# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 1.57e-23 2uxuA 210 2.04e-23 1vi0A 206 3.10e-23 a.4.1.9,a.121.1.1 100720,100721 2ibdA 204 5.55e-23 1t56A 216 7.61e-23 a.4.1.9,a.121.1.1 106428,106429 1rktA 205 8.76e-23 a.4.1.9,a.121.1.1 97623,97624 2hyjA 200 9.27e-23 2qtqA 213 1.02e-22 3ccyA 203 1.37e-22 1qvtA 194 1.37e-22 a.4.1.9,a.121.1.1 104602,104603 1jt6A 188 1.49e-22 a.4.1.9,a.121.1.1 67247,67248 2g7sA 194 1.61e-22 a.4.1.9,a.121.1.1 134737,134738 3bhqA 211 2.29e-22 2f07A 197 2.46e-22 3c2bA 221 4.15e-22 1zkgA 212 4.45e-22 a.4.1.9,a.121.1.1 125194,125195 2genA 197 4.63e-22 a.4.1.9,a.121.1.1 135062,135063 1pb6A 212 4.66e-22 a.4.1.9,a.121.1.1 88017,88018 3bruA 222 4.99e-22 2rasA 212 5.37e-22 1ui5A 215 5.75e-22 a.4.1.9,a.121.1.1 107856,107857 3cdlA 203 6.22e-22 3bcgA 215 6.32e-22 1z77A 200 7.28e-22 a.4.1.9,a.121.1.1 124588,124589 2fq4A 192 7.42e-22 a.4.1.9,a.121.1.1 133937,133938 3crjA 199 7.71e-22 2raeA 207 8.88e-22 2iekA 200 1.20e-21 2id6A 202 1.26e-21 3cwrA 208 1.75e-21 2zb9A 214 1.82e-21 2nx4A 194 1.97e-21 2gfnA 209 2.33e-21 a.4.1.9,a.121.1.1 135101,135102 3cjdA 198 2.67e-21 2qcoA 210 4.24e-21 2dg7A 195 4.30e-21 2o7tA 199 5.25e-21 2hytA 197 5.35e-21 2qkoA 215 7.87e-21 2iaiA 230 9.71e-21 2qibA 231 1.06e-20 2zcmA 192 1.09e-20 2jj7A 186 1.58e-20 2i10A 202 2.42e-20 a.4.1.9,a.121.1.1 136960,136961 1sgmA 191 2.55e-20 a.4.1.9,a.121.1.1 105537,105538 2id3A 225 2.73e-20 a.4.1.9,a.121.1.1 137261,137262 2g3bA 208 3.19e-20 a.4.1.9,a.121.1.1 134558,134559 2tct 207 3.34e-20 3b81A 203 4.07e-20 1zk8A 183 4.11e-20 a.4.1.9,a.121.1.1 125177,125178 2o7oA 207 5.21e-20 a.4.1.9,a.121.1.1 138930,138931 2d6yA 202 5.41e-20 a.4.1.9,a.121.1.1 131313,131314 2fbqA 235 8.24e-20 a.4.1.9,a.121.1.1 133256,133257 2np5A 203 9.66e-20 a.4.1.9,a.121.1.1 138424,138425 2optA 234 1.07e-19 3bniA 229 1.27e-19 2rekA 199 1.60e-19 3bjbA 207 1.64e-19 2fx0A 201 1.98e-19 a.4.1.9,a.121.1.1 134269,134270 3colA 196 2.13e-19 3bqyA 209 2.23e-19 2of7A 260 2.37e-19 2hkuA 215 2.65e-19 2q24A 194 4.12e-19 2fd5A 180 4.14e-19 a.4.1.9,a.121.1.1 133291,133292 2iu5A 195 4.47e-19 2oerA 214 6.40e-19 2g7gA 213 7.85e-19 a.4.1.9,a.121.1.1 134732,134733 1a6i 217 1.15e-18 2oi8A 216 1.16e-18 2dg8A 193 1.58e-18 2vprA 207 1.76e-18 1z0xA 220 2.16e-18 a.4.1.9,a.121.1.1 124334,124335 2qwtA 196 2.82e-18 2guhA 214 3.08e-18 2yveA 185 4.72e-18 2eh3A 179 5.84e-18 1v7bA 185 9.46e-18 a.4.1.9,a.121.1.1 119861,119862 2hxoA 237 2.60e-17 1t33A 224 4.78e-17 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 7.76e-16 a.4.1.9,a.121.1.1 134734,134735 2jn6A 97 0.2457 2ev0A 142 0.5769 a.4.5.24,a.76.1.1 132413,132414 1hlvA 131 0.6375 a.4.1.7,a.4.1.7 65854,65855 2qq9A 226 0.7868 2rn7A 108 0.9560 2dt5A 211 1.199 a.4.5.38,c.2.1.12 131708,131709 1bl0A 129 2.874 a.4.1.8,a.4.1.8 16053,16054 2v9vA 135 3.121 1xcbA 211 3.726 a.4.5.38,c.2.1.12 109552,109553 1wsuA 124 4.042 a.4.5.35,a.4.5.35 121245,121246 2pg4A 95 4.144 1xsvA 113 4.276 a.4.13.3 