# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 1.56e-24 3bcgA 215 2.88e-24 3ccyA 203 9.21e-24 2f07A 197 1.46e-23 3bhqA 211 1.56e-23 2uxuA 210 2.11e-23 1vi0A 206 2.21e-23 a.4.1.9,a.121.1.1 100720,100721 2ibdA 204 2.56e-23 2rasA 212 3.02e-23 2g7sA 194 3.67e-23 a.4.1.9,a.121.1.1 134737,134738 2dg7A 195 3.84e-23 2hyjA 200 4.09e-23 2id6A 202 5.81e-23 2genA 197 5.86e-23 a.4.1.9,a.121.1.1 135062,135063 3crjA 199 7.02e-23 3cdlA 203 8.07e-23 3b81A 203 8.73e-23 2zb9A 214 1.17e-22 2qtqA 213 1.25e-22 1rktA 205 1.97e-22 a.4.1.9,a.121.1.1 97623,97624 3bruA 222 2.06e-22 2fq4A 192 2.40e-22 a.4.1.9,a.121.1.1 133937,133938 2raeA 207 2.63e-22 2iekA 200 2.88e-22 1pb6A 212 3.20e-22 a.4.1.9,a.121.1.1 88017,88018 2hytA 197 3.69e-22 3c2bA 221 4.04e-22 3cjdA 198 5.33e-22 1qvtA 194 5.34e-22 a.4.1.9,a.121.1.1 104602,104603 2of7A 260 8.77e-22 1z77A 200 9.56e-22 a.4.1.9,a.121.1.1 124588,124589 3colA 196 1.06e-21 1t56A 216 1.07e-21 a.4.1.9,a.121.1.1 106428,106429 2qcoA 210 1.23e-21 2jj7A 186 1.36e-21 2iaiA 230 1.82e-21 2id3A 225 1.97e-21 a.4.1.9,a.121.1.1 137261,137262 1jt6A 188 1.98e-21 a.4.1.9,a.121.1.1 67247,67248 2gfnA 209 1.99e-21 a.4.1.9,a.121.1.1 135101,135102 2nx4A 194 2.47e-21 1zkgA 212 2.73e-21 a.4.1.9,a.121.1.1 125194,125195 2qibA 231 3.03e-21 3cwrA 208 3.43e-21 2o7tA 199 4.67e-21 2zcmA 192 7.36e-21 2fbqA 235 7.97e-21 a.4.1.9,a.121.1.1 133256,133257 1sgmA 191 9.15e-21 a.4.1.9,a.121.1.1 105537,105538 1ui5A 215 1.41e-20 a.4.1.9,a.121.1.1 107856,107857 2q24A 194 1.79e-20 2fx0A 201 1.80e-20 a.4.1.9,a.121.1.1 134269,134270 2d6yA 202 1.92e-20 a.4.1.9,a.121.1.1 131313,131314 3bniA 229 3.21e-20 2iu5A 195 3.84e-20 2i10A 202 6.17e-20 a.4.1.9,a.121.1.1 136960,136961 2g3bA 208 1.04e-19 a.4.1.9,a.121.1.1 134558,134559 2o7oA 207 1.17e-19 a.4.1.9,a.121.1.1 138930,138931 1a6i 217 1.24e-19 1zk8A 183 1.29e-19 a.4.1.9,a.121.1.1 125177,125178 2np5A 203 1.34e-19 a.4.1.9,a.121.1.1 138424,138425 2dg8A 193 1.38e-19 2vprA 207 2.01e-19 1t33A 224 2.68e-19 a.4.1.9,a.121.1.1 106295,106296 2guhA 214 2.73e-19 2qkoA 215 3.24e-19 3bqyA 209 3.79e-19 2oerA 214 4.03e-19 2qwtA 196 4.81e-19 2yveA 185 8.53e-19 2fd5A 180 8.60e-19 a.4.1.9,a.121.1.1 133291,133292 2optA 234 8.92e-19 3bjbA 207 1.03e-18 2rekA 199 5.21e-18 2oi8A 216 7.96e-18 2tct 207 1.11e-17 2eh3A 179 1.12e-17 1z0xA 220 1.41e-17 a.4.1.9,a.121.1.1 124334,124335 1v7bA 185 2.11e-17 a.4.1.9,a.121.1.1 119861,119862 2g7gA 213 2.36e-17 a.4.1.9,a.121.1.1 134732,134733 2g7lA 243 1.23e-16 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 1.26e-15 2hkuA 215 6.33e-15 2pzzA 147 1.622 1a0p 290 8.799 1jlwA 219 9.916 a.45.1.1,c.47.1.5 71741,71742 2hnlA 225 13.06 1x1zA 252 13.85 c.1.2.3 121613 2jn6A 97 14.14 1r9oA 477 17.05 a.104.1.1 104878 1on2A 142 18.39 a.4.5.24,a.76.1.1 87103,87104 2on5A 206 18.74 2v9vA 135 19.20 1hlvA 131 24.09 a.4.1.7,a.4.1.7 65854,65855 1dlcA 584 24.69 b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 1w99A 558 24.80 2e9xD 223 36.01 1vs5C 233 37.20 2v9dA 343 37.88 1tu7A 208 39.09 a.45.1.1,c.47.1.5 112653,112654 1ltqA 301 39.42 c.108.1.9,c.37.1.1 78208,78209 2oxoA 103 40.80 2dtr 226 43.15 3c9gA 142 45.71 3bbyA 215 47.51 1oqyA 368 48.86 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1oe8A 211 49.32 a.45.1.1,c.47.1.5 86905,86906 1wdcC 156 52.47 a.39.1.5 17317 2gsqA 202 52.68 a.45.1.1,c.47.1.5 17715,33009 2pg4A 95 52.83 2qkbA 154 54.07 2rn7A 108 54.13 1ex2A 189 57.18 c.51.4.2 33225 1xo0A 324 57.58 a.60.9.1,d.163.1.1 115674,115675 1eupA 403 57.66 a.104.1.1 18967 1tn6B 437 58.32 a.102.4.3 112528 1mqiA 263 58.36 c.94.1.1 91398 2d4pA 141 58.39 2fuqA 747 58.64 1nhyA 219 58.89 a.45.1.1,c.47.1.5 80520,80521 1f44A 324 59.09 a.60.9.1,d.163.1.1 64982,64983 1h3fA 432 59.43 c.26.1.1,d.66.1.4 76631,76632 2qalC 232 64.24 1ciyA 590 65.64 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1pnsC 206 65.68 i.1.1.1 88170 1bxeA 113 66.43 d.55.1.1 38898 2a2rA 210 67.19 a.45.1.1,c.47.1.5 126058,126059 1sjyA 159 67.53 d.113.1.1 98900 2bvwA 362 68.67 c.6.1.1 30666 3cox 507 68.84 1yn9A 169 70.31 1zd8A 227 71.17 2hldG 278 71.82 2nuwA 288 72.59 2uxqA 402 73.16 2or2A 296 74.43 1p4xA 250 78.27 a.4.5.28,a.4.5.28 87784,87785 2cstA 411 78.36 c.67.1.1 34273 1hw5A 210 78.88 a.4.5.4,b.82.3.2 16098,28137 3d0cA 314 80.37 1y10A 407 81.08 2r8wA 332 83.74 3ci3A 194 84.46 3c6gA 479 86.37 2dr1A 386 86.63 1svsA 353 87.76 c.37.1.8 106051 1ho8A 480 88.60 a.118.1.9 61107 2ehhA 294 88.62