# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bhqA 211 1.75e-21 3ccyA 203 3.82e-21 1vi0A 206 4.51e-21 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 4.87e-21 2id6A 202 9.68e-21 2zb9A 214 1.33e-20 2ibdA 204 1.35e-20 3cdlA 203 1.38e-20 1rktA 205 1.57e-20 a.4.1.9,a.121.1.1 97623,97624 2f07A 197 1.83e-20 3c2bA 221 1.85e-20 2hyjA 200 1.90e-20 3bcgA 215 2.18e-20 1qvtA 194 2.59e-20 a.4.1.9,a.121.1.1 104602,104603 2g7sA 194 2.95e-20 a.4.1.9,a.121.1.1 134737,134738 2iekA 200 3.30e-20 2dg7A 195 3.50e-20 2fq4A 192 3.89e-20 a.4.1.9,a.121.1.1 133937,133938 1zkgA 212 4.05e-20 a.4.1.9,a.121.1.1 125194,125195 3b81A 203 4.22e-20 2rasA 212 4.39e-20 2qtqA 213 4.44e-20 3crjA 199 4.72e-20 2qcoA 210 5.48e-20 2uxuA 210 5.61e-20 1jt6A 188 7.20e-20 a.4.1.9,a.121.1.1 67247,67248 2genA 197 1.02e-19 a.4.1.9,a.121.1.1 135062,135063 1z77A 200 1.46e-19 a.4.1.9,a.121.1.1 124588,124589 2raeA 207 1.48e-19 2hytA 197 1.90e-19 3bruA 222 1.98e-19 3cwrA 208 2.14e-19 2of7A 260 2.30e-19 1pb6A 212 2.83e-19 a.4.1.9,a.121.1.1 88017,88018 2id3A 225 3.78e-19 a.4.1.9,a.121.1.1 137261,137262 1t56A 216 4.22e-19 a.4.1.9,a.121.1.1 106428,106429 2jj7A 186 4.64e-19 3colA 196 4.90e-19 1ui5A 215 5.05e-19 a.4.1.9,a.121.1.1 107856,107857 2o7tA 199 6.36e-19 2zcmA 192 7.35e-19 2qibA 231 7.35e-19 2iu5A 195 7.47e-19 2iaiA 230 7.75e-19 2fx0A 201 9.24e-19 a.4.1.9,a.121.1.1 134269,134270 2nx4A 194 1.27e-18 2gfnA 209 1.32e-18 a.4.1.9,a.121.1.1 135101,135102 2fbqA 235 1.72e-18 a.4.1.9,a.121.1.1 133256,133257 3cjdA 198 1.95e-18 2vprA 207 2.16e-18 1sgmA 191 3.08e-18 a.4.1.9,a.121.1.1 105537,105538 1zk8A 183 3.36e-18 a.4.1.9,a.121.1.1 125177,125178 3bniA 229 3.98e-18 2q24A 194 4.31e-18 2i10A 202 6.27e-18 a.4.1.9,a.121.1.1 136960,136961 2d6yA 202 6.68e-18 a.4.1.9,a.121.1.1 131313,131314 2g3bA 208 8.39e-18 a.4.1.9,a.121.1.1 134558,134559 2o7oA 207 9.80e-18 a.4.1.9,a.121.1.1 138930,138931 2optA 234 1.47e-17 1t33A 224 1.70e-17 a.4.1.9,a.121.1.1 106295,106296 1a6i 217 1.82e-17 2qkoA 215 2.85e-17 2oerA 214 2.88e-17 2dg8A 193 3.49e-17 3bqyA 209 4.23e-17 2tct 207 5.09e-17 2np5A 203 5.33e-17 a.4.1.9,a.121.1.1 138424,138425 3bjbA 207 5.89e-17 2yveA 185 7.43e-17 2rekA 199 8.92e-17 2g7gA 213 1.11e-16 a.4.1.9,a.121.1.1 134732,134733 2guhA 214 1.14e-16 2qwtA 196 1.83e-16 2fd5A 180 1.91e-16 a.4.1.9,a.121.1.1 133291,133292 2oi8A 216 2.12e-16 2eh3A 179 4.75e-16 1z0xA 220 6.67e-16 a.4.1.9,a.121.1.1 124334,124335 1v7bA 185 3.62e-15 a.4.1.9,a.121.1.1 119861,119862 2hxoA 237 5.96e-15 2g7lA 243 6.84e-15 a.4.1.9,a.121.1.1 134734,134735 2hkuA 215 3.27e-14 2jn6A 97 2.619 1jlwA 219 3.884 a.45.1.1,c.47.1.5 71741,71742 2hnlA 225 5.449 2on5A 206 5.748 1wdcC 156 5.816 a.39.1.5 17317 1hlvA 131 7.417 a.4.1.7,a.4.1.7 65854,65855 1a0p 290 8.439 1ho8A 480 9.091 a.118.1.9 61107 2pg4A 95 9.613 1r9oA 477 10.63 a.104.1.1 104878 3b6hA 498 10.66 1on2A 142 11.41 a.4.5.24,a.76.1.1 