# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2uxuA 210 7.53e-24 2pbxA 203 9.29e-24 1vi0A 206 9.89e-24 a.4.1.9,a.121.1.1 100720,100721 1rktA 205 2.45e-23 a.4.1.9,a.121.1.1 97623,97624 2hyjA 200 2.93e-23 1jt6A 188 3.16e-23 a.4.1.9,a.121.1.1 67247,67248 3ccyA 203 3.26e-23 1t56A 216 3.65e-23 a.4.1.9,a.121.1.1 106428,106429 1qvtA 194 3.77e-23 a.4.1.9,a.121.1.1 104602,104603 2ibdA 204 5.27e-23 3c2bA 221 8.15e-23 3bhqA 211 9.32e-23 1zkgA 212 1.03e-22 a.4.1.9,a.121.1.1 125194,125195 2g7sA 194 1.10e-22 a.4.1.9,a.121.1.1 134737,134738 2qtqA 213 1.38e-22 3cdlA 203 1.44e-22 1z77A 200 1.46e-22 a.4.1.9,a.121.1.1 124588,124589 2f07A 197 1.68e-22 3crjA 199 2.46e-22 2fq4A 192 2.93e-22 a.4.1.9,a.121.1.1 133937,133938 2id6A 202 3.59e-22 2qcoA 210 3.66e-22 3bruA 222 3.74e-22 2iekA 200 4.60e-22 2raeA 207 4.82e-22 2rasA 212 5.29e-22 3bcgA 215 6.20e-22 1ui5A 215 6.33e-22 a.4.1.9,a.121.1.1 107856,107857 3cwrA 208 6.95e-22 2zb9A 214 7.75e-22 2nx4A 194 1.05e-21 1pb6A 212 1.10e-21 a.4.1.9,a.121.1.1 88017,88018 2genA 197 1.37e-21 a.4.1.9,a.121.1.1 135062,135063 2gfnA 209 1.39e-21 a.4.1.9,a.121.1.1 135101,135102 2o7tA 199 2.02e-21 2qkoA 215 2.83e-21 2hytA 197 3.05e-21 2dg7A 195 3.92e-21 2id3A 225 5.59e-21 a.4.1.9,a.121.1.1 137261,137262 2qibA 231 6.55e-21 2zcmA 192 7.27e-21 2iaiA 230 9.65e-21 2g3bA 208 9.92e-21 a.4.1.9,a.121.1.1 134558,134559 2jj7A 186 1.18e-20 2tct 207 1.22e-20 1sgmA 191 2.66e-20 a.4.1.9,a.121.1.1 105537,105538 2d6yA 202 2.68e-20 a.4.1.9,a.121.1.1 131313,131314 2np5A 203 2.72e-20 a.4.1.9,a.121.1.1 138424,138425 2optA 234 3.15e-20 2i10A 202 3.32e-20 a.4.1.9,a.121.1.1 136960,136961 1zk8A 183 3.44e-20 a.4.1.9,a.121.1.1 125177,125178 3cjdA 198 3.71e-20 3b81A 203 4.13e-20 3bniA 229 7.70e-20 2rekA 199 8.17e-20 2o7oA 207 8.26e-20 a.4.1.9,a.121.1.1 138930,138931 2of7A 260 9.93e-20 2iu5A 195 1.25e-19 2fx0A 201 1.30e-19 a.4.1.9,a.121.1.1 134269,134270 3colA 196 1.37e-19 3bjbA 207 1.45e-19 2hkuA 215 1.73e-19 3bqyA 209 2.19e-19 2fbqA 235 2.66e-19 a.4.1.9,a.121.1.1 133256,133257 2fd5A 180 3.46e-19 a.4.1.9,a.121.1.1 133291,133292 2g7gA 213 4.06e-19 a.4.1.9,a.121.1.1 134732,134733 2oerA 214 5.56e-19 2q24A 194 5.85e-19 2oi8A 216 9.01e-19 2dg8A 193 1.04e-18 1a6i 217 1.12e-18 2vprA 207 1.49e-18 1z0xA 220 2.07e-18 a.4.1.9,a.121.1.1 124334,124335 2yveA 185 2.57e-18 2guhA 214 2.70e-18 1v7bA 185 3.15e-18 a.4.1.9,a.121.1.1 119861,119862 1t33A 224 4.14e-18 a.4.1.9,a.121.1.1 106295,106296 2eh3A 179 4.45e-18 2qwtA 196 4.82e-18 2hxoA 237 4.94e-18 2g7lA 243 1.50e-15 a.4.1.9,a.121.1.1 134734,134735 2jn6A 97 0.9471 1hlvA 131 1.085 a.4.1.7,a.4.1.7 65854,65855 2ev0A 142 1.790 a.4.5.24,a.76.1.1 132413,132414 2dt5A 211 2.507 a.4.5.38,c.2.1.12 131708,131709 2qq9A 226 2.526 2v9vA 135 4.523 2fnaA 357 5.790 a.4.5.11,c.37.1.20 133809,133810 1bl0A 129 7.479 a.4.1.8,a.4.1.8 16053,16054 2pg4A 95 7.594 1z5hA 780 8.119 2gsqA 202 8.463 a.45.1.1,c.47.1.5 17715,33009 2ondA 308 8.669 2rn7A 108 9.806 3co4A 312 10.33 1x9fB 145 11.00 a.1.1.2 114984 2ahrA 259 11.76 a.100.1.10,c.2.1.6 126775,126776 1zy9A 564 12.46 b.30.5.11,c.1.8.13 125813,125814 1nhyA 219 13.04 a.45.1.1,c.47.1.5 80520,80521 