# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 8.80e-24 3bcgA 215 9.32e-24 3bhqA 211 2.35e-23 3ccyA 203 2.62e-23 1vi0A 206 2.78e-23 a.4.1.9,a.121.1.1 100720,100721 2zb9A 214 3.52e-23 2dg7A 195 4.89e-23 2uxuA 210 5.09e-23 2f07A 197 5.80e-23 2hyjA 200 8.32e-23 2ibdA 204 9.27e-23 2rasA 212 1.00e-22 2id6A 202 1.27e-22 1rktA 205 1.29e-22 a.4.1.9,a.121.1.1 97623,97624 3cdlA 203 1.43e-22 2g7sA 194 1.59e-22 a.4.1.9,a.121.1.1 134737,134738 3b81A 203 1.62e-22 2iekA 200 1.79e-22 3crjA 199 1.80e-22 2genA 197 1.85e-22 a.4.1.9,a.121.1.1 135062,135063 2fq4A 192 1.87e-22 a.4.1.9,a.121.1.1 133937,133938 3c2bA 221 1.88e-22 2qtqA 213 1.93e-22 1qvtA 194 3.13e-22 a.4.1.9,a.121.1.1 104602,104603 2raeA 207 4.69e-22 3cjdA 198 4.83e-22 3bruA 222 4.92e-22 2qcoA 210 7.79e-22 1pb6A 212 8.25e-22 a.4.1.9,a.121.1.1 88017,88018 2of7A 260 8.69e-22 2hytA 197 9.35e-22 1zkgA 212 1.15e-21 a.4.1.9,a.121.1.1 125194,125195 1jt6A 188 1.19e-21 a.4.1.9,a.121.1.1 67247,67248 1z77A 200 1.22e-21 a.4.1.9,a.121.1.1 124588,124589 3cwrA 208 1.59e-21 1t56A 216 2.50e-21 a.4.1.9,a.121.1.1 106428,106429 2jj7A 186 2.86e-21 2iaiA 230 3.13e-21 3colA 196 3.16e-21 2id3A 225 3.23e-21 a.4.1.9,a.121.1.1 137261,137262 2zcmA 192 3.41e-21 2fbqA 235 3.86e-21 a.4.1.9,a.121.1.1 133256,133257 2iu5A 195 5.52e-21 2nx4A 194 6.01e-21 2qibA 231 6.34e-21 2o7tA 199 6.75e-21 2gfnA 209 7.09e-21 a.4.1.9,a.121.1.1 135101,135102 1ui5A 215 7.09e-21 a.4.1.9,a.121.1.1 107856,107857 2fx0A 201 8.70e-21 a.4.1.9,a.121.1.1 134269,134270 1sgmA 191 1.10e-20 a.4.1.9,a.121.1.1 105537,105538 2q24A 194 2.43e-20 2i10A 202 2.95e-20 a.4.1.9,a.121.1.1 136960,136961 2o7oA 207 3.21e-20 a.4.1.9,a.121.1.1 138930,138931 1zk8A 183 3.56e-20 a.4.1.9,a.121.1.1 125177,125178 2d6yA 202 4.57e-20 a.4.1.9,a.121.1.1 131313,131314 2vprA 207 4.72e-20 1a6i 217 6.88e-20 3bniA 229 7.37e-20 2dg8A 193 7.53e-20 2g3bA 208 1.47e-19 a.4.1.9,a.121.1.1 134558,134559 1t33A 224 1.82e-19 a.4.1.9,a.121.1.1 106295,106296 2optA 234 2.23e-19 2oerA 214 2.79e-19 3bqyA 209 3.16e-19 2guhA 214 4.00e-19 2qkoA 215 4.02e-19 3bjbA 207 4.14e-19 2np5A 203 6.78e-19 a.4.1.9,a.121.1.1 138424,138425 2tct 207 8.36e-19 2yveA 185 9.10e-19 2g7gA 213 1.45e-18 a.4.1.9,a.121.1.1 134732,134733 2qwtA 196 1.54e-18 2rekA 199 1.68e-18 2fd5A 180 5.88e-18 a.4.1.9,a.121.1.1 133291,133292 2eh3A 179 6.79e-18 2oi8A 216 7.00e-18 1z0xA 220 1.08e-17 a.4.1.9,a.121.1.1 124334,124335 1v7bA 185 2.32e-17 a.4.1.9,a.121.1.1 119861,119862 2g7lA 243 9.26e-17 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 4.93e-16 2hkuA 215 9.43e-16 1hlvA 131 1.911 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 3.593 2hnlA 225 4.548 2dtr 226 6.520 1on2A 142 6.629 