# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 1.68e-18 3bcgA 215 4.10e-18 2f07A 197 4.70e-18 2uxuA 210 1.17e-17 2hyjA 200 1.25e-17 1vi0A 206 1.68e-17 a.4.1.9,a.121.1.1 100720,100721 3ccyA 203 1.80e-17 3bhqA 211 2.03e-17 2rasA 212 2.40e-17 2genA 197 2.40e-17 a.4.1.9,a.121.1.1 135062,135063 3cdlA 203 2.53e-17 2g7sA 194 2.61e-17 a.4.1.9,a.121.1.1 134737,134738 2qtqA 213 2.89e-17 2ibdA 204 3.43e-17 2fq4A 192 3.62e-17 a.4.1.9,a.121.1.1 133937,133938 3b81A 203 3.91e-17 2zb9A 214 4.40e-17 3bruA 222 4.88e-17 2id6A 202 4.95e-17 2dg7A 195 5.25e-17 3crjA 199 5.85e-17 3c2bA 221 8.67e-17 1pb6A 212 8.79e-17 a.4.1.9,a.121.1.1 88017,88018 2iekA 200 1.25e-16 2id3A 225 1.38e-16 a.4.1.9,a.121.1.1 137261,137262 2hytA 197 1.65e-16 2of7A 260 1.87e-16 1qvtA 194 2.17e-16 a.4.1.9,a.121.1.1 104602,104603 1t56A 216 2.61e-16 a.4.1.9,a.121.1.1 106428,106429 1rktA 205 2.86e-16 a.4.1.9,a.121.1.1 97623,97624 1zkgA 212 2.91e-16 a.4.1.9,a.121.1.1 125194,125195 3cjdA 198 3.07e-16 2jj7A 186 3.61e-16 2fx0A 201 3.89e-16 a.4.1.9,a.121.1.1 134269,134270 1z77A 200 4.17e-16 a.4.1.9,a.121.1.1 124588,124589 2iaiA 230 4.72e-16 3colA 196 4.80e-16 1sgmA 191 5.32e-16 a.4.1.9,a.121.1.1 105537,105538 3cwrA 208 5.83e-16 2qcoA 210 6.41e-16 1jt6A 188 6.58e-16 a.4.1.9,a.121.1.1 67247,67248 2qibA 231 7.86e-16 2o7tA 199 8.08e-16 2raeA 207 1.06e-15 2gfnA 209 1.08e-15 a.4.1.9,a.121.1.1 135101,135102 2nx4A 194 1.73e-15 2d6yA 202 2.68e-15 a.4.1.9,a.121.1.1 131313,131314 2fbqA 235 3.00e-15 a.4.1.9,a.121.1.1 133256,133257 2i10A 202 3.75e-15 a.4.1.9,a.121.1.1 136960,136961 1ui5A 215 4.24e-15 a.4.1.9,a.121.1.1 107856,107857 2zcmA 192 4.62e-15 2q24A 194 4.92e-15 2g3bA 208 4.98e-15 a.4.1.9,a.121.1.1 134558,134559 1zk8A 183 5.59e-15 a.4.1.9,a.121.1.1 125177,125178 3bniA 229 9.82e-15 2iu5A 195 1.31e-14 2oerA 214 1.52e-14 1t33A 224 1.88e-14 a.4.1.9,a.121.1.1 106295,106296 2vprA 207 2.91e-14 2dg8A 193 3.48e-14 2np5A 203 3.97e-14 a.4.1.9,a.121.1.1 138424,138425 1a6i 217 4.19e-14 2qwtA 196 4.75e-14 2guhA 214 6.33e-14 2optA 234 7.49e-14 2o7oA 207 7.58e-14 a.4.1.9,a.121.1.1 138930,138931 3bjbA 207 7.61e-14 2rekA 199 7.92e-14 3bqyA 209 1.10e-13 2fd5A 180 1.10e-13 a.4.1.9,a.121.1.1 133291,133292 2yveA 185 1.80e-13 2eh3A 179 2.32e-13 2qkoA 215 2.38e-13 2tct 207 5.20e-13 1z0xA 220 6.02e-13 a.4.1.9,a.121.1.1 124334,124335 1v7bA 185 6.73e-13 a.4.1.9,a.121.1.1 119861,119862 2g7gA 213 8.30e-13 a.4.1.9,a.121.1.1 134732,134733 2oi8A 216 1.04e-12 2g7lA 243 1.38e-12 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 2.00e-11 2hkuA 215 3.64e-11 3bbyA 215 3.195 2on5A 206 4.058 2gsqA 202 7.268 a.45.1.1,c.47.1.5 17715,33009 2hnlA 225 10.14 1jlwA 219 11.39 a.45.1.1,c.47.1.5 71741,71742 1fw1A 216 11.91 a.45.1.1,c.47.1.5 60051,60052 1oe8A 211 13.47 a.45.1.1,c.47.1.5 86905,86906 1jlvA 209 13.93 a.45.1.1,c.47.1.5 71729,71730 2jn6A 97 20.65 1hlvA 131 23.27 a.4.1.7,a.4.1.7 65854,65855 2imiA 221 23.64 1ciyA 590 23.76 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1ltqA 301 24.26 c.108.1.9,c.37.1.1 78208,78209 2cz2A 223 27.48 1tu7A 208 28.60 a.45.1.1,c.47.1.5 112653,112654 2a2rA 210 31.23 a.45.1.1,c.47.1.5 126058,126059 2pg4A 95 35.21 1ny1A 240 38.58 c.6.2.3 86395 1ho8A 480 39.78 a.118.1.9 61107 1zdyA 307 40.05 d.313.1.1 124961 3cbuA 214 42.65 2ntoA 201 42.75 1ciy 590 43.68 1htyA 1015 46.69 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 2pzzA 147 47.66 2hi4A 495 48.97 1edg 380 50.95 1uwkA 557 53.42 e.51.1.1 108065 1v2aA 210 54.70 a.45.1.1,c.47.1.5 100263,100264 1yq2A 1024 56.21 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 1r9oA 477 57.09 a.104.1.1 104878 1pgtA 210 57.12 a.45.1.1,c.47.1.5 17515,32809 1ex2A 189 61.80 c.51.4.2 33225 2eueA 279 62.82 1cjgA 62 67.46 a.35.1.5 17112 2cvdA 198 67.88 a.45.1.1,c.47.1.5 130861,130862 2q0zX 339 67.96 2q88A 257 68.90 1n2aA 201 69.04 a.45.1.1,c.47.1.5 91553,91554 2oi2A 292 70.21 1pp7U 131 72.98 a.4.5.44 94973 1w6kA 732 74.15 a.102.4.2,a.102.4.2 114271,114272 1phkA 298 77.27 d.144.1.7 41635 2oxoA 103 78.50 1uuqA 440 79.18 c.1.8.3 100015 17gsA 210 79.60 a.45.1.1,c.47.1.5 17524,32818 1j1bA 420 80.01 d.144.1.7 90758 2rn7A 108 80.35 1k3yA 221 80.54 a.45.1.1,c.47.1.5 77245,77246 1ug3A 339 82.51 a.118.1.14,a.118.1.14 119671,119672 1lbkA 208 85.38 a.45.1.1,c.47.1.5 73809,73810 1hleA 345 86.37 e.1.1.1 42618 1dmmA 131 88.75 d.17.4.3 38114 2ow6A 1045 89.53