# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bhqA 211 1.96e-21 3ccyA 203 3.96e-21 2pbxA 203 4.27e-21 1vi0A 206 4.30e-21 a.4.1.9,a.121.1.1 100720,100721 2zb9A 214 1.01e-20 2id6A 202 1.02e-20 3cdlA 203 1.26e-20 2hyjA 200 1.33e-20 2f07A 197 1.56e-20 3c2bA 221 1.60e-20 1rktA 205 1.66e-20 a.4.1.9,a.121.1.1 97623,97624 2ibdA 204 1.88e-20 3bcgA 215 2.44e-20 2g7sA 194 2.50e-20 a.4.1.9,a.121.1.1 134737,134738 1qvtA 194 2.80e-20 a.4.1.9,a.121.1.1 104602,104603 2iekA 200 3.01e-20 2rasA 212 3.05e-20 2dg7A 195 3.69e-20 1zkgA 212 3.73e-20 a.4.1.9,a.121.1.1 125194,125195 3crjA 199 3.80e-20 2fq4A 192 4.01e-20 a.4.1.9,a.121.1.1 133937,133938 3b81A 203 4.03e-20 2qtqA 213 4.68e-20 2uxuA 210 5.86e-20 2qcoA 210 5.98e-20 1jt6A 188 8.02e-20 a.4.1.9,a.121.1.1 67247,67248 2genA 197 1.08e-19 a.4.1.9,a.121.1.1 135062,135063 1z77A 200 1.38e-19 a.4.1.9,a.121.1.1 124588,124589 2hytA 197 1.44e-19 2raeA 207 1.49e-19 3bruA 222 1.72e-19 3cwrA 208 1.80e-19 2id3A 225 2.31e-19 a.4.1.9,a.121.1.1 137261,137262 2of7A 260 2.55e-19 1pb6A 212 3.08e-19 a.4.1.9,a.121.1.1 88017,88018 3colA 196 3.46e-19 2jj7A 186 4.66e-19 1t56A 216 4.70e-19 a.4.1.9,a.121.1.1 106428,106429 1ui5A 215 5.12e-19 a.4.1.9,a.121.1.1 107856,107857 2iaiA 230 6.12e-19 2qibA 231 7.09e-19 2iu5A 195 7.32e-19 2o7tA 199 8.27e-19 2fx0A 201 8.54e-19 a.4.1.9,a.121.1.1 134269,134270 2zcmA 192 9.45e-19 2nx4A 194 1.20e-18 2gfnA 209 1.37e-18 a.4.1.9,a.121.1.1 135101,135102 2fbqA 235 1.79e-18 a.4.1.9,a.121.1.1 133256,133257 2vprA 207 1.91e-18 3cjdA 198 2.08e-18 1sgmA 191 3.16e-18 a.4.1.9,a.121.1.1 105537,105538 3bniA 229 3.23e-18 2q24A 194 4.39e-18 2i10A 202 4.78e-18 a.4.1.9,a.121.1.1 136960,136961 1zk8A 183 5.04e-18 a.4.1.9,a.121.1.1 125177,125178 2o7oA 207 7.45e-18 a.4.1.9,a.121.1.1 138930,138931 2g3bA 208 7.70e-18 a.4.1.9,a.121.1.1 134558,134559 2d6yA 202 9.49e-18 a.4.1.9,a.121.1.1 131313,131314 2optA 234 1.09e-17 1a6i 217 1.69e-17 2qkoA 215 2.13e-17 1t33A 224 2.70e-17 a.4.1.9,a.121.1.1 106295,106296 2oerA 214 3.15e-17 2dg8A 193 3.17e-17 2tct 207 3.76e-17 3bqyA 209 4.00e-17 2np5A 203 4.67e-17 a.4.1.9,a.121.1.1 138424,138425 3bjbA 207 6.46e-17 2rekA 199 7.19e-17 2g7gA 213 7.22e-17 a.4.1.9,a.121.1.1 134732,134733 2yveA 185 1.03e-16 2guhA 214 1.09e-16 2fd5A 180 1.28e-16 a.4.1.9,a.121.1.1 133291,133292 2oi8A 216 2.00e-16 2qwtA 196 2.94e-16 2eh3A 179 4.43e-16 1z0xA 220 5.55e-16 a.4.1.9,a.121.1.1 124334,124335 1v7bA 185 3.56e-15 a.4.1.9,a.121.1.1 119861,119862 2g7lA 243 5.47e-15 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 6.13e-15 2hkuA 215 3.23e-14 2jn6A 97 2.230 1jlwA 219 3.257 a.45.1.1,c.47.1.5 71741,71742 2hnlA 225 3.941 1hlvA 131 4.341 a.4.1.7,a.4.1.7 65854,65855 2pg4A 95 7.890 1r9oA 477 8.268 a.104.1.1 104878 1a0p 290 8.916 1wdcC 156 9.332 a.39.1.5 17317 1cjgA 62 13.08 a.35.1.5 17112 1ngkA 128 13.29 a.1.1.1 85673 1nhyA 219 13.78 a.45.1.1,c.47.1.5 80520,80521 1f21A 155 13.80 c.55.3.1 33550 1ho8A 480 13.85 a.118.1.9 61107 1oe8A 211 14.52 a.45.1.1,c.47.1.5 86905,86906 2dt5A 211 