# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 2.86e-25 1vi0A 206 2.75e-24 a.4.1.9,a.121.1.1 100720,100721 3bcgA 215 2.89e-24 3ccyA 203 3.35e-24 3bhqA 211 5.37e-24 2ibdA 204 6.41e-24 2f07A 197 7.29e-24 3cdlA 203 1.24e-23 2g7sA 194 1.28e-23 a.4.1.9,a.121.1.1 134737,134738 2id6A 202 1.38e-23 2rasA 212 1.59e-23 2uxuA 210 1.70e-23 2hyjA 200 1.83e-23 1qvtA 194 2.04e-23 a.4.1.9,a.121.1.1 104602,104603 2iekA 200 2.39e-23 2qtqA 213 2.78e-23 3c2bA 221 3.34e-23 1rktA 205 3.35e-23 a.4.1.9,a.121.1.1 97623,97624 3crjA 199 3.72e-23 2dg7A 195 4.41e-23 2zb9A 214 5.27e-23 3b81A 203 5.51e-23 1pb6A 212 5.56e-23 a.4.1.9,a.121.1.1 88017,88018 2fq4A 192 6.02e-23 a.4.1.9,a.121.1.1 133937,133938 3bruA 222 6.88e-23 2hytA 197 6.99e-23 2genA 197 1.03e-22 a.4.1.9,a.121.1.1 135062,135063 1jt6A 188 1.18e-22 a.4.1.9,a.121.1.1 67247,67248 2id3A 225 1.67e-22 a.4.1.9,a.121.1.1 137261,137262 2qcoA 210 2.43e-22 2jj7A 186 2.65e-22 1zkgA 212 2.94e-22 a.4.1.9,a.121.1.1 125194,125195 2raeA 207 3.21e-22 1z77A 200 3.63e-22 a.4.1.9,a.121.1.1 124588,124589 3cwrA 208 4.11e-22 1t56A 216 4.44e-22 a.4.1.9,a.121.1.1 106428,106429 2qibA 231 6.50e-22 2fx0A 201 7.02e-22 a.4.1.9,a.121.1.1 134269,134270 3colA 196 7.44e-22 2iaiA 230 8.00e-22 2fbqA 235 8.08e-22 a.4.1.9,a.121.1.1 133256,133257 1ui5A 215 8.40e-22 a.4.1.9,a.121.1.1 107856,107857 2of7A 260 8.89e-22 2zcmA 192 9.86e-22 2o7tA 199 1.27e-21 2iu5A 195 1.50e-21 2q24A 194 2.81e-21 3cjdA 198 2.93e-21 2gfnA 209 3.61e-21 a.4.1.9,a.121.1.1 135101,135102 2d6yA 202 3.63e-21 a.4.1.9,a.121.1.1 131313,131314 1sgmA 191 4.54e-21 a.4.1.9,a.121.1.1 105537,105538 2vprA 207 6.44e-21 2nx4A 194 6.93e-21 1zk8A 183 7.81e-21 a.4.1.9,a.121.1.1 125177,125178 2g3bA 208 9.46e-21 a.4.1.9,a.121.1.1 134558,134559 2i10A 202 1.13e-20 a.4.1.9,a.121.1.1 136960,136961 3bniA 229 1.48e-20 2o7oA 207 2.48e-20 a.4.1.9,a.121.1.1 138930,138931 3bjbA 207 3.39e-20 2dg8A 193 4.01e-20 3bqyA 209 4.46e-20 2optA 234 5.51e-20 1t33A 224 6.24e-20 a.4.1.9,a.121.1.1 106295,106296 1a6i 217 6.48e-20 2rekA 199 1.82e-19 2guhA 214 1.88e-19 2yveA 185 1.90e-19 2oerA 214 2.05e-19 2qkoA 215 2.36e-19 2qwtA 196 2.92e-19 2np5A 203 3.32e-19 a.4.1.9,a.121.1.1 138424,138425 2tct 207 3.41e-19 2g7gA 213 7.77e-19 a.4.1.9,a.121.1.1 134732,134733 2eh3A 179 1.67e-18 2fd5A 180 1.78e-18 a.4.1.9,a.121.1.1 133291,133292 1z0xA 220 2.16e-18 a.4.1.9,a.121.1.1 124334,124335 2oi8A 216 2.96e-18 1v7bA 185 2.20e-17 a.4.1.9,a.121.1.1 119861,119862 2hxoA 237 1.07e-16 2g7lA 243 1.24e-16 a.4.1.9,a.121.1.1 134734,134735 2hkuA 215 4.19e-16 1hlvA 131 0.9431 a.4.1.7,a.4.1.7 65854,65855 1jlwA 219 1.176 a.45.1.1,c.47.1.5 71741,71742 3c6gA 479 1.627 2jn6A 97 2.699 3bofA 566 5.254 2dg6A 222 5.605 2on5A 206 6.733 2hoqA 241 7.106 2scpA 174 7.487 a.39.1.5 17256 1on2A 142 8.105 a.4.5.24,a.76.1.1 87103,87104 2pg4A 95 8.599 2dt5A 211 9.139 a.4.5.38,c.2.1.12 131708,131709 2fnaA 357 9.280 a.4.5.11,c.37.1.20 133809,133810 1riiA 265 9.442 c.60.1.1 111807 1lvaA 258 10.30 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2e9xD 223 10.63 1m48A 133 11.46 a.26.1.2 74443 1r9oA 477 11.54 