# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 2.38e-21 3bhqA 211 7.76e-21 3bcgA 215 8.08e-21 2zb9A 214 1.11e-20 3ccyA 203 1.29e-20 1vi0A 206 1.39e-20 a.4.1.9,a.121.1.1 100720,100721 2f07A 197 1.60e-20 2uxuA 210 1.96e-20 2ibdA 204 2.14e-20 2qtqA 213 2.18e-20 2hyjA 200 2.64e-20 2dg7A 195 2.68e-20 2id6A 202 2.76e-20 2rasA 212 2.92e-20 1rktA 205 3.06e-20 a.4.1.9,a.121.1.1 97623,97624 3c2bA 221 3.42e-20 2genA 197 4.22e-20 a.4.1.9,a.121.1.1 135062,135063 2iekA 200 4.23e-20 2g7sA 194 4.29e-20 a.4.1.9,a.121.1.1 134737,134738 3crjA 199 4.35e-20 3b81A 203 4.58e-20 2fq4A 192 4.97e-20 a.4.1.9,a.121.1.1 133937,133938 3cdlA 203 6.01e-20 1qvtA 194 6.82e-20 a.4.1.9,a.121.1.1 104602,104603 3bruA 222 8.93e-20 1zkgA 212 1.02e-19 a.4.1.9,a.121.1.1 125194,125195 1pb6A 212 1.43e-19 a.4.1.9,a.121.1.1 88017,88018 2raeA 207 1.68e-19 3cjdA 198 1.77e-19 1jt6A 188 1.84e-19 a.4.1.9,a.121.1.1 67247,67248 2hytA 197 1.97e-19 1z77A 200 2.42e-19 a.4.1.9,a.121.1.1 124588,124589 2of7A 260 2.68e-19 2jj7A 186 2.98e-19 3cwrA 208 3.73e-19 2qcoA 210 3.78e-19 2id3A 225 4.90e-19 a.4.1.9,a.121.1.1 137261,137262 1t56A 216 5.35e-19 a.4.1.9,a.121.1.1 106428,106429 2zcmA 192 5.52e-19 3colA 196 6.00e-19 2iaiA 230 7.02e-19 1ui5A 215 7.56e-19 a.4.1.9,a.121.1.1 107856,107857 2o7tA 199 7.96e-19 2qibA 231 8.28e-19 2fbqA 235 8.60e-19 a.4.1.9,a.121.1.1 133256,133257 2gfnA 209 9.65e-19 a.4.1.9,a.121.1.1 135101,135102 2iu5A 195 9.87e-19 2fx0A 201 1.02e-18 a.4.1.9,a.121.1.1 134269,134270 2nx4A 194 1.24e-18 1sgmA 191 1.92e-18 a.4.1.9,a.121.1.1 105537,105538 2q24A 194 2.87e-18 2vprA 207 2.93e-18 2i10A 202 2.99e-18 a.4.1.9,a.121.1.1 136960,136961 1zk8A 183 4.59e-18 a.4.1.9,a.121.1.1 125177,125178 3bniA 229 5.15e-18 2o7oA 207 6.39e-18 a.4.1.9,a.121.1.1 138930,138931 2d6yA 202 6.44e-18 a.4.1.9,a.121.1.1 131313,131314 1a6i 217 8.07e-18 2dg8A 193 9.92e-18 2g3bA 208 1.09e-17 a.4.1.9,a.121.1.1 134558,134559 2optA 234 1.28e-17 1t33A 224 1.70e-17 a.4.1.9,a.121.1.1 106295,106296 2oerA 214 2.33e-17 3bqyA 209 2.84e-17 3bjbA 207 2.94e-17 2qkoA 215 4.03e-17 2guhA 214 4.36e-17 2np5A 203 6.01e-17 a.4.1.9,a.121.1.1 138424,138425 2yveA 185 6.47e-17 2rekA 199 6.97e-17 2tct 207 7.80e-17 2g7gA 213 1.13e-16 a.4.1.9,a.121.1.1 134732,134733 2qwtA 196 1.15e-16 2oi8A 216 3.41e-16 1z0xA 220 3.63e-16 a.4.1.9,a.121.1.1 124334,124335 2eh3A 179 3.82e-16 2fd5A 180 3.83e-16 a.4.1.9,a.121.1.1 133291,133292 1v7bA 185 1.37e-15 a.4.1.9,a.121.1.1 119861,119862 2g7lA 243 3.58e-15 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 2.45e-14 2hkuA 215 3.04e-14 2jn6A 97 1.633 1hlvA 131 1.788 a.4.1.7,a.4.1.7 65854,65855 2hnlA 225 2.840 1on2A 142 4.539 a.4.5.24,a.76.1.1 87103,87104 