# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2uxuA 210 3.00e-24 2pbxA 203 4.05e-24 1vi0A 206 4.57e-24 a.4.1.9,a.121.1.1 100720,100721 2ibdA 204 7.44e-24 1rktA 205 1.35e-23 a.4.1.9,a.121.1.1 97623,97624 3ccyA 203 1.58e-23 2hyjA 200 1.69e-23 1t56A 216 1.72e-23 a.4.1.9,a.121.1.1 106428,106429 1qvtA 194 2.61e-23 a.4.1.9,a.121.1.1 104602,104603 1jt6A 188 2.83e-23 a.4.1.9,a.121.1.1 67247,67248 2g7sA 194 3.25e-23 a.4.1.9,a.121.1.1 134737,134738 2qtqA 213 3.31e-23 2f07A 197 4.35e-23 3bhqA 211 4.97e-23 1pb6A 212 6.13e-23 a.4.1.9,a.121.1.1 88017,88018 3c2bA 221 6.28e-23 3bcgA 215 7.18e-23 3cdlA 203 7.58e-23 2rasA 212 7.63e-23 2genA 197 7.90e-23 a.4.1.9,a.121.1.1 135062,135063 1ui5A 215 9.01e-23 a.4.1.9,a.121.1.1 107856,107857 1zkgA 212 1.01e-22 a.4.1.9,a.121.1.1 125194,125195 1z77A 200 1.06e-22 a.4.1.9,a.121.1.1 124588,124589 3bruA 222 1.27e-22 3crjA 199 1.44e-22 2raeA 207 1.60e-22 2fq4A 192 1.68e-22 a.4.1.9,a.121.1.1 133937,133938 2qcoA 210 2.30e-22 3cwrA 208 2.39e-22 2zb9A 214 2.59e-22 2id6A 202 2.74e-22 2gfnA 209 2.93e-22 a.4.1.9,a.121.1.1 135101,135102 2iekA 200 3.33e-22 2nx4A 194 3.74e-22 3cjdA 198 3.76e-22 2hytA 197 8.41e-22 2iaiA 230 1.21e-21 2qkoA 215 1.63e-21 2dg7A 195 1.67e-21 2o7tA 199 1.98e-21 2zcmA 192 2.33e-21 2jj7A 186 3.19e-21 2id3A 225 4.07e-21 a.4.1.9,a.121.1.1 137261,137262 1sgmA 191 4.43e-21 a.4.1.9,a.121.1.1 105537,105538 2qibA 231 5.83e-21 2i10A 202 6.35e-21 a.4.1.9,a.121.1.1 136960,136961 2d6yA 202 6.57e-21 a.4.1.9,a.121.1.1 131313,131314 3b81A 203 7.36e-21 2tct 207 8.19e-21 2g3bA 208 1.17e-20 a.4.1.9,a.121.1.1 134558,134559 1zk8A 183 1.21e-20 a.4.1.9,a.121.1.1 125177,125178 2o7oA 207 2.08e-20 a.4.1.9,a.121.1.1 138930,138931 2fbqA 235 2.30e-20 a.4.1.9,a.121.1.1 133256,133257 2optA 234 3.07e-20 3bqyA 209 3.12e-20 2fx0A 201 3.16e-20 a.4.1.9,a.121.1.1 134269,134270 2np5A 203 3.24e-20 a.4.1.9,a.121.1.1 138424,138425 2rekA 199 3.97e-20 3bjbA 207 4.05e-20 3bniA 229 4.24e-20 3colA 196 6.19e-20 2hkuA 215 6.52e-20 2of7A 260 6.59e-20 2fd5A 180 1.02e-19 a.4.1.9,a.121.1.1 133291,133292 2q24A 194 1.17e-19 2iu5A 195 1.66e-19 2oerA 214 2.24e-19 2g7gA 213 3.04e-19 a.4.1.9,a.121.1.1 134732,134733 2vprA 207 3.58e-19 2oi8A 216 3.65e-19 1a6i 217 4.22e-19 2dg8A 193 6.33e-19 2qwtA 196 7.22e-19 1z0xA 220 9.00e-19 a.4.1.9,a.121.1.1 124334,124335 2guhA 214 1.09e-18 2eh3A 179 1.98e-18 2yveA 185 2.55e-18 1v7bA 185 4.36e-18 a.4.1.9,a.121.1.1 119861,119862 2hxoA 237 5.56e-18 1t33A 224 1.54e-17 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 4.35e-16 a.4.1.9,a.121.1.1 134734,134735 2jn6A 97 0.3675 1hlvA 131 0.6639 a.4.1.7,a.4.1.7 65854,65855 2ev0A 142 0.7038 a.4.5.24,a.76.1.1 132413,132414 2rn7A 108 0.9043 2dt5A 211 1.565 a.4.5.38,c.2.1.12 131708,131709 2qq9A 226 1.638 1wsuA 124 3.209 a.4.5.35,a.4.5.35 121245,121246 1bl0A 129 3.534 a.4.1.8,a.4.1.8 16053,16054 2v9vA 135 4.467 1xcbA 211 4.514 a.4.5.38,c.2.1.12 109552,109553 2pg4A 95 4.700 2ahrA 259 5.884 a.100.1.10,c.2.1.6 126775,126776 2gsqA 202 5.972 a.45.1.1,c.47.1.5 17715,33009 1on2A 