# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 7.99e-22 3bcgA 215 1.42e-21 1vi0A 206 2.72e-21 a.4.1.9,a.121.1.1 100720,100721 2zb9A 214 3.46e-21 3bhqA 211 3.99e-21 2g7sA 194 5.47e-21 a.4.1.9,a.121.1.1 134737,134738 2ibdA 204 5.49e-21 2uxuA 210 5.84e-21 2f07A 197 6.21e-21 2rasA 212 7.52e-21 3cdlA 203 7.53e-21 3ccyA 203 7.72e-21 2genA 197 8.70e-21 a.4.1.9,a.121.1.1 135062,135063 2hyjA 200 8.81e-21 2qtqA 213 9.50e-21 3bruA 222 1.17e-20 1rktA 205 1.20e-20 a.4.1.9,a.121.1.1 97623,97624 3c2bA 221 1.21e-20 2id6A 202 1.47e-20 3b81A 203 1.62e-20 2dg7A 195 1.75e-20 2iekA 200 1.90e-20 3crjA 199 1.97e-20 2fq4A 192 2.11e-20 a.4.1.9,a.121.1.1 133937,133938 1qvtA 194 2.40e-20 a.4.1.9,a.121.1.1 104602,104603 1pb6A 212 4.19e-20 a.4.1.9,a.121.1.1 88017,88018 2raeA 207 5.11e-20 1jt6A 188 6.11e-20 a.4.1.9,a.121.1.1 67247,67248 2jj7A 186 6.67e-20 2id3A 225 6.92e-20 a.4.1.9,a.121.1.1 137261,137262 3cwrA 208 7.01e-20 1zkgA 212 7.48e-20 a.4.1.9,a.121.1.1 125194,125195 3cjdA 198 7.65e-20 2of7A 260 1.05e-19 1z77A 200 1.16e-19 a.4.1.9,a.121.1.1 124588,124589 2hytA 197 1.17e-19 1t56A 216 1.40e-19 a.4.1.9,a.121.1.1 106428,106429 2iaiA 230 1.44e-19 2gfnA 209 1.84e-19 a.4.1.9,a.121.1.1 135101,135102 2qcoA 210 1.91e-19 2zcmA 192 2.00e-19 3colA 196 2.20e-19 1ui5A 215 2.59e-19 a.4.1.9,a.121.1.1 107856,107857 2fx0A 201 3.08e-19 a.4.1.9,a.121.1.1 134269,134270 2nx4A 194 3.16e-19 2fbqA 235 3.64e-19 a.4.1.9,a.121.1.1 133256,133257 2i10A 202 5.97e-19 a.4.1.9,a.121.1.1 136960,136961 2o7tA 199 7.45e-19 2qibA 231 7.60e-19 2d6yA 202 8.34e-19 a.4.1.9,a.121.1.1 131313,131314 2q24A 194 8.34e-19 1sgmA 191 8.88e-19 a.4.1.9,a.121.1.1 105537,105538 2vprA 207 9.48e-19 2iu5A 195 2.17e-18 1zk8A 183 2.24e-18 a.4.1.9,a.121.1.1 125177,125178 2g3bA 208 3.97e-18 a.4.1.9,a.121.1.1 134558,134559 3bniA 229 4.12e-18 2o7oA 207 4.33e-18 a.4.1.9,a.121.1.1 138930,138931 1a6i 217 5.90e-18 3bqyA 209 1.06e-17 2dg8A 193 1.26e-17 2optA 234 1.31e-17 1t33A 224 1.31e-17 a.4.1.9,a.121.1.1 106295,106296 2oerA 214 1.60e-17 3bjbA 207 2.86e-17 2tct 207 3.13e-17 2rekA 199 3.19e-17 2guhA 214 3.78e-17 2qwtA 196 4.36e-17 2np5A 203 4.60e-17 a.4.1.9,a.121.1.1 138424,138425 2g7gA 213 6.08e-17 a.4.1.9,a.121.1.1 134732,134733 2yveA 185 6.57e-17 2qkoA 215 9.63e-17 2fd5A 180 1.83e-16 a.4.1.9,a.121.1.1 133291,133292 1z0xA 220 2.47e-16 a.4.1.9,a.121.1.1 124334,124335 2eh3A 179 3.01e-16 2oi8A 216 5.75e-16 1v7bA 185 1.94e-15 a.4.1.9,a.121.1.1 119861,119862 2g7lA 243 3.28e-15 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 6.95e-15 2hkuA 215 2.08e-14 1hlvA 131 0.6010 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 0.7884 2pg4A 95 2.421 1on2A 142 2.739 a.4.5.24,a.76.1.1 87103,87104 2hnlA 225 2.937 2dt5A 211 3.334 a.4.5.38,c.2.1.12 131708,131709 1xcbA 211 3.660 a.4.5.38,c.2.1.12 109552,109553 1a0p 290 4.238 1fseA 74 6.276 a.4.6.2 60000 2rn7A 108 6.419 1zljA 78 7.061 1je8A 82 7.076 a.4.6.2 77108 1x1zA 252 7.608 c.1.2.3 121613 2bjcA 62 7.772 a.35.1.5 128620 