# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 4.75e-23 2uxuA 210 1.70e-22 1vi0A 206 1.73e-22 a.4.1.9,a.121.1.1 100720,100721 1t56A 216 2.01e-22 a.4.1.9,a.121.1.1 106428,106429 2ibdA 204 2.56e-22 3ccyA 203 4.64e-22 2g7sA 194 6.99e-22 a.4.1.9,a.121.1.1 134737,134738 2hyjA 200 7.18e-22 1rktA 205 8.54e-22 a.4.1.9,a.121.1.1 97623,97624 2qtqA 213 8.66e-22 1jt6A 188 1.18e-21 a.4.1.9,a.121.1.1 67247,67248 1pb6A 212 1.32e-21 a.4.1.9,a.121.1.1 88017,88018 1qvtA 194 1.34e-21 a.4.1.9,a.121.1.1 104602,104603 3bhqA 211 1.61e-21 1ui5A 215 1.88e-21 a.4.1.9,a.121.1.1 107856,107857 2f07A 197 2.01e-21 3bcgA 215 2.03e-21 2rasA 212 2.13e-21 3c2bA 221 2.69e-21 3cdlA 203 2.75e-21 1z77A 200 3.33e-21 a.4.1.9,a.121.1.1 124588,124589 2genA 197 3.55e-21 a.4.1.9,a.121.1.1 135062,135063 3crjA 199 3.58e-21 3bruA 222 3.62e-21 1zkgA 212 3.80e-21 a.4.1.9,a.121.1.1 125194,125195 2fq4A 192 4.10e-21 a.4.1.9,a.121.1.1 133937,133938 2iekA 200 5.35e-21 2id6A 202 5.48e-21 3cwrA 208 7.96e-21 2raeA 207 9.33e-21 2id3A 225 9.72e-21 a.4.1.9,a.121.1.1 137261,137262 2jj7A 186 1.29e-20 2hytA 197 1.92e-20 2dg7A 195 2.45e-20 2zb9A 214 2.85e-20 2nx4A 194 3.04e-20 2iaiA 230 3.90e-20 2o7tA 199 3.92e-20 2qcoA 210 4.15e-20 2gfnA 209 4.25e-20 a.4.1.9,a.121.1.1 135101,135102 2zcmA 192 5.52e-20 2qkoA 215 8.07e-20 2qibA 231 9.48e-20 1sgmA 191 1.18e-19 a.4.1.9,a.121.1.1 105537,105538 2tct 207 1.30e-19 1zk8A 183 1.72e-19 a.4.1.9,a.121.1.1 125177,125178 3cjdA 198 1.97e-19 2i10A 202 2.25e-19 a.4.1.9,a.121.1.1 136960,136961 3bqyA 209 2.35e-19 2fbqA 235 2.54e-19 a.4.1.9,a.121.1.1 133256,133257 2d6yA 202 2.63e-19 a.4.1.9,a.121.1.1 131313,131314 3b81A 203 4.09e-19 2optA 234 4.30e-19 2g3bA 208 5.05e-19 a.4.1.9,a.121.1.1 134558,134559 2fx0A 201 5.70e-19 a.4.1.9,a.121.1.1 134269,134270 3bjbA 207 5.70e-19 2rekA 199 1.07e-18 3colA 196 1.15e-18 3bniA 229 1.22e-18 2hkuA 215 1.30e-18 2iu5A 195 1.77e-18 2fd5A 180 2.01e-18 a.4.1.9,a.121.1.1 133291,133292 2np5A 203 2.09e-18 a.4.1.9,a.121.1.1 138424,138425 2o7oA 207 2.29e-18 a.4.1.9,a.121.1.1 138930,138931 2q24A 194 2.40e-18 2of7A 260 4.77e-18 2g7gA 213 6.62e-18 a.4.1.9,a.121.1.1 134732,134733 1a6i 217 7.72e-18 2dg8A 193 8.18e-18 2vprA 207 8.55e-18 1z0xA 220 9.76e-18 a.4.1.9,a.121.1.1 124334,124335 2oerA 214 1.10e-17 2oi8A 216 1.26e-17 2hxoA 237 1.90e-17 2eh3A 179 2.49e-17 2guhA 214 2.57e-17 2qwtA 196 3.13e-17 2yveA 185 4.31e-17 1v7bA 185 4.76e-17 a.4.1.9,a.121.1.1 119861,119862 1t33A 224 2.49e-16 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 1.21e-14 a.4.1.9,a.121.1.1 134734,134735 2qq9A 226 0.8831 1hlvA 131 1.117 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 1.165 2ev0A 142 1.819 a.4.5.24,a.76.1.1 132413,132414 2dt5A 211 2.564 a.4.5.38,c.2.1.12 131708,131709 1zy9A 564 3.554 b.30.5.11,c.1.8.13 125813,125814 2v9vA 135 4.380 1p2xA 159 4.969 a.40.1.1 104062 1qv1A 195 6.505 a.39.1.5 96347 1wsuA 124 8.432 a.4.5.35,a.4.5.35 121245,121246 2pg4A 95 8.522 1xsvA 113 10.47 a.4.13.3 116003 1on2A 142 11.28 a.4.5.24,a.76.1.1 87103,87104 1sfxA 109 13.34 a.4.5.50 105505 2h09A 155 13.65 1ny1A 240 14.18 c.6.2.3 86395 2ieaA 886 14.71 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296 2ahrA 259 14.82 a.100.1.10,c.2.1.6 