# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2uxuA 210 2.51e-24 2pbxA 203 2.75e-24 1vi0A 206 3.41e-24 a.4.1.9,a.121.1.1 100720,100721 2ibdA 204 8.28e-24 1t56A 216 9.12e-24 a.4.1.9,a.121.1.1 106428,106429 3ccyA 203 1.24e-23 2hyjA 200 1.52e-23 1rktA 205 1.55e-23 a.4.1.9,a.121.1.1 97623,97624 1qvtA 194 3.23e-23 a.4.1.9,a.121.1.1 104602,104603 1jt6A 188 3.36e-23 a.4.1.9,a.121.1.1 67247,67248 2g7sA 194 3.65e-23 a.4.1.9,a.121.1.1 134737,134738 2qtqA 213 3.80e-23 3bhqA 211 4.62e-23 3bcgA 215 4.75e-23 2f07A 197 5.33e-23 2rasA 212 5.41e-23 1pb6A 212 6.02e-23 a.4.1.9,a.121.1.1 88017,88018 3c2bA 221 8.08e-23 2genA 197 8.54e-23 a.4.1.9,a.121.1.1 135062,135063 3cdlA 203 8.61e-23 1zkgA 212 1.01e-22 a.4.1.9,a.121.1.1 125194,125195 1z77A 200 1.05e-22 a.4.1.9,a.121.1.1 124588,124589 2fq4A 192 1.06e-22 a.4.1.9,a.121.1.1 133937,133938 2raeA 207 1.28e-22 1ui5A 215 1.30e-22 a.4.1.9,a.121.1.1 107856,107857 3bruA 222 1.61e-22 3crjA 199 1.66e-22 3cwrA 208 2.29e-22 2qcoA 210 2.47e-22 2id6A 202 2.68e-22 2nx4A 194 2.68e-22 3cjdA 198 2.79e-22 2iekA 200 3.15e-22 2dg7A 195 3.88e-22 2zb9A 214 4.07e-22 2gfnA 209 4.79e-22 a.4.1.9,a.121.1.1 135101,135102 2qkoA 215 7.57e-22 2hytA 197 8.42e-22 2o7tA 199 9.76e-22 2iaiA 230 1.38e-21 2zcmA 192 2.93e-21 2jj7A 186 3.87e-21 2qibA 231 3.88e-21 1sgmA 191 4.32e-21 a.4.1.9,a.121.1.1 105537,105538 2id3A 225 7.06e-21 a.4.1.9,a.121.1.1 137261,137262 2i10A 202 7.57e-21 a.4.1.9,a.121.1.1 136960,136961 2tct 207 7.98e-21 2d6yA 202 1.07e-20 a.4.1.9,a.121.1.1 131313,131314 1zk8A 183 1.09e-20 a.4.1.9,a.121.1.1 125177,125178 2fbqA 235 1.15e-20 a.4.1.9,a.121.1.1 133256,133257 2o7oA 207 1.51e-20 a.4.1.9,a.121.1.1 138930,138931 3b81A 203 1.57e-20 2g3bA 208 1.81e-20 a.4.1.9,a.121.1.1 134558,134559 2np5A 203 2.97e-20 a.4.1.9,a.121.1.1 138424,138425 2optA 234 3.09e-20 2of7A 260 3.09e-20 3bjbA 207 4.08e-20 3bqyA 209 4.34e-20 3colA 196 5.29e-20 3bniA 229 5.64e-20 2fx0A 201 5.75e-20 a.4.1.9,a.121.1.1 134269,134270 2rekA 199 5.95e-20 2iu5A 195 8.82e-20 2fd5A 180 9.49e-20 a.4.1.9,a.121.1.1 133291,133292 2hkuA 215 1.14e-19 2oerA 214 1.84e-19 2q24A 194 2.16e-19 1a6i 217 3.62e-19 2g7gA 213 4.09e-19 a.4.1.9,a.121.1.1 134732,134733 2vprA 207 4.96e-19 2oi8A 216 5.94e-19 2guhA 214 6.05e-19 2dg8A 193 7.28e-19 1z0xA 220 1.03e-18 a.4.1.9,a.121.1.1 124334,124335 2qwtA 196 1.19e-18 2yveA 185 1.80e-18 1v7bA 185 2.52e-18 a.4.1.9,a.121.1.1 119861,119862 2eh3A 179 2.78e-18 2hxoA 237 5.14e-18 1t33A 224 3.26e-17 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 4.46e-16 a.4.1.9,a.121.1.1 134734,134735 2jn6A 97 0.9367 2qq9A 226 1.755 2ev0A 142 1.756 a.4.5.24,a.76.1.1 132413,132414 2rn7A 108 1.769 1hlvA 131 2.050 a.4.1.7,a.4.1.7 65854,65855 1bl0A 129 2.253 a.4.1.8,a.4.1.8 16053,16054 1zy9A 564 3.048 b.30.5.11,c.1.8.13 125813,125814 2v9vA 135 4.448 3co4A 312 6.316 2pzzA 147 6.969 