# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 2.80e-22 3bcgA 215 3.83e-22 3bhqA 211 6.72e-22 3ccyA 203 8.25e-22 2zb9A 214 8.62e-22 2f07A 197 1.05e-21 1vi0A 206 1.22e-21 a.4.1.9,a.121.1.1 100720,100721 2uxuA 210 1.27e-21 2ibdA 204 1.44e-21 2hyjA 200 1.80e-21 2id6A 202 2.01e-21 1rktA 205 2.01e-21 a.4.1.9,a.121.1.1 97623,97624 3c2bA 221 2.68e-21 2qtqA 213 2.79e-21 3b81A 203 2.96e-21 2genA 197 3.13e-21 a.4.1.9,a.121.1.1 135062,135063 2rasA 212 3.20e-21 3cdlA 203 3.49e-21 2g7sA 194 3.49e-21 a.4.1.9,a.121.1.1 134737,134738 2iekA 200 3.50e-21 3crjA 199 3.81e-21 2dg7A 195 3.82e-21 1qvtA 194 4.19e-21 a.4.1.9,a.121.1.1 104602,104603 2fq4A 192 4.81e-21 a.4.1.9,a.121.1.1 133937,133938 3bruA 222 9.99e-21 2raeA 207 1.08e-20 3cjdA 198 1.15e-20 1pb6A 212 1.31e-20 a.4.1.9,a.121.1.1 88017,88018 2qcoA 210 1.42e-20 1jt6A 188 1.66e-20 a.4.1.9,a.121.1.1 67247,67248 1zkgA 212 1.68e-20 a.4.1.9,a.121.1.1 125194,125195 2hytA 197 1.68e-20 1z77A 200 1.85e-20 a.4.1.9,a.121.1.1 124588,124589 2of7A 260 2.31e-20 2jj7A 186 2.48e-20 3cwrA 208 3.04e-20 2id3A 225 3.27e-20 a.4.1.9,a.121.1.1 137261,137262 2iaiA 230 4.28e-20 1t56A 216 5.38e-20 a.4.1.9,a.121.1.1 106428,106429 3colA 196 6.07e-20 2zcmA 192 6.40e-20 2fbqA 235 7.13e-20 a.4.1.9,a.121.1.1 133256,133257 2fx0A 201 7.14e-20 a.4.1.9,a.121.1.1 134269,134270 2gfnA 209 7.60e-20 a.4.1.9,a.121.1.1 135101,135102 1ui5A 215 8.39e-20 a.4.1.9,a.121.1.1 107856,107857 2nx4A 194 1.04e-19 2o7tA 199 1.24e-19 2qibA 231 1.48e-19 2iu5A 195 1.73e-19 1sgmA 191 1.79e-19 a.4.1.9,a.121.1.1 105537,105538 2q24A 194 2.91e-19 2vprA 207 3.40e-19 2i10A 202 4.55e-19 a.4.1.9,a.121.1.1 136960,136961 2d6yA 202 4.84e-19 a.4.1.9,a.121.1.1 131313,131314 1zk8A 183 5.87e-19 a.4.1.9,a.121.1.1 125177,125178 3bniA 229 5.90e-19 2o7oA 207 6.69e-19 a.4.1.9,a.121.1.1 138930,138931 1a6i 217 9.11e-19 2optA 234 1.36e-18 2g3bA 208 1.39e-18 a.4.1.9,a.121.1.1 134558,134559 2dg8A 193 1.40e-18 1t33A 224 1.55e-18 a.4.1.9,a.121.1.1 106295,106296 3bqyA 209 2.86e-18 3bjbA 207 3.57e-18 2oerA 214 4.33e-18 2qkoA 215 6.65e-18 2np5A 203 8.81e-18 a.4.1.9,a.121.1.1 138424,138425 2tct 207 9.08e-18 2guhA 214 1.01e-17 2yveA 185 1.09e-17 2rekA 199 1.10e-17 2qwtA 196 1.34e-17 2g7gA 213 1.97e-17 a.4.1.9,a.121.1.1 134732,134733 2oi8A 216 4.09e-17 2eh3A 179 4.53e-17 2fd5A 180 5.23e-17 a.4.1.9,a.121.1.1 133291,133292 1z0xA 220 7.42e-17 a.4.1.9,a.121.1.1 124334,124335 1v7bA 185 3.15e-16 a.4.1.9,a.121.1.1 119861,119862 2g7lA 243 7.98e-16 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 2.96e-15 2hkuA 215 4.59e-15 1hlvA 131 1.286 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 1.322 2hnlA 225 2.154 1on2A 142 2.798 a.4.5.24,a.76.1.1 87103,87104 