# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bhqA 211 2.51e-21 2pbxA 203 4.10e-21 3ccyA 203 5.00e-21 1vi0A 206 5.56e-21 a.4.1.9,a.121.1.1 100720,100721 2id6A 202 1.10e-20 2zb9A 214 1.11e-20 1rktA 205 1.44e-20 a.4.1.9,a.121.1.1 97623,97624 3cdlA 203 1.54e-20 2f07A 197 1.93e-20 2hyjA 200 2.01e-20 1qvtA 194 2.12e-20 a.4.1.9,a.121.1.1 104602,104603 3bcgA 215 2.14e-20 2ibdA 204 2.34e-20 3c2bA 221 2.60e-20 2dg7A 195 2.69e-20 2g7sA 194 3.22e-20 a.4.1.9,a.121.1.1 134737,134738 2iekA 200 3.40e-20 1zkgA 212 3.79e-20 a.4.1.9,a.121.1.1 125194,125195 3crjA 199 4.20e-20 2fq4A 192 4.58e-20 a.4.1.9,a.121.1.1 133937,133938 2qtqA 213 4.78e-20 3b81A 203 5.00e-20 2qcoA 210 5.52e-20 2uxuA 210 5.66e-20 2rasA 212 6.70e-20 1jt6A 188 7.00e-20 a.4.1.9,a.121.1.1 67247,67248 2genA 197 1.20e-19 a.4.1.9,a.121.1.1 135062,135063 2hytA 197 1.30e-19 1z77A 200 1.67e-19 a.4.1.9,a.121.1.1 124588,124589 2raeA 207 1.85e-19 3bruA 222 1.99e-19 2of7A 260 2.80e-19 1pb6A 212 2.98e-19 a.4.1.9,a.121.1.1 88017,88018 3cwrA 208 3.30e-19 2id3A 225 4.44e-19 a.4.1.9,a.121.1.1 137261,137262 2jj7A 186 5.42e-19 1t56A 216 5.96e-19 a.4.1.9,a.121.1.1 106428,106429 2qibA 231 6.56e-19 2zcmA 192 6.62e-19 3colA 196 6.97e-19 2iu5A 195 8.27e-19 1ui5A 215 8.33e-19 a.4.1.9,a.121.1.1 107856,107857 2iaiA 230 8.74e-19 2o7tA 199 1.00e-18 2fx0A 201 1.06e-18 a.4.1.9,a.121.1.1 134269,134270 2gfnA 209 1.26e-18 a.4.1.9,a.121.1.1 135101,135102 2nx4A 194 1.58e-18 2fbqA 235 1.94e-18 a.4.1.9,a.121.1.1 133256,133257 2vprA 207 2.03e-18 3cjdA 198 2.22e-18 1sgmA 191 3.27e-18 a.4.1.9,a.121.1.1 105537,105538 3bniA 229 3.69e-18 1zk8A 183 4.68e-18 a.4.1.9,a.121.1.1 125177,125178 2i10A 202 5.70e-18 a.4.1.9,a.121.1.1 136960,136961 2q24A 194 6.01e-18 2o7oA 207 7.17e-18 a.4.1.9,a.121.1.1 138930,138931 2g3bA 208 8.07e-18 a.4.1.9,a.121.1.1 134558,134559 2d6yA 202 8.68e-18 a.4.1.9,a.121.1.1 131313,131314 2optA 234 1.17e-17 1a6i 217 1.67e-17 1t33A 224 1.93e-17 a.4.1.9,a.121.1.1 106295,106296 2dg8A 193 2.99e-17 2qkoA 215 3.02e-17 2oerA 214 3.25e-17 3bqyA 209 3.99e-17 2tct 207 4.38e-17 3bjbA 207 5.76e-17 2np5A 203 5.85e-17 a.4.1.9,a.121.1.1 138424,138425 2rekA 199 8.15e-17 2g7gA 213 8.45e-17 a.4.1.9,a.121.1.1 134732,134733 2yveA 185 8.46e-17 2fd5A 180 1.39e-16 a.4.1.9,a.121.1.1 133291,133292 2guhA 214 1.46e-16 2qwtA 196 3.42e-16 2oi8A 216 3.61e-16 2eh3A 179 4.04e-16 1z0xA 220 7.17e-16 a.4.1.9,a.121.1.1 124334,124335 1v7bA 185 2.97e-15 a.4.1.9,a.121.1.1 119861,119862 2g7lA 243 5.54e-15 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 5.98e-15 2hkuA 215 4.12e-14 2jn6A 97 3.627 2hnlA 225 4.058 1jlwA 219 4.638 a.45.1.1,c.47.1.5 71741,71742 1hlvA 131 6.078 a.4.1.7,a.4.1.7 65854,65855 1r9oA 477 6.360 a.104.1.1 104878 1wdcC 156 6.441 a.39.1.5 17317 1a0p 290 7.912 1ho8A 480 9.528 a.118.1.9 61107 2on5A 206 9.567 1ngkA 128 12.08 a.1.1.1 85673 1oe8A 211 12.35 a.45.1.1,c.47.1.5 86905,86906 2pg4A 95 12.62 1f21A 155 15.19 c.55.3.1 33550 3b6hA 498 16.33 2ii0A 490 18.15 a.117.1.1 137425 1cjgA 62 18.50 a.35.1.5 17112 2ekcA 262 18.91 1nhyA 219 18.99 