15.97 a.4.5.38,c.2.1.12 131708,131709 3b6hA 498 17.16 1m48A 133 17.24 a.26.1.2 74443 2on5A 206 17.34 1fseA 74 17.73 a.4.6.2 60000 2bjcA 62 17.81 a.35.1.5 128620 1xo0A 324 20.31 a.60.9.1,d.163.1.1 115674,115675 2v9vA 135 20.32 2gsqA 202 20.70 a.45.1.1,c.47.1.5 17715,33009 2ekcA 262 22.25 2ii0A 490 23.37 a.117.1.1 137425 2q88A 257 24.01 1on2A 142 24.58 a.4.5.24,a.76.1.1 87103,87104 2ahrA 259 27.24 a.100.1.10,c.2.1.6 126775,126776 1f2eA 201 28.31 a.45.1.1,c.47.1.5 17745,33039 2dvzA 314 30.31 1je8A 82 31.49 a.4.6.2 77108 2a2rA 210 32.82 a.45.1.1,c.47.1.5 126058,126059 2rn7A 108 34.09 1zljA 78 34.22 3bkbA 377 34.29 2rcyA 262 34.37 1zcbA 362 34.42 a.66.1.1,c.37.1.8 124901,124902 1xcbA 211 35.53 a.4.5.38,c.2.1.12 109552,109553 3cblA 377 38.04 1ltqA 301 40.00 c.108.1.9,c.37.1.1 78208,78209 1jl1A 155 40.23 c.55.3.1 66821 1g8lA 411 40.45 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1n2aA 201 41.18 a.45.1.1,c.47.1.5 91553,91554 2pvfA 334 41.96 1a0fA 201 43.40 a.45.1.1,c.47.1.5 17737,33031 1yn9A 169 43.89 2ntoA 201 44.70 1anfA 370 46.56 c.94.1.1 35776 1gvfA 286 46.63 c.1.10.2 70599 1xszA 356 46.79 a.118.3.1,d.129.9.1 116005,116006 3bofA 566 47.96 1p4wA 99 48.67 a.4.6.2 87783 3d0cA 314 50.81 2fnaA 357 50.85 a.4.5.11,c.37.1.20 133809,133810 3chhA 336 51.78 2dtr 226 53.86 2rfpA 171 54.25 2qkbA 154 54.40 1lvaA 258 54.80 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2cvdA 198 55.81 a.45.1.1,c.47.1.5 130861,130862 2o3fA 111 56.23 1j09A 468 56.57 a.97.1.1,c.26.1.1 77025,77026 3c6gA 479 56.74 1f1eA 154 56.76 a.22.1.2 64927 1qqcA 773 56.97 c.55.3.5,e.8.1.1 33724,43013 1sedA 117 57.15 a.219.1.1 105449 1f24A 402 57.71 a.104.1.1 18953 1fw1A 216 58.02 a.45.1.1,c.47.1.5 60051,60052 2reiA 318 58.93 2f5xA 312 59.70 1x1zA 252 61.12 c.1.2.3 121613 2c1mA 424 61.43 3inkC 133 62.42 a.26.1.2 16881 2o09A 189 62.50 1ny1A 240 62.60 c.6.2.3 86395 1k3yA 221 63.04 a.45.1.1,c.47.1.5 77245,77246 1s7oA 113 63.57 a.4.13.3 105354 1jpzA 473 63.78 a.104.1.1 67069 2pvqA 201 64.55 1w07A 659 65.51 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1jlvA 209 65.91 a.45.1.1,c.47.1.5 71729,71730 2q0zX 339 65.97 1zd8A 227 66.57 1fnsA 196 67.89 c.62.1.1 34136 2o8xA 70 68.12 3bbyA 215 71.88 1u61A 138 71.96 a.149.1.1 107696 1x8bA 289 72.66 1elrA 131 73.01 a.118.8.1 19209 1f5nA 592 73.44 a.114.1.1,c.37.1.8 19077,32152 2jamA 304 76.80 2dnxA 130 77.88 1s69A 124 78.10 a.1.1.1 105305 2no4A 240 78.63 1u13A 455 78.69 a.104.1.1 107578 1wdvA 152 78.83 d.116.1.1 114539 1uehA 253 79.89 c.101.1.1 99259 1lrrA 131 81.18 d.228.1.1 78165 1bu7A 455 81.51 a.104.1.1 18937 1tu7A 208 82.19 a.45.1.1,c.47.1.5 112653,112654 1vbjA 281 82.74 2hi4A 495 82.80 1ug3A 339 83.10 a.118.1.14,a.118.1.14 119671,119672 1pp7U 131 84.76 a.4.5.44 94973 1lshA 1056 86.10 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 2ghaA 382 87.11 1m0uA 249 87.17 a.45.1.1,c.47.1.5 78359,78360 2eb2A 334 87.56 1qhtA 775 88.84 c.55.3.5,e.8.1.1 33722,43011 2cz2A 223 89.43 1aj8A 371 89.51 a.103.1.1 18900