# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 1.52e-21 1vi0A 206 1.85e-21 a.4.1.9,a.121.1.1 100720,100721 2uxuA 210 2.26e-21 2ibdA 204 2.47e-21 1t56A 216 4.78e-21 a.4.1.9,a.121.1.1 106428,106429 2hyjA 200 4.84e-21 3ccyA 203 5.15e-21 2qtqA 213 5.63e-21 1rktA 205 6.34e-21 a.4.1.9,a.121.1.1 97623,97624 2g7sA 194 7.64e-21 a.4.1.9,a.121.1.1 134737,134738 1qvtA 194 8.83e-21 a.4.1.9,a.121.1.1 104602,104603 3bhqA 211 9.82e-21 1jt6A 188 1.04e-20 a.4.1.9,a.121.1.1 67247,67248 2rasA 212 1.18e-20 1ui5A 215 1.54e-20 a.4.1.9,a.121.1.1 107856,107857 2f07A 197 1.64e-20 1pb6A 212 1.73e-20 a.4.1.9,a.121.1.1 88017,88018 2fq4A 192 2.21e-20 a.4.1.9,a.121.1.1 133937,133938 1z77A 200 2.25e-20 a.4.1.9,a.121.1.1 124588,124589 3c2bA 221 2.27e-20 3bruA 222 2.52e-20 3crjA 199 2.77e-20 1zkgA 212 2.83e-20 a.4.1.9,a.121.1.1 125194,125195 2iekA 200 3.71e-20 2id6A 202 3.91e-20 3cwrA 208 4.07e-20 2genA 197 4.25e-20 a.4.1.9,a.121.1.1 135062,135063 3cdlA 203 4.67e-20 3bcgA 215 4.91e-20 2raeA 207 7.55e-20 2hytA 197 1.03e-19 2zb9A 214 1.19e-19 2nx4A 194 1.67e-19 2jj7A 186 1.94e-19 2qcoA 210 1.96e-19 2dg7A 195 2.16e-19 2o7tA 199 2.17e-19 2gfnA 209 2.45e-19 a.4.1.9,a.121.1.1 135101,135102 2iaiA 230 2.92e-19 2zcmA 192 3.02e-19 2qkoA 215 3.25e-19 2qibA 231 4.10e-19 2id3A 225 6.52e-19 a.4.1.9,a.121.1.1 137261,137262 2tct 207 6.81e-19 2i10A 202 9.23e-19 a.4.1.9,a.121.1.1 136960,136961 1sgmA 191 1.01e-18 a.4.1.9,a.121.1.1 105537,105538 3cjdA 198 1.04e-18 1zk8A 183 1.06e-18 a.4.1.9,a.121.1.1 125177,125178 2d6yA 202 1.18e-18 a.4.1.9,a.121.1.1 131313,131314 2fx0A 201 1.47e-18 a.4.1.9,a.121.1.1 134269,134270 3b81A 203 1.91e-18 2optA 234 2.01e-18 2g3bA 208 2.47e-18 a.4.1.9,a.121.1.1 134558,134559 3bqyA 209 3.17e-18 2rekA 199 3.41e-18 3colA 196 3.72e-18 3bjbA 207 4.11e-18 2fbqA 235 4.65e-18 a.4.1.9,a.121.1.1 133256,133257 2o7oA 207 4.71e-18 a.4.1.9,a.121.1.1 138930,138931 3bniA 229 5.62e-18 2hkuA 215 7.42e-18 2fd5A 180 7.95e-18 a.4.1.9,a.121.1.1 133291,133292 2np5A 203 8.31e-18 a.4.1.9,a.121.1.1 138424,138425 2q24A 194 9.28e-18 2of7A 260 1.52e-17 2iu5A 195 2.48e-17 2vprA 207 2.68e-17 2g7gA 213 3.15e-17 a.4.1.9,a.121.1.1 134732,134733 1a6i 217 4.18e-17 2dg8A 193 4.22e-17 2oi8A 216 4.63e-17 1z0xA 220 5.06e-17 a.4.1.9,a.121.1.1 124334,124335 2oerA 214 5.45e-17 2guhA 214 6.27e-17 2eh3A 179 7.21e-17 2qwtA 196 9.42e-17 1v7bA 185 1.72e-16 a.4.1.9,a.121.1.1 119861,119862 2yveA 185 1.76e-16 2hxoA 237 2.87e-16 1t33A 224 8.40e-16 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 3.39e-14 a.4.1.9,a.121.1.1 134734,134735 2jn6A 97 0.4061 1hlvA 131 0.4370 a.4.1.7,a.4.1.7 65854,65855 2qq9A 226 0.7940 2dt5A 211 1.124 a.4.5.38,c.2.1.12 131708,131709 2ev0A 142 1.188 a.4.5.24,a.76.1.1 132413,132414 2v9vA 135 3.013 2rn7A 108 3.040 2pg4A 95 4.241 1xsvA 113 4.605 a.4.13.3 116003 1wsuA 124 4.743 a.4.5.35,a.4.5.35 121245,121246 1sfxA 109 5.055 a.4.5.50 105505 1xcbA 211 6.445 a.4.5.38,c.2.1.12 109552,109553 1on2A 142 6.874 a.4.5.24,a.76.1.1 87103,87104 2ahrA 259 8.129 a.100.1.10,c.2.1.6 126775,126776 2h09A 155 8.334 1bl0A 129 8.700 a.4.1.8,a.4.1.8 