116003 1sfxA 109 6.331 a.4.5.50 105505 1zy9A 564 6.449 b.30.5.11,c.1.8.13 125813,125814 2ahrA 259 7.727 a.100.1.10,c.2.1.6 126775,126776 1x9fB 145 8.690 a.1.1.2 114984 1on2A 142 9.539 a.4.5.24,a.76.1.1 87103,87104 1resA 43 11.40 a.4.1.2 16023 2v1xA 591 11.65 1zljA 78 14.74 2ondA 308 15.96 2gsqA 202 16.34 a.45.1.1,c.47.1.5 17715,33009 1l3lA 234 16.52 a.4.6.2,d.110.5.1 73541,73542 1y9qA 192 16.57 a.35.1.8,b.82.1.15 116592,116593 2ftsA 419 17.92 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 2zfoC 147 17.97 1fseA 74 18.14 a.4.6.2 60000 1jkoC 52 19.07 a.4.1.2 66809 1je8A 82 19.33 a.4.6.2 77108 1zcaA 359 20.16 a.66.1.1,c.37.1.8 124897,124898 1y7yA 74 20.17 a.35.1.3 122729 1nhyA 219 21.18 a.45.1.1,c.47.1.5 80520,80521 3co4A 312 21.43 2fnaA 357 26.96 a.4.5.11,c.37.1.20 133809,133810 1z5hA 780 27.16 2izzA 322 27.57 1b0nA 111 27.99 a.34.1.1,a.35.1.3 17001,17064 1wa5B 530 28.28 a.118.1.1 114432 2ictA 94 28.60 1rzsA 61 28.65 a.35.1.2 105139 1m48A 133 29.37 a.26.1.2 74443 1a0pA 290 29.95 a.60.9.1,d.163.1.1 18105,42165 2graA 277 30.80 1u8bA 133 31.15 1lrvA 244 31.93 a.118.1.5 19146 2h09A 155 32.75 1ijbA 202 33.03 c.62.1.1 71229 2pvuA 272 33.71 2ebyA 113 34.89 1wd6A 123 37.57 d.58.4.12 114525 2dtrA 226 39.69 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1tu7A 208 40.16 a.45.1.1,c.47.1.5 112653,112654 2bnmA 198 41.42 a.35.1.3,b.82.1.10 128835,128836 2rcyA 262 41.62 1a0p 290 42.46 1kz7A 353 42.70 a.87.1.1,b.55.1.1 73333,73334 1xo0A 324 44.03 a.60.9.1,d.163.1.1 115674,115675 2o8xA 70 46.19 1utxA 66 47.29 a.35.1.3 108034 1oywA 523 50.68 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2nszA 129 51.60 a.118.1.14 138560 2ieeA 271 52.15 3b7hA 78 53.55 2vg3A 284 54.51 1fx7A 230 54.94 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2zfoB 142 55.38 1oe8A 211 55.47 a.45.1.1,c.47.1.5 86905,86906 2zfoA 140 55.51 3cloA 258 55.70 1yqgA 263 57.48 1z9hA 290 57.78 a.45.1.1,c.47.1.5 124758,124759 2f4mB 61 58.18 a.189.1.1 132931 1xqrA 296 58.23 a.118.1.21 122241 1mkmA 249 58.75 a.4.5.33,d.110.2.2 79242,79243 2v25A 259 58.89 1a5tA 334 58.97 a.80.1.1,c.37.1.20 18450,32423 1yhuB 144 59.33 2j07A 420 59.68 a.99.1.1,c.28.1.1 137891,137892 2o1mA 258 61.01 1adrA 76 61.60 a.35.1.2 17042 2b5aA 77 62.17 a.35.1.3 127882 2a5sA 284 62.29 c.94.1.1 126178 1y89A 238 62.46 1gqnA 252 62.62 c.1.10.1 90514 1lrv 244 62.74 2o3fA 111 63.63 2dh2A 424 65.77 2blfA 373 66.63 2de3A 365 67.41 1s69A 124 67.88 a.1.1.1 105305 2ii2A 310 68.07 2ia2A 265 69.54 1h97A 147 70.00 a.1.1.2 60812 2gdrA 202 70.07 1v2aA 210 71.35 a.45.1.1,c.47.1.5 100263,100264 2hiqA 113 72.27 d.58.4.12 136529 2qwwA 154 73.42 3cucA 291 73.51 1px5A 349 74.28 a.160.1.2,d.218.1.6 95277,95278 1neqA 74 75.43 a.35.1.2 17063 2fr1A 486 75.58 c.2.1.2,c.2.1.2 133961,133962 2g7uA 257 75.62 2rfpA 171 84.37 1n9bA 265 85.31 e.3.1.1 85463 1xqsA 280 85.80 a.118.1.21 122243 2ofyA 86 86.56 2nrlA 147 86.59 2dfwA 396 87.97 2zfdA 226 89.54