# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2uxuA 210 7.05e-22 2pbxA 203 7.92e-22 1vi0A 206 7.98e-22 a.4.1.9,a.121.1.1 100720,100721 2ibdA 204 1.01e-21 1t56A 216 1.99e-21 a.4.1.9,a.121.1.1 106428,106429 3ccyA 203 2.20e-21 2qtqA 213 2.40e-21 1rktA 205 2.74e-21 a.4.1.9,a.121.1.1 97623,97624 2hyjA 200 2.86e-21 2g7sA 194 2.94e-21 a.4.1.9,a.121.1.1 134737,134738 1qvtA 194 4.38e-21 a.4.1.9,a.121.1.1 104602,104603 3bhqA 211 4.82e-21 1jt6A 188 6.53e-21 a.4.1.9,a.121.1.1 67247,67248 1pb6A 212 8.17e-21 a.4.1.9,a.121.1.1 88017,88018 2rasA 212 8.67e-21 2f07A 197 9.18e-21 1ui5A 215 9.21e-21 a.4.1.9,a.121.1.1 107856,107857 1z77A 200 1.02e-20 a.4.1.9,a.121.1.1 124588,124589 2fq4A 192 1.22e-20 a.4.1.9,a.121.1.1 133937,133938 3c2bA 221 1.22e-20 1zkgA 212 1.41e-20 a.4.1.9,a.121.1.1 125194,125195 3crjA 199 1.41e-20 3bruA 222 1.48e-20 2iekA 200 1.81e-20 2id6A 202 1.81e-20 2genA 197 1.89e-20 a.4.1.9,a.121.1.1 135062,135063 3cwrA 208 2.03e-20 3bcgA 215 2.12e-20 3cdlA 203 3.05e-20 2raeA 207 3.58e-20 2hytA 197 6.28e-20 2qcoA 210 8.17e-20 2zb9A 214 8.45e-20 2dg7A 195 9.12e-20 2jj7A 186 9.40e-20 2o7tA 199 1.07e-19 2nx4A 194 1.27e-19 2iaiA 230 1.52e-19 2gfnA 209 1.52e-19 a.4.1.9,a.121.1.1 135101,135102 2zcmA 192 1.71e-19 2qibA 231 1.74e-19 2qkoA 215 2.05e-19 2tct 207 2.87e-19 1sgmA 191 3.45e-19 a.4.1.9,a.121.1.1 105537,105538 3cjdA 198 4.80e-19 1zk8A 183 5.30e-19 a.4.1.9,a.121.1.1 125177,125178 2id3A 225 6.49e-19 a.4.1.9,a.121.1.1 137261,137262 2i10A 202 6.85e-19 a.4.1.9,a.121.1.1 136960,136961 2optA 234 9.86e-19 2d6yA 202 1.09e-18 a.4.1.9,a.121.1.1 131313,131314 3b81A 203 1.10e-18 2fx0A 201 1.53e-18 a.4.1.9,a.121.1.1 134269,134270 2g3bA 208 1.59e-18 a.4.1.9,a.121.1.1 134558,134559 2o7oA 207 1.66e-18 a.4.1.9,a.121.1.1 138930,138931 2rekA 199 1.78e-18 3bqyA 209 1.96e-18 3colA 196 2.09e-18 3bniA 229 2.25e-18 3bjbA 207 2.44e-18 2fbqA 235 2.65e-18 a.4.1.9,a.121.1.1 133256,133257 2fd5A 180 4.64e-18 a.4.1.9,a.121.1.1 133291,133292 2hkuA 215 4.87e-18 2q24A 194 5.30e-18 2np5A 203 6.68e-18 a.4.1.9,a.121.1.1 138424,138425 2of7A 260 8.53e-18 2g7gA 213 1.21e-17 a.4.1.9,a.121.1.1 134732,134733 2iu5A 195 1.40e-17 2vprA 207 1.62e-17 2oi8A 216 2.10e-17 1a6i 217 2.22e-17 1z0xA 220 2.41e-17 a.4.1.9,a.121.1.1 124334,124335 2dg8A 193 2.71e-17 2oerA 214 3.36e-17 2guhA 214 4.32e-17 2eh3A 179 5.42e-17 2qwtA 196 7.68e-17 2yveA 185 8.12e-17 1v7bA 185 1.03e-16 a.4.1.9,a.121.1.1 119861,119862 2hxoA 237 1.78e-16 1t33A 224 5.94e-16 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 2.15e-14 a.4.1.9,a.121.1.1 134734,134735 2jn6A 97 0.4654 1hlvA 131 0.6028 a.4.1.7,a.4.1.7 65854,65855 2qq9A 226 1.070 2ev0A 142 1.636 a.4.5.24,a.76.1.1 132413,132414 2dt5A 211 1.751 a.4.5.38,c.2.1.12 131708,131709 2rn7A 108 3.787 1xsvA 113 4.705 a.4.13.3 116003 2v9vA 135 4.905 2pg4A 95 5.227 1wsuA 124 8.921 a.4.5.35,a.4.5.35 121245,121246 1xcbA 211 9.194 a.4.5.38,c.2.1.12 109552,109553 1bl0A 129 10.99 a.4.1.8,a.4.1.8 16053,16054 1sfxA 109 11.08 a.4.5.50 105505 1zcaA 359 