126775,126776 2ia2A 265 14.85 1sb8A 352 17.56 c.2.1.2 105410 1wa5B 530 17.90 a.118.1.1 114432 2yr1A 257 18.14 1vjjA 692 18.24 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 1v7pC 200 18.45 c.62.1.1 108408 1ijbA 202 18.99 c.62.1.1 71229 2pzzA 147 19.35 2qguA 211 19.44 1bl0A 129 22.09 a.4.1.8,a.4.1.8 16053,16054 2gfhA 260 22.77 c.108.1.6 135096 1n3yA 198 23.68 c.62.1.1 79976 1d0cA 444 24.49 d.174.1.1 64769 1a0dA 440 25.30 c.1.15.3 29533 1xqrA 296 26.69 a.118.1.21 122241 2d4zA 250 26.98 d.37.1.1,d.37.1.1 131260,131261 2pl2A 217 28.08 2f4mB 61 28.37 a.189.1.1 132931 2scpA 174 28.78 a.39.1.5 17256 2imsA 171 28.83 2rn7A 108 29.41 2p4qA 497 29.63 1vhuA 211 30.88 c.50.1.2 100703 1p0kA 349 30.96 c.1.4.1 87648 2dtvA 397 32.87 1xcbA 211 33.30 a.4.5.38,c.2.1.12 109552,109553 1ah7 245 33.36 2v1xA 591 34.29 1q06A 135 34.30 a.6.1.3 95493 2dtrA 226 34.79 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2gsqA 202 35.03 a.45.1.1,c.47.1.5 17715,33009 2nszA 129 36.87 a.118.1.14 138560 1l3lA 234 36.94 a.4.6.2,d.110.5.1 73541,73542 2ftsA 419 37.28 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 2o09A 189 37.81 1tf4A 605 38.81 a.102.1.2,b.2.2.2 18827,22393 1oywA 523 40.24 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1wtyA 119 40.37 a.24.16.2 114880 1dlyA 164 40.49 a.1.1.1 14983 1qs0A 407 42.37 c.36.1.11 31829 1vh0A 161 42.56 c.116.1.3 100626 1y7yA 74 42.85 a.35.1.3 122729 2eplX 627 42.89 2qt3A 403 43.87 2c2aA 258 43.96 a.30.2.1,d.122.1.3 129662,129663 1v2aA 210 44.19 a.45.1.1,c.47.1.5 100263,100264 1fx7A 230 44.38 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2pgd 482 44.46 1o26A 232 44.76 d.207.1.1 86566 2vg3A 284 45.50 2rfpA 171 45.54 1x9fB 145 45.66 a.1.1.2 114984 1r1dA 247 45.99 c.69.1.29 96813 2o3fA 111 47.53 2pjoA 268 49.80 2bnxA 386 50.07 a.118.1.23 128861 2e2eA 177 51.09 1vljA 407 51.52 e.22.1.2 108832 1phkA 298 52.83 d.144.1.7 41635 1z45A 699 52.88 b.30.5.4,c.2.1.2 124427,124428 2i9uA 439 53.50 2ghaA 382 53.96 1kewA 361 54.69 c.2.1.2 68544 1g6aA 271 54.71 e.3.1.1 42704 2a5sA 284 55.68 c.94.1.1 126178 3b7hA 78 57.44 1s69A 124 57.54 a.1.1.1 105305 1vflA 356 57.85 c.1.9.1 120041 1qusA 322 58.22 d.2.1.6 36991 1odoA 408 58.96 a.104.1.1 92783 1f1eA 154 59.67 a.22.1.2 64927 1gqnA 252 60.71 c.1.10.1 90514 1ah7A 245 61.71 a.124.1.1 19339 2de3A 365 62.66 1wyuB 474 62.98 c.67.1.7 121453 2rcyA 262 65.97 2ictA 94 66.24 2plcA 274 66.47 c.1.18.2 29614 1zljA 78 66.51 1pq1A 196 66.85 f.1.4.1 94986 1o7eA 276 66.86 e.3.1.1 92622 1fseA 74 67.69 a.4.6.2 60000 1y1xA 191 67.77 a.39.1.8 116374 1ia8A 289 69.05 d.144.1.7 62112 2pvuA 272 69.59 2f6kA 307 69.65 c.1.9.15 133047 3cc1A 433 70.05 1resA 43 71.88 a.4.1.2 16023 1b0nA 111 72.85 a.34.1.1,a.35.1.3 17001,17064 1je8A 82 73.15 a.4.6.2 77108 2q3zA 687 74.65 1kz7A 353 74.68 a.87.1.1,b.55.1.1 73333,73334 1m48A 133 75.03 a.26.1.2 74443 1utxA 66 75.62 a.35.1.3 108034 2yzqA 282 76.47 1me8A 503 77.14 c.1.5.1 79028 1ji6A 589 77.55 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1xo0A 324 77.59 a.60.9.1,d.163.1.1 115674,115675 1t2aA 375 80.86 c.2.1.2 99078 2c3nA 247 83.68 2b5aA 77 84.96 a.35.1.3 127882 2btdA 210 88.44 1ooyA 481 89.48 c.124.1.3,c.124.1.2 93388,93389