e-22 1z77A 200 2.54e-22 a.4.1.9,a.121.1.1 124588,124589 2fq4A 192 3.18e-22 a.4.1.9,a.121.1.1 133937,133938 3crjA 199 3.35e-22 3bruA 222 4.31e-22 3bcgA 215 5.44e-22 2id6A 202 6.00e-22 2rasA 212 6.10e-22 3cwrA 208 6.95e-22 1pb6A 212 6.96e-22 a.4.1.9,a.121.1.1 88017,88018 1ui5A 215 7.05e-22 a.4.1.9,a.121.1.1 107856,107857 2qcoA 210 7.26e-22 2iekA 200 7.33e-22 2raeA 207 7.92e-22 2genA 197 1.02e-21 a.4.1.9,a.121.1.1 135062,135063 2zb9A 214 1.26e-21 2nx4A 194 1.74e-21 2gfnA 209 2.59e-21 a.4.1.9,a.121.1.1 135101,135102 2o7tA 199 3.44e-21 2hytA 197 3.95e-21 2qkoA 215 4.59e-21 2dg7A 195 6.01e-21 2id3A 225 6.72e-21 a.4.1.9,a.121.1.1 137261,137262 2qibA 231 9.61e-21 2jj7A 186 1.18e-20 2zcmA 192 1.21e-20 2iaiA 230 1.29e-20 2g3bA 208 1.35e-20 a.4.1.9,a.121.1.1 134558,134559 2tct 207 1.48e-20 1sgmA 191 2.48e-20 a.4.1.9,a.121.1.1 105537,105538 2d6yA 202 2.88e-20 a.4.1.9,a.121.1.1 131313,131314 2optA 234 4.00e-20 3cjdA 198 4.16e-20 1zk8A 183 4.56e-20 a.4.1.9,a.121.1.1 125177,125178 2np5A 203 4.69e-20 a.4.1.9,a.121.1.1 138424,138425 2i10A 202 5.75e-20 a.4.1.9,a.121.1.1 136960,136961 3b81A 203 6.82e-20 2o7oA 207 7.26e-20 a.4.1.9,a.121.1.1 138930,138931 3bniA 229 8.32e-20 2iu5A 195 1.22e-19 3colA 196 1.40e-19 2of7A 260 1.51e-19 2fx0A 201 1.63e-19 a.4.1.9,a.121.1.1 134269,134270 2rekA 199 1.70e-19 3bjbA 207 1.75e-19 3bqyA 209 1.91e-19 2hkuA 215 2.17e-19 2fbqA 235 2.85e-19 a.4.1.9,a.121.1.1 133256,133257 2fd5A 180 2.87e-19 a.4.1.9,a.121.1.1 133291,133292 2g7gA 213 5.84e-19 a.4.1.9,a.121.1.1 134732,134733 2oerA 214 6.31e-19 2q24A 194 6.52e-19 2oi8A 216 1.07e-18 1a6i 217 1.11e-18 2dg8A 193 1.40e-18 2vprA 207 1.41e-18 1z0xA 220 2.67e-18 a.4.1.9,a.121.1.1 124334,124335 2yveA 185 3.21e-18 2guhA 214 3.36e-18 1v7bA 185 4.01e-18 a.4.1.9,a.121.1.1 119861,119862 2qwtA 196 5.59e-18 2eh3A 179 5.97e-18 2hxoA 237 6.11e-18 1t33A 224 9.53e-18 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 1.87e-15 a.4.1.9,a.121.1.1 134734,134735 2jn6A 97 0.6402 2ev0A 142 0.7657 a.4.5.24,a.76.1.1 132413,132414 1hlvA 131 0.8527 a.4.1.7,a.4.1.7 65854,65855 2dt5A 211 1.722 a.4.5.38,c.2.1.12 131708,131709 2qq9A 226 1.975 2v9vA 135 2.329 2rn7A 108 5.203 1bl0A 129 5.553 a.4.1.8,a.4.1.8 16053,16054 1z5hA 780 5.945 2pg4A 95 6.683 2fnaA 357 7.189 a.4.5.11,c.37.1.20 133809,133810 2ondA 308 8.036 1xsvA 113 8.982 a.4.13.3 116003 2gsqA 202 9.054 a.45.1.1,c.47.1.5 17715,33009 1nhyA 219 10.58 a.45.1.1,c.47.1.5 80520,80521 2ahrA 259 10.72 a.100.1.10,c.2.1.6 126775,126776 1xcbA 211 11.33 a.4.5.38,c.2.1.12 109552,109553 1zy9A 564 11.71 b.30.5.11,c.1.8.13 125813,125814 1wsuA 124 12.13 a.4.5.35,a.4.5.35 121245,121246 2ho1A 252 14.93 2v1xA 591 15.40 1x9fB 145 15.64 a.1.1.2 114984 1s69A 124 15.72 a.1.1.1 105305 3co4A 312 16.64 1fseA 74 16.81 a.4.6.2 60000 1zcaA 359 17.46 a.66.1.1,c.37.1.8 124897,124898 2nszA 129 18.06 a.118.1.14 138560 2qguA 211 18.61 1on2A 142 18.72 a.4.5.24,a.76.1.1 87103,87104 1pq1A 196 19.74 f.1.4.1 94986 1sfxA 109 19.74 a.4.5.50 105505 2ftsA 419 21.01 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1u8bA 