16053,16054 2v1xA 591 10.07 1nhyA 219 14.35 a.45.1.1,c.47.1.5 80520,80521 1wa5B 530 15.01 a.118.1.1 114432 2ftsA 419 15.95 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 3co4A 312 17.55 1l3lA 234 17.56 a.4.6.2,d.110.5.1 73541,73542 1y7yA 74 19.12 a.35.1.3 122729 2f4mB 61 19.37 a.189.1.1 132931 2pl2A 217 19.48 2dtrA 226 19.71 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2o3fA 111 20.24 1zcaA 359 20.24 a.66.1.1,c.37.1.8 124897,124898 1v2aA 210 20.27 a.45.1.1,c.47.1.5 100263,100264 3b7hA 78 24.80 2ictA 94 25.93 1fseA 74 26.99 a.4.6.2 60000 1je8A 82 27.26 a.4.6.2 77108 1zljA 78 27.82 1fx7A 230 28.94 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1ny1A 240 29.07 c.6.2.3 86395 1y9qA 192 29.62 a.35.1.8,b.82.1.15 116592,116593 2gsqA 202 29.90 a.45.1.1,c.47.1.5 17715,33009 1utxA 66 31.01 a.35.1.3 108034 1tw9A 206 31.10 a.45.1.1,c.47.1.5 107381,107382 1resA 43 31.58 a.4.1.2 16023 2dh2A 424 31.74 2izzA 322 32.41 2nszA 129 32.79 a.118.1.14 138560 2b5aA 77 34.48 a.35.1.3 127882 1ijbA 202 35.31 c.62.1.1 71229 1b0nA 111 36.66 a.34.1.1,a.35.1.3 17001,17064 2rcyA 262 38.72 1p2xA 159 39.11 a.40.1.1 104062 1xo0A 324 39.80 a.60.9.1,d.163.1.1 115674,115675 2pvuA 272 40.66 1zy9A 564 41.87 b.30.5.11,c.1.8.13 125813,125814 2ebyA 113 42.41 1u8bA 133 42.59 2de3A 365 43.33 1z9hA 290 43.48 a.45.1.1,c.47.1.5 124758,124759 1xm9A 457 43.67 a.118.1.24 122142 2imsA 171 44.73 2graA 277 44.78 1px5A 349 45.58 a.160.1.2,d.218.1.6 95277,95278 1g7oA 215 48.38 a.45.1.1,c.47.1.5 60332,60333 2plcA 274 48.92 c.1.18.2 29614 2hq2A 354 49.33 e.62.1.1 136656 2iyvA 184 50.27 c.37.1.2 137812 1mkmA 249 51.90 a.4.5.33,d.110.2.2 79242,79243 2j0pA 345 52.55 e.62.1.1 137903 1f1eA 154 53.38 a.22.1.2 64927 2vg3A 284 54.13 1dlyA 164 54.37 a.1.1.1 14983 2e2eA 177 54.53 1a0dA 440 55.07 c.1.15.3 29533 1ouvA 273 55.44 a.118.18.1 93570 1yqgA 263 56.32 2c3nA 247 57.25 1kz7A 353 57.42 a.87.1.1,b.55.1.1 73333,73334 1r8eA 278 57.53 a.6.1.3,d.60.1.1 104843,104844 1vh0A 161 58.45 c.116.1.3 100626 1pq1A 196 58.66 f.1.4.1 94986 1gqnA 252 59.75 c.1.10.1 90514 1rzsA 61 59.77 a.35.1.2 105139 2r1jL 68 63.23 2cro 71 63.30 2rfpA 171 65.10 1wtyA 119 65.89 a.24.16.2 114880 1bw0A 416 66.03 c.67.1.1 34385 1x9fB 145 66.14 a.1.1.2 114984 1r69A 69 66.37 a.35.1.2 17028 1m48A 133 66.51 a.26.1.2 74443 1s69A 124 67.18 a.1.1.1 105305 1r69 69 68.43 1aisB 200 69.06 a.74.1.2,a.74.1.2 18384,18385 1bqcA 302 69.39 c.1.8.3 28831 2d4zA 250 69.57 d.37.1.1,d.37.1.1 131260,131261 1adrA 76 69.60 a.35.1.2 17042 2qvwA 756 69.80 3cmgA 667 70.66 1z91A 147 71.42 a.4.5.28 124736 1wd6A 123 71.67 d.58.4.12 114525 2bnmA 198 72.34 a.35.1.3,b.82.1.10 128835,128836 1oywA 523 72.35 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1a0p 290 73.83 1a0cA 438 74.60 c.1.15.3 29529 1lrvA 244 75.34 a.118.1.5 19146 3cecA 104 77.39 1knwA 425 78.12 b.49.2.3,c.1.6.1 90969,90970 2fr1A 486 81.17 c.2.1.2,c.2.1.2 133961,133962 2d1hA 109 81.58 a.4.5.50 131125 2on5A 206 83.04 3ciwA 348 84.09 2yxoA 267 84.46 1lmb3 92 84.80 1aj2 282 86.10 1k0dA 260 88.73 a.45.1.1,c.47.1.5 67930,67931