# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 2.84e-20 3bcgA 215 3.67e-20 3ccyA 203 4.58e-20 1vi0A 206 6.41e-20 a.4.1.9,a.121.1.1 100720,100721 3bhqA 211 6.50e-20 2zb9A 214 8.32e-20 2f07A 197 9.72e-20 2uxuA 210 1.12e-19 2ibdA 204 1.17e-19 1rktA 205 1.21e-19 a.4.1.9,a.121.1.1 97623,97624 2hyjA 200 1.24e-19 2id6A 202 1.41e-19 2qtqA 213 1.56e-19 2g7sA 194 1.68e-19 a.4.1.9,a.121.1.1 134737,134738 2fq4A 192 1.74e-19 a.4.1.9,a.121.1.1 133937,133938 2rasA 212 1.85e-19 2dg7A 195 2.08e-19 3crjA 199 2.17e-19 3cdlA 203 2.23e-19 3b81A 203 2.37e-19 2iekA 200 2.79e-19 3c2bA 221 2.88e-19 2genA 197 3.24e-19 a.4.1.9,a.121.1.1 135062,135063 1qvtA 194 3.36e-19 a.4.1.9,a.121.1.1 104602,104603 3bruA 222 4.27e-19 1pb6A 212 5.86e-19 a.4.1.9,a.121.1.1 88017,88018 1zkgA 212 8.67e-19 a.4.1.9,a.121.1.1 125194,125195 1jt6A 188 9.17e-19 a.4.1.9,a.121.1.1 67247,67248 2hytA 197 9.76e-19 2raeA 207 1.04e-18 3cwrA 208 1.13e-18 1z77A 200 1.57e-18 a.4.1.9,a.121.1.1 124588,124589 2of7A 260 1.93e-18 1t56A 216 2.10e-18 a.4.1.9,a.121.1.1 106428,106429 2jj7A 186 2.11e-18 2id3A 225 2.33e-18 a.4.1.9,a.121.1.1 137261,137262 2iaiA 230 2.59e-18 2zcmA 192 2.71e-18 2qcoA 210 3.03e-18 3colA 196 3.06e-18 1ui5A 215 3.35e-18 a.4.1.9,a.121.1.1 107856,107857 2qibA 231 3.68e-18 2o7tA 199 3.96e-18 2fx0A 201 4.00e-18 a.4.1.9,a.121.1.1 134269,134270 2fbqA 235 4.41e-18 a.4.1.9,a.121.1.1 133256,133257 2iu5A 195 5.61e-18 2gfnA 209 7.46e-18 a.4.1.9,a.121.1.1 135101,135102 2vprA 207 9.42e-18 2nx4A 194 9.72e-18 3cjdA 198 1.31e-17 2i10A 202 1.40e-17 a.4.1.9,a.121.1.1 136960,136961 2q24A 194 1.58e-17 1sgmA 191 1.65e-17 a.4.1.9,a.121.1.1 105537,105538 1zk8A 183 1.71e-17 a.4.1.9,a.121.1.1 125177,125178 2d6yA 202 1.92e-17 a.4.1.9,a.121.1.1 131313,131314 3bniA 229 2.25e-17 2o7oA 207 3.30e-17 a.4.1.9,a.121.1.1 138930,138931 1a6i 217 3.61e-17 2optA 234 5.00e-17 3bqyA 209 5.35e-17 2g3bA 208 7.15e-17 a.4.1.9,a.121.1.1 134558,134559 1t33A 224 7.56e-17 a.4.1.9,a.121.1.1 106295,106296 2dg8A 193 8.74e-17 2oerA 214 1.02e-16 3bjbA 207 1.41e-16 2np5A 203 2.35e-16 a.4.1.9,a.121.1.1 138424,138425 2guhA 214 2.81e-16 2tct 207 2.96e-16 2yveA 185 3.34e-16 2rekA 199 3.43e-16 2qkoA 215 3.51e-16 2g7gA 213 4.03e-16 a.4.1.9,a.121.1.1 134732,134733 2qwtA 196 4.23e-16 2eh3A 179 1.20e-15 1z0xA 220 1.87e-15 a.4.1.9,a.121.1.1 124334,124335 2oi8A 216 2.18e-15 2fd5A 180 3.40e-15 a.4.1.9,a.121.1.1 133291,133292 1v7bA 185 5.79e-15 a.4.1.9,a.121.1.1 119861,119862 2g7lA 243 1.74e-14 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 7.00e-14 2hkuA 215 1.78e-13 1hlvA 131 1.071 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 1.177 2hnlA 225 3.143 1a0p 290 3.197 1jlwA 219 3.227 a.45.1.1,c.47.1.5 71741,71742 2dt5A 211 5.824 a.4.5.38,c.2.1.12 131708,131709 2pg4A 95 6.424 1r9oA 477 6.528 a.104.1.1 104878 2on5A 206 6.870 1on2A 142 9.469 