142 7.308 a.4.5.24,a.76.1.1 87103,87104 1sfxA 109 8.703 a.4.5.50 105505 2ftsA 419 9.054 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1xsvA 113 9.284 a.4.13.3 116003 1zcaA 359 15.12 a.66.1.1,c.37.1.8 124897,124898 1zljA 78 15.47 1kz7A 353 16.99 a.87.1.1,b.55.1.1 73333,73334 2j07A 420 17.84 a.99.1.1,c.28.1.1 137891,137892 1l3lA 234 17.85 a.4.6.2,d.110.5.1 73541,73542 1jkoC 52 18.04 a.4.1.2 66809 3co4A 312 18.60 1fseA 74 19.01 a.4.6.2 60000 1je8A 82 19.62 a.4.6.2 77108 1y9qA 192 20.94 a.35.1.8,b.82.1.15 116592,116593 1x9fB 145 21.60 a.1.1.2 114984 2h09A 155 21.75 2graA 277 23.01 1a0pA 290 23.59 a.60.9.1,d.163.1.1 18105,42165 1tu7A 208 24.12 a.45.1.1,c.47.1.5 112653,112654 2nszA 129 24.14 a.118.1.14 138560 1xdyA 298 25.45 d.176.1.1 115186 2ictA 94 26.33 2ondA 308 26.45 1y7yA 74 26.62 a.35.1.3 122729 2blfA 373 26.68 2izzA 322 26.91 2vg3A 284 27.10 1xo0A 324 27.80 a.60.9.1,d.163.1.1 115674,115675 1resA 43 27.86 a.4.1.2 16023 1oe8A 211 28.36 a.45.1.1,c.47.1.5 86905,86906 1zy9A 564 29.36 b.30.5.11,c.1.8.13 125813,125814 1wa5B 530 30.72 a.118.1.1 114432 2fnaA 357 31.17 a.4.5.11,c.37.1.20 133809,133810 2v1xA 591 32.61 2bnmA 198 33.08 a.35.1.3,b.82.1.10 128835,128836 1ijbA 202 33.92 c.62.1.1 71229 1b0nA 111 34.30 a.34.1.1,a.35.1.3 17001,17064 2zfoC 147 34.39 1nhyA 219 35.39 a.45.1.1,c.47.1.5 80520,80521 1a0p 290 35.80 1u8bA 133 37.23 1xqrA 296 38.14 a.118.1.21 122241 1bw0A 416 38.62 c.67.1.1 34385 2rcyA 262 41.70 1z5hA 780 42.59 2rfpA 171 43.02 1yuzA 202 44.78 a.25.1.1,g.41.5.1 124077,124078 1z9hA 290 45.88 a.45.1.1,c.47.1.5 124758,124759 2dh2A 424 46.12 1ny1A 240 46.55 c.6.2.3 86395 2ifuA 307 46.84 1utxA 66 47.44 a.35.1.3 108034 1rzsA 61 48.82 a.35.1.2 105139 1lbkA 208 48.89 a.45.1.1,c.47.1.5 73809,73810 1ouvA 273 48.96 a.118.18.1 93570 1sedA 117 50.24 a.219.1.1 105449 1ji6A 589 50.66 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 2je8A 848 51.10 1yqgA 263 51.30 2a2rA 210 51.34 a.45.1.1,c.47.1.5 126058,126059 2q4uA 272 52.03 2ii2A 310 53.96 2o09A 189 54.80 1m48A 133 55.36 a.26.1.2 74443 2b5aA 77 56.74 a.35.1.3 127882 1fx7A 230 57.22 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1px5A 349 58.26 a.160.1.2,d.218.1.6 95277,95278 2ebyA 113 58.78 1qv1A 195 60.09 a.39.1.5 96347 2nrlA 147 60.29 3b7hA 78 61.41 3cloA 258 62.02 3cucA 291 62.46 1h97A 147 65.20 a.1.1.2 60812 1lmb3 92 65.68 1x9dA 538 66.01 a.102.2.1 121810 1lrvA 244 66.87 a.118.1.5 19146 2f4mB 61 69.99 a.189.1.1 132931 1lrv 244 70.87 2zfoB 142 71.13 2ieeA 271 72.80 1pgtA 210 74.62 a.45.1.1,c.47.1.5 17515,32809 2dtrA 226 75.97 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1g7oA 215 78.08 a.45.1.1,c.47.1.5 60332,60333 1v2aA 210 79.91 a.45.1.1,c.47.1.5 100263,100264 2b8wA 328 80.32 1mkmA 249 80.54 a.4.5.33,d.110.2.2 79242,79243 2rdxA 379 81.21 1p2xA 159 82.30 a.40.1.1 104062 1wd6A 123 83.41 d.58.4.12 114525 2o3fA 111 85.13 2d2mC 147 86.18 1lstA 239 86.26 c.94.1.1 35755 3be4A 217 87.19 2zfoA 140 87.47 2bkwA 385 88.33 c.67.1.3 128714 2ethA 154 88.74 a.4.5.28 132358