1cjgA 62 7.845 a.35.1.5 17112 1lvaA 258 8.381 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1m48A 133 9.676 a.26.1.2 74443 1p4wA 99 9.867 a.4.6.2 87783 2fnaA 357 11.74 a.4.5.11,c.37.1.20 133809,133810 1w07A 659 12.61 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1zd8A 227 14.06 1j09A 468 15.75 a.97.1.1,c.26.1.1 77025,77026 2on5A 206 15.83 3c6gA 479 16.09 2ahrA 259 16.35 a.100.1.10,c.2.1.6 126775,126776 2o3fA 111 16.66 1r9oA 477 17.46 a.104.1.1 104878 3bbyA 215 17.62 2r8wA 332 19.32 2rcyA 262 19.37 1fnsA 196 19.45 c.62.1.1 34136 2v9vA 135 20.48 2obhA 143 22.06 1s7oA 113 25.42 a.4.13.3 105354 1vz0A 230 25.66 a.4.14.1,d.268.1.1 108929,108930 1sfxA 109 27.55 a.4.5.50 105505 2q0zX 339 27.59 1f21A 155 29.56 c.55.3.1 33550 1f2eA 201 29.88 a.45.1.1,c.47.1.5 17745,33039 2biiA 424 31.75 1xsvA 113 32.31 a.4.13.3 116003 2hoqA 241 32.51 1wdvA 152 33.11 d.116.1.1 114539 2fiqA 420 33.96 c.1.10.7 133527 1anfA 370 34.23 c.94.1.1 35776 2cx5A 158 35.56 1ku1A 230 37.81 a.118.3.1 72996 1qqcA 773 40.98 c.55.3.5,e.8.1.1 33724,43013 1rec 201 41.43 2jamA 304 42.01 2ghaA 382 42.18 1m0uA 249 42.71 a.45.1.1,c.47.1.5 78359,78360 3inkC 133 42.80 a.26.1.2 16881 2bnmA 198 46.14 a.35.1.3,b.82.1.10 128835,128836 1wpkA 146 46.52 1ltqA 301 46.84 c.108.1.9,c.37.1.1 78208,78209 2no4A 240 47.24 1sedA 117 47.25 a.219.1.1 105449 2gv5A 161 47.78 1wsuA 124 48.47 a.4.5.35,a.4.5.35 121245,121246 1y1xA 191 48.73 a.39.1.8 116374 1f4qA 165 49.18 a.39.1.8 17360 2rfpA 171 49.26 1wdcC 156 49.47 a.39.1.5 17317 3cloA 258 49.69 2a2rA 210 50.05 a.45.1.1,c.47.1.5 126058,126059 2o09A 189 52.77 1ijbA 202 53.71 c.62.1.1 71229 1l3lA 234 54.13 a.4.6.2,d.110.5.1 73541,73542 2o8xA 70 54.23 1xo0A 324 55.20 a.60.9.1,d.163.1.1 115674,115675 1jftA 340 55.21 a.35.1.5,c.93.1.1 66652,66653 1neqA 74 55.66 a.35.1.2 17063 1r69 69 56.28 1utxA 66 56.45 a.35.1.3 108034 1a0fA 201 59.40 a.45.1.1,c.47.1.5 17737,33031 3c57A 95 60.20 2v9dA 343 60.53 1oqyA 368 60.69 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1rzsA 61 63.13 a.35.1.2 105139 1zcbA 362 63.21 a.66.1.1,c.37.1.8 124901,124902 2o5gA 148 64.78 1auiB 169 64.92 a.39.1.5 17325 1f1eA 154 67.47 a.22.1.2 64927 1nxcA 478 68.64 a.102.2.1 92293 1n2aA 201 69.23 a.45.1.1,c.47.1.5 91553,91554 2dnxA 130 69.28 1oe8A 211 70.50 a.45.1.1,c.47.1.5 86905,86906 1vbjA 281 70.61 1k94A 165 71.15 a.39.1.8 68333 1fw1A 216 71.95 a.45.1.1,c.47.1.5 60051,60052 2dtr 226 73.23 1m5yA 408 74.62 a.223.1.2,d.26.1.1,d.26.1.1 78664,78665,78666 1resA 43 74.90 a.4.1.2 16023 1r8mE 203 75.04 a.118.3.1 97242 1adrA 76 75.54 a.35.1.2 17042 1rp3A 239 79.04 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 2bbrA 195 81.29 1fx7A 230 81.81 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1r1tA 122 82.13 a.4.5.5 104769 3cbuA 214 83.70 2ab5A 269 85.11 2fncA 381 85.31 1r69A 69 86.06 a.35.1.2 17028 1smtA 122 86.34 a.4.5.5 16109 2scpA 174 87.05 a.39.1.5 17256 1u2wA 122 87.33 a.4.5.5 119487 2croA 71 89.71 a.35.1.2 17038