# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2uxuA 210 4.56e-20 2qtqA 213 7.02e-20 2pbxA 203 8.07e-20 1t56A 216 1.08e-19 a.4.1.9,a.121.1.1 106428,106429 1vi0A 206 1.14e-19 a.4.1.9,a.121.1.1 100720,100721 2f07A 197 1.65e-19 2ibdA 204 2.25e-19 3cdlA 203 2.59e-19 2hyjA 200 3.11e-19 2g7sA 194 4.69e-19 a.4.1.9,a.121.1.1 134737,134738 3crjA 199 5.48e-19 1qvtA 194 7.15e-19 a.4.1.9,a.121.1.1 104602,104603 2rasA 212 7.20e-19 3bruA 222 7.47e-19 2genA 197 7.49e-19 a.4.1.9,a.121.1.1 135062,135063 3bhqA 211 9.66e-19 1jt6A 188 1.01e-18 a.4.1.9,a.121.1.1 67247,67248 3ccyA 203 1.12e-18 2fq4A 192 1.34e-18 a.4.1.9,a.121.1.1 133937,133938 3bcgA 215 1.40e-18 1rktA 205 1.53e-18 a.4.1.9,a.121.1.1 97623,97624 1pb6A 212 1.95e-18 a.4.1.9,a.121.1.1 88017,88018 1zkgA 212 2.02e-18 a.4.1.9,a.121.1.1 125194,125195 3c2bA 221 2.34e-18 1z77A 200 2.68e-18 a.4.1.9,a.121.1.1 124588,124589 2nx4A 194 3.23e-18 2gfnA 209 4.06e-18 a.4.1.9,a.121.1.1 135101,135102 1ui5A 215 4.48e-18 a.4.1.9,a.121.1.1 107856,107857 3cjdA 198 5.72e-18 2hytA 197 6.67e-18 2id3A 225 7.20e-18 a.4.1.9,a.121.1.1 137261,137262 3cwrA 208 7.44e-18 2jj7A 186 7.57e-18 2dg7A 195 7.68e-18 2iaiA 230 8.32e-18 2raeA 207 9.45e-18 2id6A 202 1.05e-17 2qcoA 210 1.26e-17 2iekA 200 1.43e-17 2zb9A 214 1.77e-17 2g3bA 208 1.90e-17 a.4.1.9,a.121.1.1 134558,134559 1sgmA 191 2.77e-17 a.4.1.9,a.121.1.1 105537,105538 2i10A 202 2.96e-17 a.4.1.9,a.121.1.1 136960,136961 2o7tA 199 3.04e-17 3b81A 203 3.36e-17 2fx0A 201 6.07e-17 a.4.1.9,a.121.1.1 134269,134270 2qkoA 215 6.54e-17 2d6yA 202 8.16e-17 a.4.1.9,a.121.1.1 131313,131314 1zk8A 183 1.07e-16 a.4.1.9,a.121.1.1 125177,125178 2qibA 231 1.42e-16 2np5A 203 1.48e-16 a.4.1.9,a.121.1.1 138424,138425 2of7A 260 1.91e-16 2optA 234 3.05e-16 2hkuA 215 3.11e-16 3bniA 229 3.29e-16 3colA 196 3.38e-16 2rekA 199 3.55e-16 2zcmA 192 3.61e-16 3bjbA 207 3.81e-16 2fd5A 180 4.59e-16 a.4.1.9,a.121.1.1 133291,133292 2tct 207 5.76e-16 2fbqA 235 6.26e-16 a.4.1.9,a.121.1.1 133256,133257 2q24A 194 6.58e-16 2oerA 214 7.66e-16 2qwtA 196 7.93e-16 3bqyA 209 9.89e-16 2guhA 214 1.18e-15 2iu5A 195 1.70e-15 2o7oA 207 1.82e-15 a.4.1.9,a.121.1.1 138930,138931 2vprA 207 2.93e-15 1z0xA 220 2.98e-15 a.4.1.9,a.121.1.1 124334,124335 1a6i 217 3.24e-15 2dg8A 193 4.68e-15 2oi8A 216 7.64e-15 2yveA 185 1.32e-14 2eh3A 179 1.42e-14 1v7bA 185 1.73e-14 a.4.1.9,a.121.1.1 119861,119862 2g7gA 213 2.81e-14 a.4.1.9,a.121.1.1 134732,134733 1t33A 224 8.92e-14 a.4.1.9,a.121.1.1 106295,106296 2hxoA 237 1.03e-13 2g7lA 243 3.59e-13 a.4.1.9,a.121.1.1 134734,134735 2gsqA 202 2.216 a.45.1.1,c.47.1.5 17715,33009 2jn6A 97 2.964 1hlvA 131 4.741 a.4.1.7,a.4.1.7 65854,65855 2rn7A 108 9.388 