11.17 a.66.1.1,c.37.1.8 124897,124898 1on2A 142 12.49 a.4.5.24,a.76.1.1 87103,87104 2ahrA 259 12.94 a.100.1.10,c.2.1.6 126775,126776 2dh2A 424 13.61 3co4A 312 13.67 1ny1A 240 13.83 c.6.2.3 86395 2ftsA 419 15.46 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 2h09A 155 16.08 2v1xA 591 16.14 1nhyA 219 16.73 a.45.1.1,c.47.1.5 80520,80521 1wa5B 530 18.53 a.118.1.1 114432 1y7yA 74 18.94 a.35.1.3 122729 1ijbA 202 20.65 c.62.1.1 71229 1l3lA 234 22.29 a.4.6.2,d.110.5.1 73541,73542 2pl2A 217 22.40 2f4mB 61 25.27 a.189.1.1 132931 1zy9A 564 26.61 b.30.5.11,c.1.8.13 125813,125814 1a0dA 440 27.00 c.1.15.3 29533 2o3fA 111 27.56 1v2aA 210 29.17 a.45.1.1,c.47.1.5 100263,100264 1y9qA 192 29.63 a.35.1.8,b.82.1.15 116592,116593 2pvuA 272 30.40 2ictA 94 30.91 2gsqA 202 32.85 a.45.1.1,c.47.1.5 17715,33009 3b7hA 78 35.54 1zljA 78 37.96 2nszA 129 38.06 a.118.1.14 138560 2dtrA 226 38.51 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1gqnA 252 38.51 c.1.10.1 90514 1je8A 82 39.58 a.4.6.2 77108 2imsA 171 39.86 2plcA 274 40.15 c.1.18.2 29614 1fseA 74 41.58 a.4.6.2 60000 1utxA 66 42.46 a.35.1.3 108034 1p2xA 159 43.08 a.40.1.1 104062 1tw9A 206 43.26 a.45.1.1,c.47.1.5 107381,107382 2vg3A 284 44.10 2b5aA 77 44.30 a.35.1.3 127882 2izzA 322 45.30 1f1eA 154 45.93 a.22.1.2 64927 1g7oA 215 46.24 a.45.1.1,c.47.1.5 60332,60333 2hq2A 354 46.43 e.62.1.1 136656 2rcyA 262 47.40 2rfpA 171 48.49 1b0nA 111 48.59 a.34.1.1,a.35.1.3 17001,17064 3cmgA 667 50.51 1x9fB 145 50.83 a.1.1.2 114984 1xo0A 324 51.23 a.60.9.1,d.163.1.1 115674,115675 1a0cA 438 51.86 c.1.15.3 29529 2am1A 454 52.16 2de3A 365 52.30 2o09A 189 53.28 1resA 43 54.43 a.4.1.2 16023 1fx7A 230 54.50 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1xm9A 457 55.11 a.118.1.24 122142 1wtyA 119 56.72 a.24.16.2 114880 1mkmA 249 58.37 a.4.5.33,d.110.2.2 79242,79243 1m48A 133 58.54 a.26.1.2 74443 1s50A 259 58.75 c.94.1.1 118864 1u8bA 133 61.42 1z9hA 290 62.03 a.45.1.1,c.47.1.5 124758,124759 2ebyA 113 62.41 2e2eA 177 64.45 1a0p 290 64.59 2j0pA 345 65.58 e.62.1.1 137903 1k0dA 260 65.82 a.45.1.1,c.47.1.5 67930,67931 1px5A 349 65.90 a.160.1.2,d.218.1.6 95277,95278 1vh0A 161 66.83 c.116.1.3 100626 2graA 277 68.74 3ciwA 348 69.02 1bqcA 302 69.31 c.1.8.3 28831 1bw0A 416 70.77 c.67.1.1 34385 1rzsA 61 71.14 a.35.1.2 105139 1pq1A 196 71.36 f.1.4.1 94986 2qvwA 756 71.98 1gwuA 309 73.62 a.93.1.1 83351 1tadA 324 74.57 a.66.1.1,c.37.1.8 18194,32077 2iyvA 184 77.19 c.37.1.2 137812 2blfA 373 78.02 2c3nA 247 81.61 2plc 274 81.85 1r69A 69 84.22 a.35.1.2 17028 2bnmA 198 85.24 a.35.1.3,b.82.1.10 128835,128836 2c2aA 258 85.64 a.30.2.1,d.122.1.3 129662,129663 2cro 71 86.09 1wkyA 464 86.15 b.18.1.31,c.1.8.3 120992,120993 1aj2 282 86.38 1knwA 425 88.17 b.49.2.3,c.1.6.1 90969,90970 1yqgA 263 88.32 1shuX 182 88.97 c.62.1.1 98882 1vflA 356 89.31 c.1.9.1 120041 1aisB 200 89.51 a.74.1.2,a.74.1.2 18384,18385 1vbjA 281 89.74 1adrA 76 89.81 a.35.1.2 17042 2d4zA 250 89.86 d.37.1.1,d.37.1.1 131260,131261 1r69 69 89.97