a.4.5.24,a.76.1.1 87103,87104 3c6gA 479 10.33 1xcbA 211 10.61 a.4.5.38,c.2.1.12 109552,109553 2dtr 226 12.73 2rn7A 108 13.70 1m5yA 408 14.85 a.223.1.2,d.26.1.1,d.26.1.1 78664,78665,78666 1cjgA 62 14.85 a.35.1.5 17112 1xo0A 324 16.27 a.60.9.1,d.163.1.1 115674,115675 1wdcC 156 16.87 a.39.1.5 17317 1fseA 74 18.61 a.4.6.2 60000 2rcyA 262 20.00 2bjcA 62 21.09 a.35.1.5 128620 2fnaA 357 21.36 a.4.5.11,c.37.1.20 133809,133810 1ho8A 480 22.67 a.118.1.9 61107 2ekcA 262 23.19 1je8A 82 23.77 a.4.6.2 77108 2ii0A 490 25.25 a.117.1.1 137425 1ngkA 128 25.60 a.1.1.1 85673 1lvaA 258 26.14 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1m48A 133 26.43 a.26.1.2 74443 1zljA 78 26.47 2r8wA 332 27.69 3bbyA 215 29.56 1f2eA 201 31.80 a.45.1.1,c.47.1.5 17745,33039 2v9vA 135 32.80 3bkbA 377 34.87 1n2aA 201 35.60 a.45.1.1,c.47.1.5 91553,91554 2ntoA 201 36.43 1sedA 117 37.25 a.219.1.1 105449 1f21A 155 37.76 c.55.3.1 33550 1p4wA 99 37.98 a.4.6.2 87783 2no4A 240 38.29 2fiqA 420 38.38 c.1.10.7 133527 2a2rA 210 38.69 a.45.1.1,c.47.1.5 126058,126059 1oe8A 211 38.94 a.45.1.1,c.47.1.5 86905,86906 1a0fA 201 39.08 a.45.1.1,c.47.1.5 17737,33031 1xsvA 113 39.44 a.4.13.3 116003 1w07A 659 40.25 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1j09A 468 41.78 a.97.1.1,c.26.1.1 77025,77026 1tu7A 208 42.78 a.45.1.1,c.47.1.5 112653,112654 2hoqA 241 44.43 1hcrA 52 46.20 a.4.1.2 16020 1fw1A 216 46.52 a.45.1.1,c.47.1.5 60051,60052 2ahrA 259 46.86 a.100.1.10,c.2.1.6 126775,126776 3d0cA 314 47.01 1ny1A 240 49.80 c.6.2.3 86395 1x1zA 252 50.26 c.1.2.3 121613 1s7oA 113 50.77 a.4.13.3 105354 2rfpA 171 51.38 2cx5A 158 52.79 1resA 43 52.85 a.4.1.2 16023 1vz0A 230 53.69 a.4.14.1,d.268.1.1 108929,108930 1jlvA 209 54.07 a.45.1.1,c.47.1.5 71729,71730 1wdvA 152 56.69 d.116.1.1 114539 3cbuA 214 58.06 3cblA 377 60.48 2dtrA 226 60.58 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1fnsA 196 61.23 c.62.1.1 34136 1f1eA 154 62.78 a.22.1.2 64927 2o3fA 111 64.89 1anfA 370 65.32 c.94.1.1 35776 2gdrA 202 66.61 2imiA 221 68.47 2o09A 189 68.52 2dnxA 130 69.60 1ltqA 301 69.72 c.108.1.9,c.37.1.1 78208,78209 3inkC 133 69.80 a.26.1.2 16881 1qkmA 255 70.30 a.123.1.1 19309 1qqcA 773 71.26 c.55.3.5,e.8.1.1 33724,43013 2v9dA 343 72.07 2ghaA 382 72.27 2pvqA 201 73.88 1m0uA 249 74.09 a.45.1.1,c.47.1.5 78359,78360 1sfxA 109 74.83 a.4.5.50 105505 1nhyA 219 75.71 a.45.1.1,c.47.1.5 80520,80521 2q0zX 339 76.29 2eb2A 334 80.26 1yn9A 169 81.46 1ciyA 590 82.00 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1lrrA 131 83.71 d.228.1.1 78165 1oqyA 368 84.20 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1zd8A 227 84.23 2q88A 257 84.27 4crxA 322 84.50 a.60.9.1,d.163.1.1 18095,42155 2o8xA 70 84.76 1g8lA 411 85.06 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2pvfA 334 86.82 2f5xA 312 87.11 1f24A 402 89.31 a.104.1.1 18953