a.4.5.24,a.76.1.1 87103,87104 1jlwA 219 7.580 a.45.1.1,c.47.1.5 71741,71742 2on5A 206 8.357 1m48A 133 8.425 a.26.1.2 74443 2ekcA 262 9.763 1j09A 468 10.47 a.97.1.1,c.26.1.1 77025,77026 1a0p 290 10.75 2rfpA 171 11.09 1wdcC 156 12.38 a.39.1.5 17317 3c6gA 479 12.57 1x1zA 252 12.82 c.1.2.3 121613 2v9dA 343 14.40 2pg4A 95 18.58 2a2rA 210 18.58 a.45.1.1,c.47.1.5 126058,126059 1f21A 155 20.21 c.55.3.1 33550 1r9oA 477 21.52 a.104.1.1 104878 1s1iG 119 21.61 i.1.1.1 105181 1tu7A 208 22.43 a.45.1.1,c.47.1.5 112653,112654 2rn7A 108 24.08 2r8wA 332 24.34 1m0uA 249 24.53 a.45.1.1,c.47.1.5 78359,78360 2pzzA 147 26.92 1oqyA 368 28.40 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 2oezA 247 31.20 2eb2A 334 31.87 1qqcA 773 32.26 c.55.3.5,e.8.1.1 33724,43013 2ntoA 201 32.40 1oe8A 211 32.58 a.45.1.1,c.47.1.5 86905,86906 2v9vA 135 33.75 1a0fA 201 34.39 a.45.1.1,c.47.1.5 17737,33031 1f5nA 592 35.48 a.114.1.1,c.37.1.8 19077,32152 1ny1A 240 35.94 c.6.2.3 86395 3inkC 133 36.55 a.26.1.2 16881 2aamA 309 37.18 c.1.8.15 126489 1n2aA 201 37.46 a.45.1.1,c.47.1.5 91553,91554 1bl0A 129 40.26 a.4.1.8,a.4.1.8 16053,16054 1fw1A 216 41.51 a.45.1.1,c.47.1.5 60051,60052 2dt5A 211 42.42 a.4.5.38,c.2.1.12 131708,131709 2fnaA 357 42.72 a.4.5.11,c.37.1.20 133809,133810 2gsqA 202 42.93 a.45.1.1,c.47.1.5 17715,33009 3bkbA 377 43.01 1ho8A 480 43.25 a.118.1.9 61107 1lrvA 244 43.76 a.118.1.5 19146 1lvaA 258 45.59 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1xcbA 211 48.88 a.4.5.38,c.2.1.12 109552,109553 1xo0A 324 49.26 a.60.9.1,d.163.1.1 115674,115675 1nxcA 478 50.34 a.102.2.1 92293 2hiqA 113 52.41 d.58.4.12 136529 2qkbA 154 53.15 1g8lA 411 55.21 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1zd8A 227 55.28 1sedA 117 56.62 a.219.1.1 105449 2dvzA 314 57.53 1h4pA 408 58.28 c.1.8.3 90617 2ehhA 294 59.27 1ijbA 202 59.80 c.62.1.1 71229 1k3yA 221 59.82 a.45.1.1,c.47.1.5 77245,77246 3d0cA 314 59.87 1f2eA 201 61.62 a.45.1.1,c.47.1.5 17745,33039 2pvfA 334 64.47 1yn9A 169 66.08 1fseA 74 66.83 a.4.6.2 60000 2c4jA 218 67.09 a.45.1.1,c.47.1.5 129816,129817 1nhyA 219 67.67 a.45.1.1,c.47.1.5 80520,80521 2ptzA 432 68.43 2ahrA 259 69.38 a.100.1.10,c.2.1.6 126775,126776 2rfgA 297 70.12 2dtrA 226 72.24 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2fnoA 248 74.69 a.45.1.1,c.47.1.5 133821,133822 1fnsA 196 75.12 c.62.1.1 34136 1cjgA 62 75.55 a.35.1.5 17112 2bjcA 62 76.98 a.35.1.5 128620 2biiA 424 79.65 1je8A 82 81.00 a.4.6.2 77108 2jmlA 81 81.45 3cbuA 214 81.71 2ii0A 490 82.91 a.117.1.1 137425 2f5xA 312 83.29 3bbyA 215 83.72 1zljA 78 87.90 2q88A 257 87.93 2hwjA 205 89.20 3c9gA 142 89.37 2rcyA 262 89.71 17gsA 210 89.88 a.45.1.1,c.47.1.5 17524,32818