# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bcgA 215 6.71e-22 2pbxA 203 9.31e-22 3bhqA 211 1.32e-21 1vi0A 206 1.90e-21 a.4.1.9,a.121.1.1 100720,100721 3ccyA 203 1.93e-21 2zb9A 214 2.30e-21 2uxuA 210 2.46e-21 3cdlA 203 4.02e-21 1rktA 205 4.44e-21 a.4.1.9,a.121.1.1 97623,97624 2hyjA 200 4.64e-21 2f07A 197 4.69e-21 2ibdA 204 4.97e-21 2id6A 202 5.59e-21 2g7sA 194 6.09e-21 a.4.1.9,a.121.1.1 134737,134738 2rasA 212 6.73e-21 3crjA 199 7.15e-21 3c2bA 221 7.92e-21 2qtqA 213 7.95e-21 2iekA 200 8.04e-21 2fq4A 192 8.22e-21 a.4.1.9,a.121.1.1 133937,133938 3b81A 203 8.28e-21 2dg7A 195 8.43e-21 1qvtA 194 1.59e-20 a.4.1.9,a.121.1.1 104602,104603 3bruA 222 1.63e-20 2genA 197 1.70e-20 a.4.1.9,a.121.1.1 135062,135063 1pb6A 212 2.92e-20 a.4.1.9,a.121.1.1 88017,88018 3cjdA 198 2.96e-20 1z77A 200 3.73e-20 a.4.1.9,a.121.1.1 124588,124589 1zkgA 212 3.88e-20 a.4.1.9,a.121.1.1 125194,125195 1jt6A 188 3.95e-20 a.4.1.9,a.121.1.1 67247,67248 3cwrA 208 4.50e-20 2hytA 197 5.06e-20 1t56A 216 6.14e-20 a.4.1.9,a.121.1.1 106428,106429 2raeA 207 6.42e-20 2qcoA 210 7.33e-20 2of7A 260 8.59e-20 2jj7A 186 9.53e-20 2id3A 225 1.06e-19 a.4.1.9,a.121.1.1 137261,137262 3colA 196 1.15e-19 2iaiA 230 1.31e-19 2zcmA 192 1.40e-19 2fbqA 235 1.47e-19 a.4.1.9,a.121.1.1 133256,133257 1ui5A 215 1.79e-19 a.4.1.9,a.121.1.1 107856,107857 2fx0A 201 2.07e-19 a.4.1.9,a.121.1.1 134269,134270 2iu5A 195 2.30e-19 2o7tA 199 2.33e-19 2nx4A 194 2.69e-19 2gfnA 209 2.72e-19 a.4.1.9,a.121.1.1 135101,135102 2qibA 231 2.83e-19 2q24A 194 5.54e-19 2vprA 207 5.76e-19 1sgmA 191 6.78e-19 a.4.1.9,a.121.1.1 105537,105538 1zk8A 183 8.95e-19 a.4.1.9,a.121.1.1 125177,125178 2i10A 202 9.60e-19 a.4.1.9,a.121.1.1 136960,136961 2d6yA 202 1.30e-18 a.4.1.9,a.121.1.1 131313,131314 2o7oA 207 1.72e-18 a.4.1.9,a.121.1.1 138930,138931 1a6i 217 2.39e-18 3bniA 229 2.61e-18 2optA 234 3.54e-18 3bqyA 209 3.60e-18 2dg8A 193 3.97e-18 1t33A 224 4.89e-18 a.4.1.9,a.121.1.1 106295,106296 2oerA 214 5.87e-18 2g3bA 208 6.37e-18 a.4.1.9,a.121.1.1 134558,134559 3bjbA 207 6.99e-18 2qkoA 215 9.84e-18 2yveA 185 1.54e-17 2np5A 203 1.63e-17 a.4.1.9,a.121.1.1 138424,138425 2guhA 214 1.76e-17 2tct 207 2.10e-17 2rekA 199 2.37e-17 2g7gA 213 2.48e-17 a.4.1.9,a.121.1.1 134732,134733 2qwtA 196 2.61e-17 2eh3A 179 9.24e-17 2oi8A 216 1.02e-16 2fd5A 180 1.17e-16 a.4.1.9,a.121.1.1 133291,133292 1z0xA 220 1.58e-16 a.4.1.9,a.121.1.1 124334,124335 1v7bA 185 5.58e-16 a.4.1.9,a.121.1.1 119861,119862 2g7lA 243 1.58e-15 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 6.37e-15 2hkuA 215 1.79e-14 2jn6A 97 1.931 1hlvA 131 2.468 a.4.1.7,a.4.1.7 65854,65855 2hnlA 225 3.350 2on5A 206 3.614 1jlwA 219 6.679 a.45.1.1,c.47.1.5 71741,71742 1m48A 133 7.275 a.26.1.2 74443 1on2A 142 7.466 a.4.5.24,a.76.1.1 87103,87104 1w07A 659 8.792 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 2ekcA 262 9.607 1f21A 155 10.14 c.55.3.1 33550 1r9oA 