# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2uxuA 210 8.39e-22 2pbxA 203 1.27e-20 1vi0A 206 1.50e-20 a.4.1.9,a.121.1.1 100720,100721 3bcgA 215 1.52e-20 1t56A 216 1.66e-20 a.4.1.9,a.121.1.1 106428,106429 2hyjA 200 1.97e-20 2qtqA 213 2.96e-20 2g7sA 194 3.23e-20 a.4.1.9,a.121.1.1 134737,134738 2f07A 197 4.14e-20 3bhqA 211 4.23e-20 2ibdA 204 4.55e-20 1rktA 205 4.90e-20 a.4.1.9,a.121.1.1 97623,97624 3cdlA 203 8.15e-20 3ccyA 203 8.67e-20 3crjA 199 8.78e-20 2fq4A 192 1.11e-19 a.4.1.9,a.121.1.1 133937,133938 1ui5A 215 1.23e-19 a.4.1.9,a.121.1.1 107856,107857 2rasA 212 1.27e-19 2genA 197 1.31e-19 a.4.1.9,a.121.1.1 135062,135063 3c2bA 221 1.53e-19 1pb6A 212 1.56e-19 a.4.1.9,a.121.1.1 88017,88018 3bruA 222 1.92e-19 1qvtA 194 2.26e-19 a.4.1.9,a.121.1.1 104602,104603 2gfnA 209 3.02e-19 a.4.1.9,a.121.1.1 135101,135102 2raeA 207 3.43e-19 2nx4A 194 3.49e-19 3cwrA 208 3.73e-19 1zkgA 212 3.79e-19 a.4.1.9,a.121.1.1 125194,125195 1z77A 200 3.83e-19 a.4.1.9,a.121.1.1 124588,124589 2qcoA 210 4.37e-19 1jt6A 188 5.03e-19 a.4.1.9,a.121.1.1 67247,67248 2dg7A 195 7.16e-19 2id6A 202 7.26e-19 2hytA 197 9.55e-19 2id3A 225 1.26e-18 a.4.1.9,a.121.1.1 137261,137262 2jj7A 186 1.57e-18 2zb9A 214 1.57e-18 2iekA 200 1.64e-18 3cjdA 198 1.78e-18 2iaiA 230 2.41e-18 2qibA 231 3.08e-18 1sgmA 191 4.77e-18 a.4.1.9,a.121.1.1 105537,105538 2o7tA 199 7.51e-18 3b81A 203 7.64e-18 2i10A 202 1.13e-17 a.4.1.9,a.121.1.1 136960,136961 2qkoA 215 1.31e-17 2np5A 203 1.51e-17 a.4.1.9,a.121.1.1 138424,138425 2of7A 260 1.52e-17 2fx0A 201 1.67e-17 a.4.1.9,a.121.1.1 134269,134270 2fbqA 235 2.08e-17 a.4.1.9,a.121.1.1 133256,133257 2d6yA 202 2.28e-17 a.4.1.9,a.121.1.1 131313,131314 2g3bA 208 3.89e-17 a.4.1.9,a.121.1.1 134558,134559 3colA 196 4.59e-17 1zk8A 183 4.88e-17 a.4.1.9,a.121.1.1 125177,125178 2fd5A 180 7.78e-17 a.4.1.9,a.121.1.1 133291,133292 2hkuA 215 1.04e-16 2o7oA 207 1.13e-16 a.4.1.9,a.121.1.1 138930,138931 2qwtA 196 1.14e-16 2zcmA 192 1.16e-16 2tct 207 1.31e-16 1a6i 217 1.68e-16 3bjbA 207 1.71e-16 3bniA 229 1.73e-16 2rekA 199 1.75e-16 2vprA 207 1.80e-16 2optA 234 2.01e-16 2q24A 194 2.72e-16 2oerA 214 2.84e-16 3bqyA 209 2.93e-16 2guhA 214 3.54e-16 2iu5A 195 7.29e-16 2oi8A 216 7.64e-16 1z0xA 220 8.59e-16 a.4.1.9,a.121.1.1 124334,124335 1t33A 224 1.80e-15 a.4.1.9,a.121.1.1 106295,106296 2dg8A 193 2.21e-15 2eh3A 179 4.17e-15 2g7gA 213 