# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 2.68e-20 1vi0A 206 5.41e-20 a.4.1.9,a.121.1.1 100720,100721 3ccyA 203 6.05e-20 3bcgA 215 9.80e-20 3bhqA 211 1.08e-19 2f07A 197 1.20e-19 2id6A 202 1.43e-19 2ibdA 204 1.68e-19 2uxuA 210 1.75e-19 2iekA 200 1.97e-19 2rasA 212 2.40e-19 2qtqA 213 2.41e-19 2g7sA 194 2.48e-19 a.4.1.9,a.121.1.1 134737,134738 1qvtA 194 2.52e-19 a.4.1.9,a.121.1.1 104602,104603 2hyjA 200 2.63e-19 1rktA 205 2.96e-19 a.4.1.9,a.121.1.1 97623,97624 3crjA 199 3.42e-19 3c2bA 221 3.76e-19 2dg7A 195 3.90e-19 2fq4A 192 4.77e-19 a.4.1.9,a.121.1.1 133937,133938 3b81A 203 4.82e-19 3cdlA 203 5.85e-19 3bruA 222 6.43e-19 2zb9A 214 6.54e-19 1pb6A 212 6.59e-19 a.4.1.9,a.121.1.1 88017,88018 2hytA 197 7.59e-19 1jt6A 188 9.20e-19 a.4.1.9,a.121.1.1 67247,67248 2genA 197 9.82e-19 a.4.1.9,a.121.1.1 135062,135063 2qcoA 210 1.37e-18 1zkgA 212 1.51e-18 a.4.1.9,a.121.1.1 125194,125195 2jj7A 186 1.84e-18 1z77A 200 1.90e-18 a.4.1.9,a.121.1.1 124588,124589 2raeA 207 2.38e-18 3cwrA 208 2.48e-18 3colA 196 3.18e-18 2id3A 225 3.41e-18 a.4.1.9,a.121.1.1 137261,137262 2fx0A 201 3.71e-18 a.4.1.9,a.121.1.1 134269,134270 2iaiA 230 3.76e-18 1ui5A 215 4.63e-18 a.4.1.9,a.121.1.1 107856,107857 2zcmA 192 5.55e-18 2fbqA 235 5.56e-18 a.4.1.9,a.121.1.1 133256,133257 1t56A 216 5.89e-18 a.4.1.9,a.121.1.1 106428,106429 2of7A 260 6.54e-18 2qibA 231 6.57e-18 3cjdA 198 1.02e-17 2iu5A 195 1.09e-17 2o7tA 199 1.18e-17 2q24A 194 1.22e-17 1sgmA 191 1.28e-17 a.4.1.9,a.121.1.1 105537,105538 2d6yA 202 1.31e-17 a.4.1.9,a.121.1.1 131313,131314 2vprA 207 1.60e-17 2gfnA 209 1.73e-17 a.4.1.9,a.121.1.1 135101,135102 1zk8A 183 2.27e-17 a.4.1.9,a.121.1.1 125177,125178 2nx4A 194 2.28e-17 3bniA 229 3.75e-17 2i10A 202 3.82e-17 a.4.1.9,a.121.1.1 136960,136961 2o7oA 207 6.36e-17 a.4.1.9,a.121.1.1 138930,138931 1a6i 217 8.12e-17 2g3bA 208 9.53e-17 a.4.1.9,a.121.1.1 134558,134559 2dg8A 193 9.60e-17 2optA 234 9.70e-17 1t33A 224 1.34e-16 a.4.1.9,a.121.1.1 106295,106296 3bjbA 207 1.48e-16 3bqyA 209 1.61e-16 2yveA 185 2.00e-16 2guhA 214 2.46e-16 2qkoA 215 2.71e-16 2rekA 199 3.47e-16 2tct 207 4.30e-16 2oerA 214 4.46e-16 2np5A 203 5.12e-16 a.4.1.9,a.121.1.1 138424,138425 2g7gA 213 8.08e-16 a.4.1.9,a.121.1.1 134732,134733 2qwtA 196 9.13e-16 2fd5A 180 1.36e-15 a.4.1.9,a.121.1.1 133291,133292 2oi8A 216 1.80e-15 2eh3A 179 1.93e-15 1z0xA 220 2.32e-15 a.4.1.9,a.121.1.1 124334,124335 1v7bA 185 9.61e-15 a.4.1.9,a.121.1.1 119861,119862 2g7lA 243 4.48e-14 