a.45.1.1,c.47.1.5 80520,80521 1xo0A 324 19.20 a.60.9.1,d.163.1.1 115674,115675 1m48A 133 21.08 a.26.1.2 74443 1on2A 142 21.30 a.4.5.24,a.76.1.1 87103,87104 3c6gA 479 22.12 2gsqA 202 23.27 a.45.1.1,c.47.1.5 17715,33009 2bjcA 62 24.21 a.35.1.5 128620 2q88A 257 25.46 1fseA 74 27.47 a.4.6.2 60000 3bkbA 377 28.63 1g8lA 411 29.49 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2c1mA 424 29.64 2a2rA 210 29.80 a.45.1.1,c.47.1.5 126058,126059 1f5nA 592 30.29 a.114.1.1,c.37.1.8 19077,32152 2ahrA 259 31.99 a.100.1.10,c.2.1.6 126775,126776 3cblA 377 32.89 2pvfA 334 33.79 2rcyA 262 33.82 1yn9A 169 34.59 2qkbA 154 35.86 2dvzA 314 36.58 1zcbA 362 36.76 a.66.1.1,c.37.1.8 124901,124902 1x1zA 252 38.83 c.1.2.3 121613 1f2eA 201 39.42 a.45.1.1,c.47.1.5 17745,33039 1ny1A 240 40.73 c.6.2.3 86395 2v9vA 135 40.97 1jl1A 155 42.77 c.55.3.1 66821 2dt5A 211 43.45 a.4.5.38,c.2.1.12 131708,131709 1a0fA 201 45.44 a.45.1.1,c.47.1.5 17737,33031 2rfpA 171 46.48 1jpzA 473 47.27 a.104.1.1 67069 1f24A 402 47.46 a.104.1.1 18953 1ltqA 301 48.29 c.108.1.9,c.37.1.1 78208,78209 2ntoA 201 48.30 1fw1A 216 50.18 a.45.1.1,c.47.1.5 60051,60052 1k3yA 221 50.41 a.45.1.1,c.47.1.5 77245,77246 2cvdA 198 51.06 a.45.1.1,c.47.1.5 130861,130862 1n2aA 201 51.78 a.45.1.1,c.47.1.5 91553,91554 2rn7A 108 52.02 1sedA 117 52.15 a.219.1.1 105449 3bofA 566 53.08 3chhA 336 53.11 2reiA 318 53.96 2o09A 189 56.50 1xcbA 211 56.64 a.4.5.38,c.2.1.12 109552,109553 1je8A 82 56.66 a.4.6.2 77108 1zljA 78 57.62 1qqcA 773 58.25 c.55.3.5,e.8.1.1 33724,43013 1j09A 468 58.50 a.97.1.1,c.26.1.1 77025,77026 1xszA 356 58.88 a.118.3.1,d.129.9.1 116005,116006 2pvqA 201 59.13 2eb2A 334 60.08 1anfA 370 60.42 c.94.1.1 35776 2hi4A 495 60.82 1f1eA 154 61.26 a.22.1.2 64927 1m0uA 249 61.40 a.45.1.1,c.47.1.5 78359,78360 1gvfA 286 61.81 c.1.10.2 70599 1w07A 659 64.67 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1u61A 138 65.34 a.149.1.1 107696 1f3aA 222 65.42 a.45.1.1,c.47.1.5 17701,32995 3d0cA 314 65.67 1fnsA 196 66.56 c.62.1.1 34136 2fnaA 357 68.09 a.4.5.11,c.37.1.20 133809,133810 1ciyA 590 68.65 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1pgtA 210 68.69 a.45.1.1,c.47.1.5 17515,32809 2dtr 226 69.11 3inkC 133 70.12 a.26.1.2 16881 2dnxA 130 72.78 1nfpA 228 74.01 c.1.16.2 29555 1qhtA 775 74.22 c.55.3.5,e.8.1.1 33722,43011 2gykA 86 74.48 2qhnA 323 74.90 1ug3A 339 76.35 a.118.1.14,a.118.1.14 119671,119672 1k94A 165 76.86 a.39.1.8 68333 1tu7A 208 76.87 a.45.1.1,c.47.1.5 112653,112654 2f5xA 312 78.85 1p4wA 99 79.45 a.4.6.2 87783 2vlqA 86 79.59 1lvaA 258 79.73 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 3bbyA 215 79.96 1jlvA 209 80.47 a.45.1.1,c.47.1.5 71729,71730 2o3fA 111 81.01 1aw9A 216 81.58 a.45.1.1,c.47.1.5 17736,33030 2jamA 304 83.51 1elrA 131 83.59 a.118.8.1 19209 2f9iB 285 83.90 1s69A 124 84.46 a.1.1.1 105305 1phkA 298 85.73 d.144.1.7 41635 3b2tA 311 86.90 1f4qA 165 87.24 a.39.1.8 17360 2hiqA 113 87.55 d.58.4.12 136529 2fuqA 747 87.86 1u13A 455 88.96 a.104.1.1 107578 2q0zX 339 89.21 1bu7A 455 89.33 a.104.1.1 18937