6.02e-15 a.4.1.9,a.121.1.1 134732,134733 2hxoA 237 7.49e-15 1v7bA 185 9.83e-15 a.4.1.9,a.121.1.1 119861,119862 2yveA 185 2.01e-14 2g7lA 243 3.06e-13 a.4.1.9,a.121.1.1 134734,134735 1ji6A 589 2.141 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1bupA 386 6.334 c.55.1.1,c.55.1.1 33377,33378 1ciyA 590 9.027 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1tu7A 208 9.215 a.45.1.1,c.47.1.5 112653,112654 2imhA 231 10.52 1i5pA 633 12.03 b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 2gsqA 202 12.32 a.45.1.1,c.47.1.5 17715,33009 1i58A 189 18.38 d.122.1.3 61773 2v9vA 135 20.61 1jlvA 209 21.19 a.45.1.1,c.47.1.5 71729,71730 2pbqA 178 21.44 2gsoA 393 21.99 1pgtA 210 23.31 a.45.1.1,c.47.1.5 17515,32809 2ifuA 307 25.59 2jn6A 97 27.49 2qq9A 226 28.67 1z9hA 290 29.18 a.45.1.1,c.47.1.5 124758,124759 2ieeA 271 30.71 1mkzA 172 32.16 c.57.1.1 84998 2hfsA 332 32.36 1lbkA 208 32.94 a.45.1.1,c.47.1.5 73809,73810 1hn0A 1021 35.51 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 2gn4A 344 36.34 1ag9A 175 36.73 c.23.5.1 31178 1dlcA 584 37.04 b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 2napA 723 39.67 b.52.2.2,c.81.1.1 26926,35334 2is8A 164 39.94 2qxlA 658 39.98 2a2rA 210 40.79 a.45.1.1,c.47.1.5 126058,126059 2a2jA 246 43.29 b.45.1.1 126033 1rh9A 373 45.91 c.1.8.3 118773 1v2aA 210 46.75 a.45.1.1,c.47.1.5 100263,100264 1odzA 386 48.34 c.1.8.3 86889 1qnrA 344 48.68 c.1.8.3 28834 2rn7A 108 48.71 2imiA 221 48.98 2aqjA 538 51.00 1j1jA 240 52.22 a.118.16.1 90762 2yzvA 303 52.85 2cw8A 537 55.57 2c3nA 247 57.74 1xcbA 211 59.86 a.4.5.38,c.2.1.12 109552,109553 17gsA 210 60.03 a.45.1.1,c.47.1.5 17524,32818 2e2wA 113 60.27 2nugA 221 64.23 1w9pA 433 64.25 c.1.8.5,d.26.3.1 114412,114413 1m0uA 249 66.77 a.45.1.1,c.47.1.5 78359,78360 1m6yA 301 68.28 a.60.13.1,c.66.1.23 78716,78717 2oxoA 103 69.24 3cbuA 214 69.92 1xi9A 406 72.51 c.67.1.1 115355 1oe8A 211 73.52 a.45.1.1,c.47.1.5 86905,86906 2e7zA 727 73.70 1zcaA 359 74.38 a.66.1.1,c.37.1.8 124897,124898 1uuqA 440 75.02 c.1.8.3 100015 1ci0A 228 76.85 b.45.1.1 25750 1ohuA 175 77.17 f.1.4.1 93029 1giqA 413 78.76 d.166.1.1,d.166.1.1 76224,76225 2v3vA 723 80.00 2d93A 134 80.19 1y5eA 169 82.53 c.57.1.1 122632 2qkmB 266 84.14 2d1zA 436 85.40 1xjdA 345 85.70 d.144.1.7 115388 1rhs 296 85.74 1bl0A 129 87.40 a.4.1.8,a.4.1.8 16053,16054 1vhuA 211 88.10 c.50.1.2 100703