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 4.88e-14 2hkuA 215 2.16e-13 1hlvA 131 1.011 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 2.048 1a0p 290 5.316 2pg4A 95 6.658 1jlwA 219 8.060 a.45.1.1,c.47.1.5 71741,71742 1j09A 468 8.190 a.97.1.1,c.26.1.1 77025,77026 3c6gA 479 9.738 1m48A 133 9.97 a.26.1.2 74443 2dt5A 211 10.64 a.4.5.38,c.2.1.12 131708,131709 2hnlA 225 11.38 2rn7A 108 12.45 2ekcA 262 13.02 1wdcC 156 13.68 a.39.1.5 17317 2on5A 206 14.05 1cjgA 62 15.54 a.35.1.5 17112 1lvaA 258 16.70 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1g8lA 411 19.87 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2v9vA 135 20.77 3bbyA 215 21.55 1xcbA 211 22.65 a.4.5.38,c.2.1.12 109552,109553 1on2A 142 24.90 a.4.5.24,a.76.1.1 87103,87104 1xo0A 324 25.89 a.60.9.1,d.163.1.1 115674,115675 1fseA 74 27.05 a.4.6.2 60000 1f21A 155 27.19 c.55.3.1 33550 3bofA 566 30.75 1ltqA 301 32.28 c.108.1.9,c.37.1.1 78208,78209 1xsvA 113 33.02 a.4.13.3 116003 2o3fA 111 33.34 1r9oA 477 34.60 a.104.1.1 104878 1je8A 82 35.40 a.4.6.2 77108 1ny1A 240 37.46 c.6.2.3 86395 1jlvA 209 38.15 a.45.1.1,c.47.1.5 71729,71730 1zljA 78 38.85 2bjcA 62 39.14 a.35.1.5 128620 1m5yA 408 40.83 a.223.1.2,d.26.1.1,d.26.1.1 78664,78665,78666 2rcyA 262 41.01 2r8wA 332 41.38 1s7oA 113 42.22 a.4.13.3 105354 2o09A 189 42.86 1a0fA 201 44.07 a.45.1.1,c.47.1.5 17737,33031 1nhyA 219 44.72 a.45.1.1,c.47.1.5 80520,80521 2ii0A 490 45.96 a.117.1.1 137425 3bkbA 377 48.28 1n2aA 201 48.72 a.45.1.1,c.47.1.5 91553,91554 1fnsA 196 50.80 c.62.1.1 34136 1f2eA 201 50.80 a.45.1.1,c.47.1.5 17745,33039 1ct5A 256 51.33 c.1.6.2 28663 1vbjA 281 53.65 1f1eA 154 53.88 a.22.1.2 64927 1f5nA 592 54.26 a.114.1.1,c.37.1.8 19077,32152 3cbuA 214 54.51 1sedA 117 55.09 a.219.1.1 105449 2fnaA 357 56.50 a.4.5.11,c.37.1.20 133809,133810 3inkC 133 58.66 a.26.1.2 16881 1qqcA 773 58.92 c.55.3.5,e.8.1.1 33724,43013 1anfA 370 60.12 c.94.1.1 35776 1ho8A 480 61.18 a.118.1.9 61107 1fw1A 216 63.12 a.45.1.1,c.47.1.5 60051,60052 1wtyA 119 64.39 a.24.16.2 114880 2q88A 257 64.45 1sfxA 109 64.87 a.4.5.50 105505 1lrrA 131 66.97 d.228.1.1 78165 2v9dA 343 67.15 1yn9A 169 68.11 1zcbA 362 69.65 a.66.1.1,c.37.1.8 124901,124902 2hiqA 113 69.91 d.58.4.12 136529 2qguA 211 71.15 2g3fA 421 72.64 2dtr 226 72.67 2ghaA 382 74.05 1p4wA 99 77.77 a.4.6.2 87783 1s1iG 119 78.39 i.1.1.1 105181 4crxA 322 84.71 a.60.9.1,d.163.1.1 18095,42155 2dvzA 314 84.92 2eb2A 334 86.54 1s69A 124 88.05 a.1.1.1 105305