1a0p 290 6.644 2rn7A 108 6.920 2pg4A 95 7.029 3c6gA 479 7.079 1j09A 468 8.411 a.97.1.1,c.26.1.1 77025,77026 1xcbA 211 9.136 a.4.5.38,c.2.1.12 109552,109553 1m48A 133 9.795 a.26.1.2 74443 2dt5A 211 11.16 a.4.5.38,c.2.1.12 131708,131709 1r9oA 477 13.95 a.104.1.1 104878 1wdcC 156 14.35 a.39.1.5 17317 1lvaA 258 14.51 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2on5A 206 14.95 1x1zA 252 15.40 c.1.2.3 121613 1f21A 155 15.52 c.55.3.1 33550 2ekcA 262 17.55 2rfpA 171 18.30 1ho8A 480 18.39 a.118.1.9 61107 1fseA 74 19.26 a.4.6.2 60000 3bbyA 215 19.96 2r8wA 332 20.04 2fnaA 357 20.06 a.4.5.11,c.37.1.20 133809,133810 1zljA 78 22.12 2v9vA 135 22.23 1oe8A 211 23.21 a.45.1.1,c.47.1.5 86905,86906 1je8A 82 23.37 a.4.6.2 77108 1sedA 117 23.68 a.219.1.1 105449 2a2rA 210 25.08 a.45.1.1,c.47.1.5 126058,126059 2ahrA 259 27.34 a.100.1.10,c.2.1.6 126775,126776 2eb2A 334 28.25 1m0uA 249 28.80 a.45.1.1,c.47.1.5 78359,78360 2dvzA 314 29.62 3inkC 133 30.12 a.26.1.2 16881 1zd8A 227 30.64 2ntoA 201 31.62 1xo0A 324 32.44 a.60.9.1,d.163.1.1 115674,115675 2bjcA 62 32.84 a.35.1.5 128620 1ltqA 301 33.47 c.108.1.9,c.37.1.1 78208,78209 2dtr 226 34.55 1cjgA 62 35.76 a.35.1.5 17112 1tu7A 208 36.02 a.45.1.1,c.47.1.5 112653,112654 1fw1A 216 36.66 a.45.1.1,c.47.1.5 60051,60052 2rcyA 262 36.96 2ptzA 432 38.22 1jlwA 219 40.79 a.45.1.1,c.47.1.5 71741,71742 2oezA 247 42.26 2v9dA 343 42.49 1f2eA 201 43.46 a.45.1.1,c.47.1.5 17745,33039 2q0zX 339 43.67 2o09A 189 45.68 3bkbA 377 46.31 1p4wA 99 47.43 a.4.6.2 87783 1a0fA 201 49.52 a.45.1.1,c.47.1.5 17737,33031 2jmlA 81 50.83 2biiA 424 51.47 1n2aA 201 51.83 a.45.1.1,c.47.1.5 91553,91554 1sfxA 109 54.02 a.4.5.50 105505 2f5xA 312 55.84 2no4A 240 58.61 1e6yB 433 61.84 a.89.1.1,d.58.31.2 18535,39453 1k3yA 221 62.16 a.45.1.1,c.47.1.5 77245,77246 2qkbA 154 64.12 2ii0A 490 65.26 a.117.1.1 137425 2pvfA 334 65.41 2fuqA 747 65.67 1gvfA 286 65.85 c.1.10.2 70599 1s7oA 113 68.76 a.4.13.3 105354 1gwiA 411 72.98 a.104.1.1 76364 1ny1A 240 73.23 c.6.2.3 86395 2fiqA 420 74.21 c.1.10.7 133527 1jl1A 155 74.28 c.55.3.1 66821 1qqcA 773 74.62 c.55.3.5,e.8.1.1 33724,43013 3cbuA 214 74.84 1oqyA 368 75.15 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 3cblA 377 76.00 1m5yA 408 77.70 a.223.1.2,d.26.1.1,d.26.1.1 78664,78665,78666 1nhyA 219 78.58 a.45.1.1,c.47.1.5 80520,80521 1g8lA 411 78.66 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1zrnA 232 79.06 c.108.1.1 43323 2pvqA 201 82.02 1s1iG 119 82.15 i.1.1.1 105181 2z3tA 425 82.19 2qpqA 301 84.23 2ghaA 382 85.36 2vg2A 284 86.25 1pgtA 210 86.36 a.45.1.1,c.47.1.5 17515,32809 1f4qA 165 89.38 a.39.1.8 17360 1anfA 370 89.39 c.94.1.1 35776 1fnsA 196 89.81 c.62.1.1 34136