133 21.74 1l3lA 234 21.96 a.4.6.2,d.110.5.1 73541,73542 1yhuB 144 22.14 1zljA 78 24.80 1ee4A 423 25.00 a.118.1.1 19128 1lmb3 92 25.30 1a0pA 290 25.97 a.60.9.1,d.163.1.1 18105,42165 1tu7A 208 26.31 a.45.1.1,c.47.1.5 112653,112654 1wa5B 530 26.37 a.118.1.1 114432 1oywA 523 26.42 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1dlyA 164 27.43 a.1.1.1 14983 2ictA 94 27.56 2zfoC 147 27.81 1je8A 82 28.28 a.4.6.2 77108 2pvuA 272 28.34 1xo0A 324 28.93 a.60.9.1,d.163.1.1 115674,115675 1b0nA 111 29.28 a.34.1.1,a.35.1.3 17001,17064 1a5tA 334 29.34 a.80.1.1,c.37.1.20 18450,32423 1ukz 203 29.78 2ieeA 271 30.03 1yqgA 263 31.19 2dnxA 130 32.26 1jdhA 529 32.44 a.118.1.1 66549 1kz7A 353 33.22 a.87.1.1,b.55.1.1 73333,73334 1xqsA 280 33.90 a.118.1.21 122243 1v2aA 210 34.61 a.45.1.1,c.47.1.5 100263,100264 2ii2A 310 35.35 2o8xA 70 36.38 1resA 43 37.22 a.4.1.2 16023 1xqrA 296 38.36 a.118.1.21 122241 1y7yA 74 38.88 a.35.1.3 122729 1lbkA 208 40.78 a.45.1.1,c.47.1.5 73809,73810 1kgnA 329 41.33 a.25.1.2 68584 2izzA 322 44.41 2c1mA 424 44.73 1f1eA 154 44.93 a.22.1.2 64927 2dh2A 424 44.99 1utxA 66 45.00 a.35.1.3 108034 2erbA 125 46.14 1lrvA 244 46.70 a.118.1.5 19146 2qwwA 154 46.91 1ji6A 589 47.97 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 2nrlA 147 48.23 1rzsA 61 49.18 a.35.1.2 105139 2plc 274 49.38 1mkmA 249 49.88 a.4.5.33,d.110.2.2 79242,79243 2cx5A 158 49.89 2btzA 394 50.33 2o3fA 111 50.36 1x9fA 151 50.71 a.1.1.2 114983 2bnmA 198 51.00 a.35.1.3,b.82.1.10 128835,128836 2o1mA 258 51.71 1xnfA 275 51.72 a.118.8.1 115580 1fx7A 230 52.58 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2a2rA 210 54.35 a.45.1.1,c.47.1.5 126058,126059 1z91A 147 55.13 a.4.5.28 124736 1oe8A 211 55.40 a.45.1.1,c.47.1.5 86905,86906 1ny1A 240 56.09 c.6.2.3 86395 2zfoB 142 56.22 1e6cA 173 58.44 c.37.1.2 59296 2z0xA 158 59.34 2graA 277 60.87 2q4uA 272 61.74 2dtrA 226 61.86 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2ihdA 155 62.16 1y9qA 192 63.74 a.35.1.8,b.82.1.15 116592,116593 1u61A 138 64.41 a.149.1.1 107696 2e60A 101 64.76 2f4mB 61 66.60 a.189.1.1 132931 2pl2A 217 69.04 1ouvA 273 69.07 a.118.18.1 93570 2ifuA 307 70.54 1l5jA 865 71.33 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 1b6g 310 72.81 1wdvA 152 72.85 d.116.1.1 114539 1a0p 290 73.16 1vh0A 161 73.66 c.116.1.3 100626 2vq2A 225 74.21 1z9hA 290 74.81 a.45.1.1,c.47.1.5 124758,124759 2b5aA 77 75.62 a.35.1.3 127882 1vz0A 230 76.77 a.4.14.1,d.268.1.1 108929,108930 2o09A 189 76.95 2bkmA 128 77.75 2v25A 259 78.18 2bv6A 142 78.88 2pexA 153 79.07 1unlD 208 80.36 a.74.1.1 113326 1qsaA 618 81.00 a.118.5.1,d.2.1.6 19182,36988 2vl6A 268 81.07 3ciwA 348 81.36 2a2mA 258 81.42 a.132.1.3 126039 1l7vA 326 82.36 f.22.1.1 73672 1ijbA 202 82.38 c.62.1.1 71229 1yuzA 202 82.71 a.25.1.1,g.41.5.1 124077,124078 2de3A 365 83.52 1jlvA 209 83.57 a.45.1.1,c.47.1.5 71729,71730 2bk9A 153 83.64 2q0zX 339 84.67 3cucA 291 85.02 1px5A 349 85.21 a.160.1.2,d.218.1.6 95277,95278 2zfdA 226 86.55 1p2xA 159 86.75 a.40.1.1 104062 2nvoA 535 89.79