# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1t56A 216 1.10e-13 a.4.1.9,a.121.1.1 106428,106429 2ibdA 204 2.84e-13 2pbxA 203 2.88e-13 1vi0A 206 3.34e-13 a.4.1.9,a.121.1.1 100720,100721 3cdlA 203 3.58e-13 2qtqA 213 3.92e-13 2uxuA 210 4.12e-13 2g7sA 194 7.72e-13 a.4.1.9,a.121.1.1 134737,134738 3bruA 222 1.66e-12 2hyjA 200 2.89e-12 1pb6A 212 3.31e-12 a.4.1.9,a.121.1.1 88017,88018 3crjA 199 3.96e-12 1z77A 200 7.51e-12 a.4.1.9,a.121.1.1 124588,124589 1jt6A 188 8.69e-12 a.4.1.9,a.121.1.1 67247,67248 3bcgA 215 1.20e-11 3ccyA 203 1.20e-11 2f07A 197 1.27e-11 3bhqA 211 1.38e-11 2id3A 225 1.48e-11 a.4.1.9,a.121.1.1 137261,137262 1qvtA 194 1.75e-11 a.4.1.9,a.121.1.1 104602,104603 2jj7A 186 1.81e-11 2id6A 202 3.48e-11 1rktA 205 3.81e-11 a.4.1.9,a.121.1.1 97623,97624 2fq4A 192 4.06e-11 a.4.1.9,a.121.1.1 133937,133938 1zkgA 212 4.99e-11 a.4.1.9,a.121.1.1 125194,125195 2iekA 200 5.08e-11 3c2bA 221 6.16e-11 2iaiA 230 6.70e-11 2genA 197 8.04e-11 a.4.1.9,a.121.1.1 135062,135063 3colA 196 1.11e-10 2zb9A 214 1.28e-10 2nx4A 194 1.33e-10 2fx0A 201 1.80e-10 a.4.1.9,a.121.1.1 134269,134270 3cwrA 208 2.15e-10 2g3bA 208 2.24e-10 a.4.1.9,a.121.1.1 134558,134559 2hytA 197 2.26e-10 2i10A 202 2.59e-10 a.4.1.9,a.121.1.1 136960,136961 2hkuA 215 2.99e-10 3b81A 203 3.45e-10 3cjdA 198 4.62e-10 2qibA 231 4.82e-10 2o7tA 199 5.10e-10 1zk8A 183 5.18e-10 a.4.1.9,a.121.1.1 125177,125178 2oerA 214 5.91e-10 1ui5A 215 6.51e-10 a.4.1.9,a.121.1.1 107856,107857 2rasA 212 9.99e-10 2rekA 199 1.67e-09 2qwtA 196 1.69e-09 2fbqA 235 1.98e-09 a.4.1.9,a.121.1.1 133256,133257 2oi8A 216 2.75e-09 3bjbA 207 3.63e-09 2np5A 203 3.77e-09 a.4.1.9,a.121.1.1 138424,138425 2q24A 194 3.85e-09 2guhA 214 4.10e-09 1sgmA 191 4.43e-09 a.4.1.9,a.121.1.1 105537,105538 2dg7A 195 5.08e-09 3bniA 229 5.25e-09 2zcmA 192 5.73e-09 2qcoA 210 5.88e-09 2eh3A 179 6.23e-09 2gfnA 209 1.10e-08 a.4.1.9,a.121.1.1 135101,135102 3bqyA 209 1.50e-08 2o7oA 207 1.56e-08 a.4.1.9,a.121.1.1 138930,138931 2d6yA 202 2.11e-08 a.4.1.9,a.121.1.1 131313,131314 2of7A 260 2.75e-08 2optA 234 3.19e-08 1t33A 224 3.19e-08 a.4.1.9,a.121.1.1 106295,106296 2fd5A 180 3.26e-08 a.4.1.9,a.121.1.1 133291,133292 2tct 207 3.27e-08 2dg8A 193 3.88e-08 2g7gA 213 4.93e-08 a.4.1.9,a.121.1.1 134732,134733 2yveA 185 6.39e-08 2vprA 207 8.87e-08 1z0xA 220 1.15e-07 a.4.1.9,a.121.1.1 124334,124335 2g7lA 243 1.22e-07 a.4.1.9,a.121.1.1 134734,134735 2iu5A 195 1.40e-07 2raeA 207 1.90e-07 1v7bA 185 2.61e-07 a.4.1.9,a.121.1.1 119861,119862 2qkoA 215 3.10e-07 1a6i 217 3.34e-07 2hxoA 237 1.35e-06 2ifuA 307 2.664 2pbyA 308 5.479 1jyeA 349 5.651 c.93.1.1 67455 2pljA 419 6.168 3ctpA 330 6.402 2fepA 289 6.730 1yzfA 195 6.840 c.23.10.5 124275 2qulA 290 7.166 2d1yA 256 7.463 c.2.1.2 131151 2di3A 239 9.929 1wmaA 276 10.71 c.2.1.2 121042 2bwjA 199 10.83 1ad1A 266 11.20 c.1.21.1 29668 1v4aA 440 11.48 a.24.16.4,d.218.1.9 108350,108351 1ea5A 537 11.73 c.69.1.1 34592 2o20A 332 12.59 2dknA 255 13.99 1vbuA 328 14.41 c.1.8.3 119963 1mkmA 249 15.20 a.4.5.33,d.110.2.2 79242,79243 3cnyA 301 15.74 1r8sE 203 15.88 a.118.3.1 97248 1px5A 349 16.52 a.160.1.2,d.218.1.6 95277,95278 1yb1A 272 17.01 c.2.1.2 116599 2ak3A 226 18.17 