1tu7A 208 10.91 a.45.1.1,c.47.1.5 112653,112654 2qq9A 226 12.03 1ag9A 175 12.10 c.23.5.1 31178 1on2A 142 14.85 a.4.5.24,a.76.1.1 87103,87104 1wsuA 124 15.38 a.4.5.35,a.4.5.35 121245,121246 1ny1A 240 16.14 c.6.2.3 86395 1zcaA 359 18.07 a.66.1.1,c.37.1.8 124897,124898 2pg4A 95 19.15 1xcbA 211 19.49 a.4.5.38,c.2.1.12 109552,109553 1ijbA 202 19.91 c.62.1.1 71229 1k3yA 221 21.13 a.45.1.1,c.47.1.5 77245,77246 1vpbA 451 21.33 d.283.1.1 113950 1lbkA 208 22.28 a.45.1.1,c.47.1.5 73809,73810 1sfxA 109 23.33 a.4.5.50 105505 2dt5A 211 23.89 a.4.5.38,c.2.1.12 131708,131709 2ev0A 142 24.59 a.4.5.24,a.76.1.1 132413,132414 2pzzA 147 25.53 1u8bA 133 25.76 1zy9A 564 26.40 b.30.5.11,c.1.8.13 125813,125814 1n3yA 198 26.60 c.62.1.1 79976 1ji6A 589 26.81 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 2am1A 454 27.05 1xjdA 345 29.07 d.144.1.7 115388 17gsA 210 30.49 a.45.1.1,c.47.1.5 17524,32818 2pbqA 178 30.64 1ykwA 435 31.32 c.1.14.1,d.58.9.1 123565,123566 1ciyA 590 31.70 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 2h09A 155 34.27 2pvuA 272 34.54 3bbyA 215 35.31 1b0nA 111 35.37 a.34.1.1,a.35.1.3 17001,17064 1a0dA 440 37.88 c.1.15.3 29533 1v2aA 210 39.35 a.45.1.1,c.47.1.5 100263,100264 1tadA 324 41.53 a.66.1.1,c.37.1.8 18194,32077 2a2rA 210 44.40 a.45.1.1,c.47.1.5 126058,126059 1jlvA 209 45.41 a.45.1.1,c.47.1.5 71729,71730 2imiA 221 45.52 3co4A 312 49.64 2amxA 376 49.94 c.1.9.1 127024 2plc 274 50.13 1oe8A 211 50.88 a.45.1.1,c.47.1.5 86905,86906 1y7yA 74 50.94 a.35.1.3 122729 1tw9A 206 51.45 a.45.1.1,c.47.1.5 107381,107382 1pgtA 210 51.47 a.45.1.1,c.47.1.5 17515,32809 1vf1A 229 52.30 1resA 43 55.31 a.4.1.2 16023 1shuX 182 56.13 c.62.1.1 98882 3bjqA 316 56.14 2qvwA 756 57.64 2za4B 90 58.57 1wtyA 119 60.58 a.24.16.2 114880 2ew8A 249 62.70 c.2.1.2 132447 2f4mB 61 65.27 a.189.1.1 132931 1xsvA 113 66.15 a.4.13.3 116003 2bnmA 198 67.62 a.35.1.3,b.82.1.10 128835,128836 2oi2A 292 71.50 1x8bA 289 71.54 1rd5A 262 71.61 c.1.2.4 111772 2cz2A 223 71.72 2ondA 308 71.85 1uyrA 737 73.25 c.14.1.4,c.14.1.4 100188,100189 2ftsA 419 74.37 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1m0uA 249 74.83 a.45.1.1,c.47.1.5 78359,78360 1b4pA 217 75.29 a.45.1.1,c.47.1.5 83158,83159 1zljA 78 75.39 1jlwA 219 76.07 a.45.1.1,c.47.1.5 71741,71742 2h9aB 310 76.31 1yixA 265 76.90 c.1.9.12 123371 1y9qA 192 77.45 a.35.1.8,b.82.1.15 116592,116593 2v25A 259 78.94 1h97A 147 81.23 a.1.1.2 60812 1vzoA 355 81.32 d.144.1.7 108971 2i3dA 249 84.18 2dc5A 231 87.97 3b7hA 78 88.24 1jfrA 262 88.28 c.69.1.16 34724 1lmb3 92 88.41 1oktA 211 88.64 a.45.1.1,c.47.1.5 93272,93273 1vbuA 328 89.73 c.1.8.3 119963 2qwwA 154 89.90 2v9vA 135 89.95