1xcbA 211 13.27 a.4.5.38,c.2.1.12 109552,109553 1xsvA 113 14.02 a.4.13.3 116003 1zcaA 359 14.55 a.66.1.1,c.37.1.8 124897,124898 2ho1A 252 15.34 1ji6A 589 16.36 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 2qguA 211 17.27 2v1xA 591 17.59 1s69A 124 19.06 a.1.1.1 105305 2ftsA 419 19.51 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1a5tA 334 19.56 a.80.1.1,c.37.1.20 18450,32423 1fseA 74 21.81 a.4.6.2 60000 1dlyA 164 21.86 a.1.1.1 14983 1wsuA 124 22.12 a.4.5.35,a.4.5.35 121245,121246 2zfoC 147 22.53 1oywA 523 23.07 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2nszA 129 23.47 a.118.1.14 138560 1a0pA 290 23.77 a.60.9.1,d.163.1.1 18105,42165 1x9fA 151 24.76 a.1.1.2 114983 1yhuB 144 26.58 1xo0A 324 26.69 a.60.9.1,d.163.1.1 115674,115675 1wa5B 530 26.77 a.118.1.1 114432 1tu7A 208 28.67 a.45.1.1,c.47.1.5 112653,112654 1l3lA 234 28.80 a.4.6.2,d.110.5.1 73541,73542 1pq1A 196 29.36 f.1.4.1 94986 1ee4A 423 29.51 a.118.1.1 19128 1xqsA 280 29.58 a.118.1.21 122243 1yqgA 263 29.91 2dh2A 424 29.95 1u8bA 133 30.14 1lmb3 92 31.67 1zljA 78 31.69 2dnxA 130 34.08 1je8A 82 34.24 a.4.6.2 77108 2ifuA 307 36.77 1xqrA 296 36.79 a.118.1.21 122241 1v2aA 210 37.23 a.45.1.1,c.47.1.5 100263,100264 1ny1A 240 38.58 c.6.2.3 86395 1sfxA 109 39.33 a.4.5.50 105505 1oe8A 211 39.99 a.45.1.1,c.47.1.5 86905,86906 2c1mA 424 40.18 1kgnA 329 41.11 a.25.1.2 68584 2btzA 394 41.39 1lbkA 208 41.59 a.45.1.1,c.47.1.5 73809,73810 1b0nA 111 41.65 a.34.1.1,a.35.1.3 17001,17064 1ijbA 202 43.39 c.62.1.1 71229 2q4uA 272 43.88 1ukz 203 44.09 1y7yA 74 45.85 a.35.1.3 122729 2plc 274 48.15 2ictA 94 48.75 2ii2A 310 49.02 2vq2A 225 49.10 1jdhA 529 49.14 a.118.1.1 66549 2izzA 322 49.72 2erbA 125 50.41 2ieeA 271 50.85 1on2A 142 51.36 a.4.5.24,a.76.1.1 87103,87104 1xnfA 275 51.64 a.118.8.1 115580 1u61A 138 52.01 a.149.1.1 107696 1lrvA 244 52.70 a.118.1.5 19146 1mkmA 249 53.82 a.4.5.33,d.110.2.2 79242,79243 2pvuA 272 54.61 1kz7A 353 55.74 a.87.1.1,b.55.1.1 73333,73334 2a2mA 258 56.34 a.132.1.3 126039 1utxA 66 57.92 a.35.1.3 108034 1e6cA 173 58.44 c.37.1.2 59296 2zfoB 142 58.74 1ouvA 273 60.71 a.118.18.1 93570 2o8xA 70 60.97 1y89A 238 61.60 2bk9A 153 62.23 2o3fA 111 63.49 2a2rA 210 63.70 a.45.1.1,c.47.1.5 126058,126059 2nrlA 147 63.97 1gqnA 252 64.10 c.1.10.1 90514 2o1mA 258 64.36 1lucA 355 64.56 c.1.16.1 29547 1resA 43 64.77 a.4.1.2 16023 1rzsA 61 64.82 a.35.1.2 105139 1a0p 290 65.15 2graA 277 65.51 1ngkA 128 66.70 a.1.1.1 85673 2ihdA 155 66.75 1b6g 310 68.16 2cx5A 158 68.17 1tqhA 247 69.14 c.69.1.29 107225 1y9qA 192 69.34 a.35.1.8,b.82.1.15 116592,116593 1unlD 208 69.74 a.74.1.1 113326 1px5A 349 69.88 a.160.1.2,d.218.1.6 95277,95278 2bnmA 198 70.35 a.35.1.3,b.82.1.10 128835,128836 1vflA 356 70.63 c.1.9.1 120041 1knwA 425 72.42 b.49.2.3,c.1.6.1 90969,90970 1fx7A 230 72.56 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2z0xA 158 72.73 1dlcA 584 74.02 b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 1ho8A 480 74.64 a.118.1.9 61107 2qwwA 154 76.39 2pl2A 217 76.78 1f1eA 154 77.64 a.22.1.2 64927 1vh0A 161 81.23 c.116.1.3 100626 2zfdA 226 83.92 2rfpA 171 85.05 2bkmA 128 87.04