1a0p 290 5.942 1m48A 133 6.048 a.26.1.2 74443 2pg4A 95 7.645 1r9oA 477 8.203 a.104.1.1 104878 1xcbA 211 8.827 a.4.5.38,c.2.1.12 109552,109553 3c6gA 479 8.996 2rn7A 108 9.271 1wdcC 156 9.915 a.39.1.5 17317 1j09A 468 10.10 a.97.1.1,c.26.1.1 77025,77026 1jlwA 219 10.13 a.45.1.1,c.47.1.5 71741,71742 2dt5A 211 10.30 a.4.5.38,c.2.1.12 131708,131709 2on5A 206 11.14 2dtr 226 13.84 1x1zA 252 14.09 c.1.2.3 121613 1cjgA 62 16.00 a.35.1.5 17112 2bjcA 62 19.66 a.35.1.5 128620 2rcyA 262 21.23 1lvaA 258 21.31 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1fseA 74 22.13 a.4.6.2 60000 1f21A 155 22.67 c.55.3.1 33550 2v9vA 135 23.46 1oe8A 211 24.66 a.45.1.1,c.47.1.5 86905,86906 2fnaA 357 26.37 a.4.5.11,c.37.1.20 133809,133810 1je8A 82 27.26 a.4.6.2 77108 2dvzA 314 27.77 1xo0A 324 28.40 a.60.9.1,d.163.1.1 115674,115675 2rfpA 171 29.25 2a2rA 210 29.88 a.45.1.1,c.47.1.5 126058,126059 1zljA 78 29.99 2r8wA 332 30.24 2ekcA 262 32.57 1sedA 117 34.21 a.219.1.1 105449 1a0fA 201 35.37 a.45.1.1,c.47.1.5 17737,33031 1m0uA 249 36.57 a.45.1.1,c.47.1.5 78359,78360 1ngkA 128 36.69 a.1.1.1 85673 2ntoA 201 37.11 1p4wA 99 37.56 a.4.6.2 87783 2ahrA 259 38.29 a.100.1.10,c.2.1.6 126775,126776 1ho8A 480 41.36 a.118.1.9 61107 2qkbA 154 42.94 1fw1A 216 44.66 a.45.1.1,c.47.1.5 60051,60052 1zd8A 227 44.95 2f5xA 312 45.46 1sfxA 109 45.63 a.4.5.50 105505 3bkbA 377 47.87 1nhyA 219 48.57 a.45.1.1,c.47.1.5 80520,80521 1f2eA 201 48.65 a.45.1.1,c.47.1.5 17745,33039 1n2aA 201 49.37 a.45.1.1,c.47.1.5 91553,91554 3bbyA 215 49.54 1hcrA 52 50.59 a.4.1.2 16020 1resA 43 52.95 a.4.1.2 16023 2q88A 257 53.22 2biiA 424 57.11 3inkC 133 57.15 a.26.1.2 16881 1tu7A 208 57.42 a.45.1.1,c.47.1.5 112653,112654 1anfA 370 57.93 c.94.1.1 35776 1m5yA 408 59.08 a.223.1.2,d.26.1.1,d.26.1.1 78664,78665,78666 2hiqA 113 59.30 d.58.4.12 136529 1ciyA 590 61.71 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 2cvdA 198 63.15 a.45.1.1,c.47.1.5 130861,130862 1zcbA 362 63.65 a.66.1.1,c.37.1.8 124901,124902 2qpqA 301 64.98 1ltqA 301 68.79 c.108.1.9,c.37.1.1 78208,78209 2no4A 240 69.37 2eb2A 334 70.08 2dtrA 226 74.42 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1xsvA 113 76.40 a.4.13.3 116003 1s1iG 119 77.43 i.1.1.1 105181 1w07A 659 77.44 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1s7oA 113 81.11 a.4.13.3 105354 2oezA 247 82.56 2o09A 189 82.89 1k3yA 221 82.96 a.45.1.1,c.47.1.5 77245,77246 1bl0A 129 83.36 a.4.1.8,a.4.1.8 16053,16054 1ny1A 240 84.97 c.6.2.3 86395 3d0cA 314 85.97 1g8lA 411 86.20 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2qguA 211 86.87 2gdrA 202 88.35 1aszB 490 89.24 b.40.4.1,d.104.1.1 25241,40762 3cblA 377 89.97