2dt5A 211 7.037 a.4.5.38,c.2.1.12 131708,131709 2gsqA 202 8.329 a.45.1.1,c.47.1.5 17715,33009 1ijbA 202 10.58 c.62.1.1 71229 2v1xA 591 11.03 1wsuA 124 11.04 a.4.5.35,a.4.5.35 121245,121246 1on2A 142 11.94 a.4.5.24,a.76.1.1 87103,87104 2ftsA 419 14.15 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 2pg4A 95 14.29 1ny1A 240 14.31 c.6.2.3 86395 2ahrA 259 16.70 a.100.1.10,c.2.1.6 126775,126776 1xcbA 211 17.29 a.4.5.38,c.2.1.12 109552,109553 1sfxA 109 20.89 a.4.5.50 105505 1z9hA 290 21.27 a.45.1.1,c.47.1.5 124758,124759 1nhyA 219 22.34 a.45.1.1,c.47.1.5 80520,80521 2fliA 220 22.60 c.1.2.2 133714 1x9fB 145 25.48 a.1.1.2 114984 1atzA 189 28.41 c.62.1.1 34132 1resA 43 29.38 a.4.1.2 16023 2rfpA 171 30.03 1tqjA 230 31.83 c.1.2.2 107228 1zcaA 359 32.09 a.66.1.1,c.37.1.8 124897,124898 1xsvA 113 32.84 a.4.13.3 116003 1tu7A 208 35.23 a.45.1.1,c.47.1.5 112653,112654 2c1iA 431 35.72 c.6.2.3,d.341.1.1 129636,129637 1qv1A 195 36.39 a.39.1.5 96347 1n3yA 198 39.61 c.62.1.1 79976 2qvwA 756 39.87 2pbyA 308 40.32 1js1X 324 40.66 c.78.1.1,c.78.1.1 71834,71835 1m48A 133 42.51 a.26.1.2 74443 1ji6A 589 42.80 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 2dtrA 226 43.53 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2h09A 155 43.96 1s50A 259 46.30 c.94.1.1 118864 2pbqA 178 48.41 2v25A 259 48.74 1wd6A 123 49.27 d.58.4.12 114525 1y9qA 192 49.62 a.35.1.8,b.82.1.15 116592,116593 1n9bA 265 49.93 e.3.1.1 85463 1vhuA 211 50.10 c.50.1.2 100703 1px5A 349 50.18 a.160.1.2,d.218.1.6 95277,95278 1oe8A 211 50.48 a.45.1.1,c.47.1.5 86905,86906 1mkzA 172 50.95 c.57.1.1 84998 1mf7A 194 51.95 c.62.1.1 84937 1jkoC 52 52.34 a.4.1.2 66809 1of1A 376 52.45 c.37.1.1 103924 2f4mB 61 52.49 a.189.1.1 132931 2q4uA 272 53.78 2am1A 454 54.91 2d4zA 250 56.37 d.37.1.1,d.37.1.1 131260,131261 1zljA 78 57.45 1ds1A 324 57.50 b.82.2.2 28127 1v2aA 210 60.48 a.45.1.1,c.47.1.5 100263,100264 1l3lA 234 61.52 a.4.6.2,d.110.5.1 73541,73542 1bw0A 416 61.75 c.67.1.1 34385 2fnaA 357 62.26 a.4.5.11,c.37.1.20 133809,133810 1fseA 74 64.39 a.4.6.2 60000 1shuX 182 64.81 c.62.1.1 98882 1kz7A 353 65.03 a.87.1.1,b.55.1.1 73333,73334 1fx7A 230 66.26 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1je8A 82 67.12 a.4.6.2 77108 2vg3A 284 69.44 2r8wA 332 70.85 2f37A 251 70.96 2rdxA 379 71.08 2iyvA 184 71.89 c.37.1.2 137812 1ouvA 273 73.05 a.118.18.1 93570 2r2dA 276 73.09 2izzA 322 73.26 2dh2A 424 74.01 2nszA 129 74.24 a.118.1.14 138560 2r4vA 247 75.50 2gdrA 202 75.58 2graA 277 75.69 1h97A 147 76.02 a.1.1.2 60812 1p2xA 159 76.21 a.40.1.1 104062 1xo0A 324 76.43 a.60.9.1,d.163.1.1 115674,115675 2blfA 373 77.23 2pvuA 272 77.30 2zfoB 142 77.52 2ictA 94 78.18 3cucA 291 79.84 1jftA 340 81.54 a.35.1.5,c.93.1.1 66652,66653 2owrA 218 81.64 2ia4A 287 85.61 2q3zA 687 86.52 2je8A 848 87.25 3cc1A 433 87.57 2ii2A 310 88.50 2b8wA 328 88.88