87103,87104 1m48A 133 12.71 a.26.1.2 74443 1f21A 155 13.65 c.55.3.1 33550 1ngkA 128 14.07 a.1.1.1 85673 1cjgA 62 16.76 a.35.1.5 17112 2v9vA 135 17.37 1oe8A 211 17.96 a.45.1.1,c.47.1.5 86905,86906 2bjcA 62 19.63 a.35.1.5 128620 2dt5A 211 21.49 a.4.5.38,c.2.1.12 131708,131709 1nhyA 219 22.53 a.45.1.1,c.47.1.5 80520,80521 1fseA 74 23.94 a.4.6.2 60000 2ahrA 259 24.38 a.100.1.10,c.2.1.6 126775,126776 2ii0A 490 25.37 a.117.1.1 137425 2q88A 257 27.02 1xo0A 324 28.83 a.60.9.1,d.163.1.1 115674,115675 2ekcA 262 29.59 2gsqA 202 30.96 a.45.1.1,c.47.1.5 17715,33009 3c6gA 479 31.12 2rcyA 262 31.85 3chhA 336 32.02 2fnaA 357 32.14 a.4.5.11,c.37.1.20 133809,133810 1xcbA 211 32.26 a.4.5.38,c.2.1.12 109552,109553 1j09A 468 34.56 a.97.1.1,c.26.1.1 77025,77026 2dvzA 314 34.60 1f1eA 154 36.45 a.22.1.2 64927 1jl1A 155 37.02 c.55.3.1 66821 2a2rA 210 37.11 a.45.1.1,c.47.1.5 126058,126059 2q0zX 339 38.78 1xszA 356 40.71 a.118.3.1,d.129.9.1 116005,116006 3d0cA 314 41.76 3bkbA 377 42.49 2dtr 226 42.55 1anfA 370 43.16 c.94.1.1 35776 1zljA 78 43.21 3inkC 133 43.36 a.26.1.2 16881 2c1mA 424 43.66 1f24A 402 44.63 a.104.1.1 18953 1ltqA 301 47.64 c.108.1.9,c.37.1.1 78208,78209 1f2eA 201 48.62 a.45.1.1,c.47.1.5 17745,33039 1je8A 82 48.67 a.4.6.2 77108 1zcbA 362 50.60 a.66.1.1,c.37.1.8 124901,124902 2ntoA 201 50.90 1lshA 1056 51.13 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1sedA 117 51.42 a.219.1.1 105449 1g8lA 411 51.60 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2rn7A 108 52.59 3bbyA 215 52.61 2f5xA 312 54.20 3cblA 377 54.99 1lvaA 258 55.03 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1ny1A 240 55.32 c.6.2.3 86395 1gvfA 286 55.91 c.1.10.2 70599 2no4A 240 57.96 1x1zA 252 58.30 c.1.2.3 121613 2qkbA 154 58.40 2o8xA 70 59.41 1a0fA 201 59.53 a.45.1.1,c.47.1.5 17737,33031 2o3fA 111 61.84 1x8bA 289 61.94 1n2aA 201 62.31 a.45.1.1,c.47.1.5 91553,91554 1k3yA 221 62.75 a.45.1.1,c.47.1.5 77245,77246 2pvqA 201 63.06 1v2aA 210 65.39 a.45.1.1,c.47.1.5 100263,100264 2hi4A 495 65.88 1jpzA 473 66.39 a.104.1.1 67069 1w07A 659 70.64 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1p4wA 99 70.69 a.4.6.2 87783 1pp7U 131 71.58 a.4.5.44 94973 2f9iB 285 71.58 2ghaA 382 72.00 2jamA 304 74.08 2pzzA 147 75.05 2pvfA 334 77.50 1zd8A 227 77.86 1kxuA 333 78.20 a.74.1.1,a.74.1.1 18358,18359 1qqcA 773 78.22 c.55.3.5,e.8.1.1 33724,43013 2qhnA 323 78.88 2o09A 189 79.32 1wdvA 152 79.45 d.116.1.1 114539 1elrA 131 79.87 a.118.8.1 19209 1u13A 455 80.55 a.104.1.1 107578 2vlqA 86 81.00 2hiqA 113 81.70 d.58.4.12 136529 1fw1A 216 81.83 a.45.1.1,c.47.1.5 60051,60052 2dnxA 130 82.01 1yn9A 169 82.75 2gykA 86 83.13 2reiA 318 84.37 1oh0A 131 84.74 d.17.4.3 87004 3bofA 566 85.26 1k94A 165 86.55 a.39.1.8 68333 1s7oA 113 87.06 a.4.13.3 105354 2gv5A 161 89.05 1tu7A 208 89.75 a.45.1.1,c.47.1.5 112653,112654 1jlvA 209 89.89 a.45.1.1,c.47.1.5 71729,71730