c.37.1.1,g.41.2.1 31892,45193 1aisB 200 19.48 a.74.1.2,a.74.1.2 18384,18385 2rjoA 332 19.90 1fmcA 255 20.44 c.2.1.2 29856 2qq5A 260 20.59 1yqyA 523 20.64 d.92.1.14,d.166.1.1 123903,123904 1a3wA 500 20.90 b.58.1.1,c.1.12.1,c.49.1.1 27060,29288,33142 1yixA 265 21.56 c.1.9.12 123371 1n82A 331 21.80 c.1.8.3 91703 2hi4A 495 22.18 2e3zA 465 23.40 2hq1A 247 23.54 2q8xA 331 23.88 2vggA 528 24.88 1zd8A 227 24.96 2qw5A 335 25.62 1tq6A 413 25.97 c.37.1.8 107202 1jftA 340 26.52 a.35.1.5,c.93.1.1 66652,66653 1e0tA 470 27.01 b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1zemA 262 27.77 c.2.1.2 124984 1yvrA 538 28.24 a.118.25.1,c.62.1.5 124116,124117 2vgbA 528 28.72 2iksA 293 29.04 1j5sA 463 29.39 c.1.9.8 71580 1l5oA 356 29.59 c.39.1.1 77711 3b9qA 302 31.87 1b3uA 588 32.00 a.118.1.2 19135 2bgkA 278 32.98 c.2.1.2 128480 2fiqA 420 34.45 c.1.10.7 133527 1ku1A 230 34.81 a.118.3.1 72996 2o23A 265 35.07 c.2.1.2 138884 2gzmA 267 35.53 3brqA 296 35.69 1sh5A 245 35.78 a.40.1.1,a.40.1.1 105543,105544 2vgiA 528 36.03 1w2xA 758 36.37 c.14.1.4,c.14.1.4 109134,109135 1n00A 321 36.76 a.65.1.1 85241 1lvaA 258 37.84 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1gp6A 356 38.03 b.82.2.1 65441 1nh1A 330 38.84 e.45.1.1 91871 2dfwA 396 39.17 1gqnA 252 40.28 c.1.10.1 90514 2g7uA 257 41.26 1nowA 507 42.43 c.1.8.6,d.92.2.1 85936,85937 2cdnA 201 42.96 c.37.1.1 130289 2qghA 425 43.11 1m3uA 264 43.44 c.1.12.8 84784 2q02A 272 43.89 1p2xA 159 44.24 a.40.1.1 104062 1wcgA 464 45.65 c.1.8.4 120888 1zejA 293 46.05 2yxoA 267 46.60 3ciwA 348 47.37 2ioyA 283 48.57 1iy8A 267 48.94 c.2.1.2 83774 1eyeA 280 49.69 c.1.21.1 29672 3c3kA 285 51.18 3b8dA 363 51.35 1tu7A 208 51.44 a.45.1.1,c.47.1.5 112653,112654 1s8nA 205 51.73 c.23.1.1 105374 1ak2A 233 52.03 c.37.1.1,g.41.2.1 31894,45195 1pbgA 468 52.32 c.1.8.4 28946 2pcjA 224 52.52 1r1hA 696 53.29 d.92.1.4 104756 1t7lA 766 54.37 1x1tA 260 54.80 c.2.1.2 121597 2e9lA 469 56.39 1nffA 260 57.02 c.2.1.2 80457 3c2qA 345 58.75 1tv8A 340 61.31 c.1.28.3 107352 2b5aA 77 63.39 a.35.1.3 127882 2ejwA 332 65.56 1td6A 306 65.85 a.234.1.1 112390 1e9rA 437 65.91 c.37.1.11 64827 7odcA 424 66.05 b.49.2.3,c.1.6.1 26488,28650 2vgfA 528 66.14 2efeA 267 66.21 1x1eA 239 66.57 1sh0A 510 68.42 e.8.1.4 98876 2rfpA 171 70.36 3bblA 287 73.01 1a76 326 73.42 1gky 187 73.64 1tv9A 335 73.67 a.60.6.1,a.60.12.1,d.218.1.2 112675,112676,112677 2hs5A 239 74.54 1spxA 278 74.86 c.2.1.2 98958 1qusA 322 75.40 d.2.1.6 36991 1gqiA 708 76.86 c.1.8.10,d.92.2.2 76279,76280 2h7cA 542 77.07 c.69.1.1 136207 2ekpA 239 77.38 2rgyA 290 78.79 1ls1A 295 79.15 a.24.13.1,c.37.1.10 78170,78171 1xg5A 279 79.73 c.2.1.2 115277 1pbvA 195 80.05 a.118.3.1 19179 1rlrA 761 80.08 a.98.1.1,c.7.1.2 18753,30679 2qvcA 313 80.08 2jahA 247 80.16 2ia2A 265 80.18 1j8mF 297 80.40 a.24.13.1,c.37.1.10 62742,62743 1w5tA 412 81.17 a.4.5.11,c.37.1.20 114255,114256 2ondA 308 81.69 1kdoA 227 81.72 c.37.1.1 68478 2cw6A 298 83.53 2ivxA 257 84.35 1ssqA 267 85.47 b.81.1.6 105993 2d2mC 147 85.90 2gdrA 202 86.13 1dqeA 137 86.99 a.39.2.1 17388 2g1kA 176 87.42 c.37.1.2 134519 1hdcA 253 87.51 c.2.1.2 29862 2on5A 206 87.68 1hf8A 289 88.96 a.7.8.2,a.118.9.3 90354,90355