477 10.24 a.104.1.1 104878 1a0p 290 11.83 2pg4A 95 11.89 2rn7A 108 12.20 1xcbA 211 12.23 a.4.5.38,c.2.1.12 109552,109553 1tu7A 208 12.31 a.45.1.1,c.47.1.5 112653,112654 2dt5A 211 13.39 a.4.5.38,c.2.1.12 131708,131709 1wdcC 156 13.45 a.39.1.5 17317 1ho8A 480 14.12 a.118.1.9 61107 2ntoA 201 15.00 3c6gA 479 15.40 1xo0A 324 16.00 a.60.9.1,d.163.1.1 115674,115675 1m5yA 408 18.42 a.223.1.2,d.26.1.1,d.26.1.1 78664,78665,78666 2fnaA 357 20.03 a.4.5.11,c.37.1.20 133809,133810 1ngkA 128 20.13 a.1.1.1 85673 2a2rA 210 21.12 a.45.1.1,c.47.1.5 126058,126059 1f2eA 201 22.11 a.45.1.1,c.47.1.5 17745,33039 2dtr 226 22.63 1oe8A 211 22.67 a.45.1.1,c.47.1.5 86905,86906 1m0uA 249 24.43 a.45.1.1,c.47.1.5 78359,78360 2gsqA 202 24.82 a.45.1.1,c.47.1.5 17715,33009 2r8wA 332 26.71 1ny1A 240 27.26 c.6.2.3 86395 2ii0A 490 27.44 a.117.1.1 137425 2oezA 247 27.78 3bbyA 215 27.88 1n2aA 201 28.08 a.45.1.1,c.47.1.5 91553,91554 2c4jA 218 28.49 a.45.1.1,c.47.1.5 129816,129817 1sedA 117 29.83 a.219.1.1 105449 2fiqA 420 29.84 c.1.10.7 133527 2no4A 240 31.83 1nhyA 219 31.99 a.45.1.1,c.47.1.5 80520,80521 1qqcA 773 34.12 c.55.3.5,e.8.1.1 33724,43013 1zd8A 227 34.90 2qkbA 154 36.23 2rfpA 171 39.12 2bjcA 62 39.58 a.35.1.5 128620 2dvzA 314 39.72 3cbuA 214 40.40 1fw1A 216 40.91 a.45.1.1,c.47.1.5 60051,60052 1cjgA 62 41.16 a.35.1.5 17112 1fseA 74 41.43 a.4.6.2 60000 1j09A 468 41.86 a.97.1.1,c.26.1.1 77025,77026 1a0fA 201 42.20 a.45.1.1,c.47.1.5 17737,33031 1je8A 82 42.49 a.4.6.2 77108 2pvqA 201 43.80 1zljA 78 46.61 2gdrA 202 47.01 1x1zA 252 47.65 c.1.2.3 121613 2eb2A 334 47.89 2q0zX 339 49.28 1k3yA 221 49.46 a.45.1.1,c.47.1.5 77245,77246 2ahrA 259 49.47 a.100.1.10,c.2.1.6 126775,126776 1f3aA 222 49.70 a.45.1.1,c.47.1.5 17701,32995 3bkbA 377 50.54 2o09A 189 54.38 2v9dA 343 56.02 1lbkA 208 56.05 a.45.1.1,c.47.1.5 73809,73810 4crxA 322 57.17 a.60.9.1,d.163.1.1 18095,42155 1f1eA 154 58.84 a.22.1.2 64927 3d0cA 314 59.32 1ltqA 301 59.96 c.108.1.9,c.37.1.1 78208,78209 2rcyA 262 60.15 1qkmA 255 60.88 a.123.1.1 19309 2qguA 211 61.33 1vbjA 281 61.57 2f5xA 312 61.64 1jl1A 155 63.51 c.55.3.1 66821 2ghaA 382 67.45 1pp7U 131 70.65 a.4.5.44 94973 1p4wA 99 71.60 a.4.6.2 87783 2cx5A 158 73.47 2nxoA 291 73.57 1pgtA 210 74.39 a.45.1.1,c.47.1.5 17515,32809 1gkzA 388 74.82 a.29.5.1,d.122.1.4 65268,65269 2a6lA 292 78.49 c.1.10.1 126285 2a6nA 292 78.90 c.1.10.1 126289 1jlvA 209 79.28 a.45.1.1,c.47.1.5 71729,71730 1bl0A 129 79.29 a.4.1.8,a.4.1.8 16053,16054 2rn2 155 80.16 1resA 43 81.74 a.4.1.2 16023 2nuwA 288 83.35 1oqyA 368 83.40 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 3cblA 377 83.51 1s1iG 119 84.11 i.1.1.1 105181 1xszA 356 84.69 a.118.3.1,d.129.9.1 116005,116006 2f1sA 186 88.14 1g8lA 411 88.25 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1lvaA 258 88.36 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2gykA 86 89.47 1anfA 370 89.67 c.94.1.1 35776