# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bcgA 215 2.02e-20 2pbxA 203 9.08e-20 2uxuA 210 1.26e-19 3bhqA 211 1.73e-19 2hyjA 200 2.65e-19 2f07A 197 2.96e-19 2zb9A 214 6.52e-19 1vi0A 206 8.04e-19 a.4.1.9,a.121.1.1 100720,100721 2dg7A 195 8.18e-19 3ccyA 203 9.06e-19 2rasA 212 1.20e-18 2fq4A 192 1.27e-18 a.4.1.9,a.121.1.1 133937,133938 2g7sA 194 1.32e-18 a.4.1.9,a.121.1.1 134737,134738 3b81A 203 1.60e-18 2id3A 225 1.62e-18 a.4.1.9,a.121.1.1 137261,137262 2id6A 202 1.99e-18 2genA 197 2.07e-18 a.4.1.9,a.121.1.1 135062,135063 2qtqA 213 2.13e-18 3crjA 199 2.35e-18 3cdlA 203 2.74e-18 1rktA 205 2.82e-18 a.4.1.9,a.121.1.1 97623,97624 3bruA 222 3.06e-18 2ibdA 204 3.26e-18 3c2bA 221 3.71e-18 1pb6A 212 4.02e-18 a.4.1.9,a.121.1.1 88017,88018 2of7A 260 4.28e-18 2hytA 197 5.34e-18 3colA 196 6.46e-18 2raeA 207 6.60e-18 2gfnA 209 8.62e-18 a.4.1.9,a.121.1.1 135101,135102 2qibA 231 9.67e-18 1t56A 216 1.02e-17 a.4.1.9,a.121.1.1 106428,106429 3cwrA 208 1.50e-17 2fbqA 235 1.82e-17 a.4.1.9,a.121.1.1 133256,133257 1sgmA 191 1.83e-17 a.4.1.9,a.121.1.1 105537,105538 2iekA 200 2.00e-17 1qvtA 194 2.05e-17 a.4.1.9,a.121.1.1 104602,104603 1ui5A 215 2.18e-17 a.4.1.9,a.121.1.1 107856,107857 1z77A 200 2.41e-17 a.4.1.9,a.121.1.1 124588,124589 2qcoA 210 2.52e-17 2jj7A 186 2.96e-17 3cjdA 198 3.22e-17 1zkgA 212 4.07e-17 a.4.1.9,a.121.1.1 125194,125195 2iaiA 230 4.34e-17 2o7tA 199 6.22e-17 2fx0A 201 6.51e-17 a.4.1.9,a.121.1.1 134269,134270 2nx4A 194 6.85e-17 1jt6A 188 8.11e-17 a.4.1.9,a.121.1.1 67247,67248 2q24A 194 1.02e-16 2i10A 202 2.06e-16 a.4.1.9,a.121.1.1 136960,136961 2zcmA 192 2.35e-16 2d6yA 202 2.64e-16 a.4.1.9,a.121.1.1 131313,131314 1a6i 217 2.94e-16 2o7oA 207 2.99e-16 a.4.1.9,a.121.1.1 138930,138931 2iu5A 195 3.25e-16 2np5A 203 4.62e-16 a.4.1.9,a.121.1.1 138424,138425 2dg8A 193 5.63e-16 2vprA 207 9.55e-16 2g3bA 208 1.04e-15 a.4.1.9,a.121.1.1 134558,134559 1zk8A 183 1.06e-15 a.4.1.9,a.121.1.1 125177,125178 2qwtA 196 1.11e-15 2oerA 214 1.22e-15 1t33A 224 1.38e-15 a.4.1.9,a.121.1.1 106295,106296 3bqyA 209 1.48e-15 2fd5A 180 1.59e-15 a.4.1.9,a.121.1.1 133291,133292 3bniA 229 1.84e-15 3bjbA 207 2.04e-15 2guhA 214 3.22e-15 2optA 234 7.02e-15 2qkoA 215 8.54e-15 2rekA 199 2.38e-14 2yveA 185 2.59e-14 2tct 207 2.82e-14 1z0xA 220 3.47e-14 a.4.1.9,a.121.1.1 124334,124335 2g7gA 213 3.59e-14 a.4.1.9,a.121.1.1 134732,134733 2oi8A 216 8.43e-14 2g7lA 243 2.46e-13 a.4.1.9,a.121.1.1 134734,134735 1v7bA 185 2.91e-13 a.4.1.9,a.121.1.1 119861,119862 2eh3A 179 2.95e-13 2hxoA 237 5.56e-13 2hkuA 215 2.15e-11 2imiA 221 4.166 2on5A 206 7.386 1u0mA 382 8.866 c.95.1.2,c.95.1.2 107557,107558 2hnlA 225 10.96 2gsoA 393 12.13 1ciyA 590 12.49 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 2pw6A 271 16.52 1tu7A 208 16.74 a.45.1.1,c.47.1.5 112653,112654 2qxlA 658 18.13 1ciy 590 18.38 3bbyA 215 19.59 1dmtA 696 22.09 d.92.1.4 40296 1v2aA 210 22.22 a.45.1.1,c.47.1.5 100263,100264 1f0cA 305 22.85 e.1.1.1 42676 1jlwA 219 23.18 a.45.1.1,c.47.1.5 71741,71742 3cbuA 214 23.90 2oxoA 103 25.63 1edg 380 26.28 1nhyA 219 27.20 a.45.1.1,c.47.1.5 80520,80521 1aw9A 216 27.84 a.45.1.1,c.47.1.5 17736,33030 1oe8A 211 30.40 a.45.1.1,c.47.1.5 86905,86906 1bupA 386 32.85 c.55.1.1,c.55.1.1 33377,33378 1lshA 1056 32.86 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 2ntoA 201 33.60 1oyjA 231 34.68 a.45.1.1,c.47.1.5 87597,87598 2d4pA 141 36.98 1ho8A 480 39.04 a.118.1.9 61107 1dlcA 584 41.41 b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 3c0bA 334 43.34 1cpt 412 45.05 2hlkA 255 45.11 2gsqA 202 47.36 a.45.1.1,c.47.1.5 17715,33009 1yrcA 414 48.26 a.104.1.1 123917 1n97A 389 50.63 a.104.1.1 80335 17gsA 210 53.35 a.45.1.1,c.47.1.5 17524,32818 1dz4A 414 57.34 a.104.1.1 18903 1uuqA 440 58.59 c.1.8.3 100015 1mqiA 263 59.33 c.94.1.1 91398 1n2aA 201 60.36 a.45.1.1,c.47.1.5 91553,91554 2pvqA 201 63.13 1qgjA 300 67.73 a.93.1.1 18691 2a2rA 210 69.38 a.45.1.1,c.47.1.5 126058,126059 1jlvA 209 71.94 a.45.1.1,c.47.1.5 71729,71730 1huxA 270 72.15 c.55.1.5 61278 1ex2A 189 74.65 c.51.4.2 33225 2aamA 309 74.81 c.1.8.15 126489 2scpA 174 75.00 a.39.1.5 17256 1i5pA 633 75.92 b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 2c3nA 247 76.03 1ytvA 366 76.82 c.94.1.1 124016 1svsA 353 78.41 c.37.1.8 106051 1qmqA 414 78.93 a.104.1.1 18907 1a4mA 349 79.80 c.1.9.1 29014 1vf1A 229 82.81 2cz2A 223 83.33 2d0bA 310 85.76 3bdzA 397 86.71 2gdrA 202 87.81 1pgtA 210 89.03 a.45.1.1,c.47.1.5 17515,32809