# List of top-scoring protein chains for T0454.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 4.54e-20 a.4.1.9,a.121.1.1 100720,100721 1pb6A 212 1.41e-19 a.4.1.9,a.121.1.1 88017,88018 2ibdA 204 3.80e-18 3cdlA 203 5.65e-18 3bcgA 215 2.08e-17 3bhqA 211 5.90e-17 3bruA 222 6.69e-16 2uxuA 210 7.74e-16 3ccyA 203 1.71e-15 2genA 197 2.10e-15 a.4.1.9,a.121.1.1 135062,135063 2iaiA 230 3.40e-15 2f07A 197 3.70e-15 2fx0A 201 7.11e-15 a.4.1.9,a.121.1.1 134269,134270 1zkgA 212 9.40e-15 a.4.1.9,a.121.1.1 125194,125195 2id6A 202 9.43e-15 2iekA 200 9.55e-15 2hytA 197 1.66e-14 2jj7A 186 5.18e-14 2d6yA 202 1.90e-13 a.4.1.9,a.121.1.1 131313,131314 2g7sA 194 2.08e-13 a.4.1.9,a.121.1.1 134737,134738 2pbxA 203 6.22e-13 1ui5A 215 9.40e-13 a.4.1.9,a.121.1.1 107856,107857 1qvtA 194 1.09e-12 a.4.1.9,a.121.1.1 104602,104603 1rkwA 194 1.10e-12 a.4.1.9,a.121.1.1 104967,104968 1rktA 205 1.19e-12 a.4.1.9,a.121.1.1 97623,97624 2eh3A 179 1.33e-12 1jt6A 188 1.36e-12 a.4.1.9,a.121.1.1 67247,67248 2nx4A 194 1.46e-12 3c07A 273 1.52e-12 2qcoA 210 2.54e-12 2qtqA 213 2.61e-12 2g3bA 208 2.64e-12 a.4.1.9,a.121.1.1 134558,134559 2fbqA 235 2.65e-12 a.4.1.9,a.121.1.1 133256,133257 2gfnA 209 3.40e-12 a.4.1.9,a.121.1.1 135101,135102 2q24A 194 4.54e-12 2zcmA 192 8.68e-12 2zcnA 192 9.99e-12 3crjA 199 1.76e-11 2qwtA 196 1.97e-11 2i10A 202 3.48e-11 a.4.1.9,a.121.1.1 136960,136961 2qibA 231 3.53e-11 1sgmA 191 3.90e-11 a.4.1.9,a.121.1.1 105537,105538 2fq4A 192 3.94e-11 a.4.1.9,a.121.1.1 133937,133938 2pz9A 226 4.64e-11 2hyjA 200 6.08e-11 2of7A 260 1.36e-10 3b81A 203 1.42e-10 2rasA 212 1.47e-10 2raeA 207 1.61e-10 2np3A 212 2.55e-10 a.4.1.9,a.121.1.1 138420,138421 1u9nA 236 2.58e-10 a.4.1.9,a.121.1.1 113246,113247 1t56A 216 2.59e-10 a.4.1.9,a.121.1.1 106428,106429 3colA 196 6.48e-10 2oerA 214 8.09e-10 3c2bA 221 1.02e-09 2zb9A 214 3.33e-09 3cwrA 208 3.36e-09 2rekA 199 4.49e-09 1t33A 224 7.60e-09 a.4.1.9,a.121.1.1 106295,106296 3bjbA 207 7.84e-09 3cjdA 198 9.04e-09 2fd5A 180 9.93e-09 a.4.1.9,a.121.1.1 133291,133292 3bniA 229 1.32e-08 2np5A 203 1.62e-08 a.4.1.9,a.121.1.1 138424,138425 2guhA 214 1.63e-08 2id3A 225 1.96e-08 a.4.1.9,a.121.1.1 137261,137262 2dg8A 193 5.27e-08 2dg7A 195 8.60e-08 3bqyA 209 1.10e-07 2hkuA 215 2.15e-07 2dh0A 183 2.60e-07 1v7bA 185 2.71e-07 a.4.1.9,a.121.1.1 119861,119862 2yveA 185 2.74e-07 2yvhA 177 2.82e-07 2oi8A 216 4.75e-07 2o7oA 207 5.13e-07 a.4.1.9,a.121.1.1 138930,138931 2tctA 207 5.27e-07 a.4.1.9,a.121.1.1 16063,19240 1qpiA 203 5.58e-07 a.4.1.9,a.121.1.1 16072,19249 2trtA 217 5.92e-07 a.4.1.9,a.121.1.1 16064,19241 2ns7A 208 7.27e-07 2hxiA 241 7.67e-07 2qkoA 215 7.80e-07 1z0xA 220 1.02e-06 a.4.1.9,a.121.1.1 124334,124335 2vprA 207 2.10e-06 1a6iA 217 3.05e-06 a.4.1.9,a.121.1.1 16066,19243 1zk8A 183 5.95e-06 a.4.1.9,a.121.1.1 125177,125178 2o7tA 199 7.65e-06 2g7lA 243 3.71e-05 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 4.27e-05 2iu5A 195 0.000128 2optA 234 0.000379 2g7gA 213 0.001183 a.4.1.9,a.121.1.1 134732,134733 2o5hA 136 4.258 2zaiA 497 6.585 2nwuA 155 12.51 1kftA 78 18.93 a.60.2.3 77375 2cv4A 250 21.19 c.47.1.10 130837 2pg4A 95 21.91 2zctA 249 24.77 2nvlA 250 25.36 1s1iX 120 30.57 i.1.1.1 105198 2e0zA 345 50.65 3sc2B 152 51.77 3bj6A 152 51.95 3c7nA 668 54.75 2qxlA 658 54.93 1dxeA 256 56.09 c.1.12.5 29310 1du6A 64 56.83 a.4.1.1 16002 1whsB 153 56.91 1zt2A 330 57.18 d.264.1.1 125624 1ud9A 245 60.99 d.131.1.2,d.131.1.2 107768,107769 1vpeA 398 63.23 c.86.1.1 35453 2d9pA 103 63.27 1fp8A 500 63.44 c.1.8.1 90498 1eswA 500 63.57 c.1.8.1 59500 1bcsB 160 64.10 1pruA 56 64.69 a.35.1.5 17104 2z1gA 155 65.48 1pufB 73 67.28 a.4.1.1 95132 1b72B 87 67.36 a.4.1.1 16001 1t2aA 375 70.18 c.2.1.2 99078 1s7oA 113 72.81 a.4.13.3 105354 2eueA 275 80.69 2fh9A 274 80.77 1lawA 155 84.74 c.55.3.1 33557 3fruA 269 85.34 b.1.1.2,d.19.1.1 20657,38150 1f21A 155 86.38 c.55.3.1 33550 1jl1A 155 86.68 c.55.3.1 66821 1gobA 155 86.94 c.55.3.1 33565 2qsjA 154 87.43 2e85A 159 88.73 2i8lA 156 89.48 1b8iB 63 89.77 a.4.1.1 16011