a.104.1.1 104878 1xd3A 230 12.10 d.3.1.6 115145 2v9vA 135 12.88 2fncA 381 13.13 1qqcA 773 13.19 c.55.3.5,e.8.1.1 33724,43013 1phkA 298 13.29 d.144.1.7 41635 3b6hA 498 13.49 2f1sA 186 15.19 2pzzA 147 15.28 2hnlA 225 16.88 1jlvA 209 16.94 a.45.1.1,c.47.1.5 71729,71730 2ghaA 382 17.17 1wdcC 156 17.35 a.39.1.5 17317 2gsqA 202 17.38 a.45.1.1,c.47.1.5 17715,33009 1d0cA 444 18.83 d.174.1.1 64769 1xo0A 324 19.28 a.60.9.1,d.163.1.1 115674,115675 2o09A 189 20.42 1nq7A 244 20.61 a.123.1.1 92047 2vg2A 284 21.26 2og2A 359 21.56 1cjgA 62 21.72 a.35.1.5 17112 2pftA 571 21.96 1q06A 135 24.59 a.6.1.3 95493 1ho8A 480 24.80 a.118.1.9 61107 1y1xA 191 25.49 a.39.1.8 116374 1xsvA 113 26.67 a.4.13.3 116003 2a2rA 210 27.43 a.45.1.1,c.47.1.5 126058,126059 2jfkA 433 27.44 1zcbA 362 28.70 a.66.1.1,c.37.1.8 124901,124902 1m0uA 249 28.85 a.45.1.1,c.47.1.5 78359,78360 1qrrA 394 29.85 c.2.1.2 29824 2bjcA 62 31.08 a.35.1.5 128620 1m7vA 363 31.10 d.174.1.1 78748 1j32A 388 33.30 c.67.1.1 77067 1el4A 195 34.12 a.39.1.5 59453 1uehA 253 34.22 c.101.1.1 99259 1f21A 155 35.11 c.55.3.1 33550 2ab5A 269 36.23 1sedA 117 37.44 a.219.1.1 105449 1fseA 74 37.45 a.4.6.2 60000 1gnwA 211 38.39 a.45.1.1,c.47.1.5 17727,33021 1qs0A 407 39.52 c.36.1.11 31829 1zejA 293 39.65 2ccmA 191 40.03 2rcyA 262 43.23 1ciyA 590 43.47 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1s7oA 113 45.25 a.4.13.3 105354 1n2aA 201 45.49 a.45.1.1,c.47.1.5 91553,91554 1wtyA 119 46.52 a.24.16.2 114880 2o3fA 111 47.35 1mhyD 521 47.47 a.25.1.2 16780 2ia2A 265 48.78 1d3vA 323 50.42 c.42.1.1 32559 1rpnA 335 50.69 c.2.1.2 97708 2ptzA 432 51.40 1f1eA 154 51.56 a.22.1.2 64927 3cblA 377 52.42 2hnhA 910 52.48 2qguA 211 53.00 3bbyA 215 53.36 1sfxA 109 54.05 a.4.5.50 105505 1zljA 78 57.58 2yzqA 282 59.33 2eb2A 334 60.17 1ckeA 227 60.50 c.37.1.1 31846 1f6yA 262 61.40 c.1.21.2 29673 1fnsA 196 62.04 c.62.1.1 34136 2aqwA 332 63.64 c.1.2.3 127184 2bmbA 545 63.68 1uiuA 502 64.95 c.94.1.1 99434 2bptA 861 65.37 a.118.1.1 128951 2r8wA 332 65.41 1qydA 313 65.94 c.2.1.2 96583 1mqiA 263 66.23 c.94.1.1 91398 2ojpA 292 67.30 1ia8A 289 67.49 d.144.1.7 62112 1z6gA 218 67.52 1zarA 282 67.92 a.4.5.56,d.144.1.9 124843,124844 1e6yB 433 68.19 a.89.1.1,d.58.31.2 18535,39453 2yr1A 257 68.27 2no4A 240 69.70 1oqyA 368 69.83 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 2cz2A 223 71.70 2bbrA 195 71.91 1w7lA 422 73.09 c.67.1.1 109226 1ytvA 366 73.21 c.94.1.1 124016 1ed5A 444 74.13 d.174.1.1 42530 1lufA 343 74.96 d.144.1.7 78223 1ek6A 348 75.02 c.2.1.2 29800 3c4zA 543 77.61 2pi6A 361 77.83 2c5uA 375 78.76 1m65A 245 78.82 c.6.3.1 84847 1fc6A 388 79.46 b.36.1.3,c.14.1.2 64738,64739 1anfA 370 79.86 c.94.1.1 35776 1j6pA 418 80.71 b.92.1.4,c.1.9.9 77089,77090 1yn9A 169 80.79 1eu8A 409 81.14 c.94.1.1 59502 2bo1A 101 82.81 1lrrA 131 84.15 d.228.1.1 78165 1a0dA 440 85.11 c.1.15.3 29533 1n7hA 381 85.28 c.2.1.2 80250 1ccwB 483 86.10 c.1.19.2 29646 1axdA 209 87.28 a.45.1.1,c.47.1.5 17730,33024 2qpqA 301 87.46 1s1iG 119 87.70 i.1.1.1 105181 2jabA 136 89.45 1y9aA 360 89.49 1g6aA 271 89.55 e.3.1.1 42704