# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1pb6A 212 1.50e-14 a.4.1.9,a.121.1.1 88017,88018 3bcgA 215 2.03e-14 1vi0A 206 2.78e-14 a.4.1.9,a.121.1.1 100720,100721 3bruA 222 6.38e-14 2uxuA 210 1.23e-13 3cdlA 203 2.14e-13 2hytA 197 4.46e-13 2g7sA 194 7.19e-13 a.4.1.9,a.121.1.1 134737,134738 2f07A 197 8.57e-13 2jj7A 186 1.59e-12 3bhqA 211 1.96e-12 2fx0A 201 2.18e-12 a.4.1.9,a.121.1.1 134269,134270 2ibdA 204 2.44e-12 2g3bA 208 2.87e-12 a.4.1.9,a.121.1.1 134558,134559 2pbxA 203 3.05e-12 2iaiA 230 3.57e-12 1z77A 200 3.72e-12 a.4.1.9,a.121.1.1 124588,124589 2id6A 202 3.73e-12 2i10A 202 3.76e-12 a.4.1.9,a.121.1.1 136960,136961 1zkgA 212 4.21e-12 a.4.1.9,a.121.1.1 125194,125195 2genA 197 5.36e-12 a.4.1.9,a.121.1.1 135062,135063 2iekA 200 6.05e-12 1rktA 205 6.38e-12 a.4.1.9,a.121.1.1 97623,97624 2hyjA 200 7.64e-12 3crjA 199 1.09e-11 2gfnA 209 1.62e-11 a.4.1.9,a.121.1.1 135101,135102 2eh3A 179 2.07e-11 1jt6A 188 3.09e-11 a.4.1.9,a.121.1.1 67247,67248 2qwtA 196 3.13e-11 1ui5A 215 3.14e-11 a.4.1.9,a.121.1.1 107856,107857 1qvtA 194 3.28e-11 a.4.1.9,a.121.1.1 104602,104603 1t56A 216 3.55e-11 a.4.1.9,a.121.1.1 106428,106429 3ccyA 203 4.18e-11 2qibA 231 5.45e-11 2d6yA 202 7.00e-11 a.4.1.9,a.121.1.1 131313,131314 2fbqA 235 7.27e-11 a.4.1.9,a.121.1.1 133256,133257 1sgmA 191 7.30e-11 a.4.1.9,a.121.1.1 105537,105538 2qtqA 213 9.32e-11 2raeA 207 1.02e-10 2nx4A 194 1.28e-10 2q24A 194 1.58e-10 2qcoA 210 1.63e-10 2of7A 260 2.21e-10 2fd5A 180 3.74e-10 a.4.1.9,a.121.1.1 133291,133292 3cjdA 198 4.29e-10 2fq4A 192 4.42e-10 a.4.1.9,a.121.1.1 133937,133938 2rekA 199 9.09e-10 2guhA 214 1.03e-09 2id3A 225 1.09e-09 a.4.1.9,a.121.1.1 137261,137262 2np5A 203 1.29e-09 a.4.1.9,a.121.1.1 138424,138425 3bniA 229 2.00e-09 2dg8A 193 2.48e-09 2oi8A 216 2.61e-09 3c2bA 221 2.68e-09 2rasA 212 2.73e-09 2zcmA 192 2.90e-09 3bjbA 207 2.90e-09 3b81A 203 4.14e-09 2zb9A 214 4.97e-09 1t33A 224 7.34e-09 a.4.1.9,a.121.1.1 106295,106296 3colA 196 9.91e-09 2oerA 214 1.51e-08 3cwrA 208 2.12e-08 1v7bA 185 2.13e-08 a.4.1.9,a.121.1.1 119861,119862 2yveA 185 2.95e-08 2hkuA 215 4.85e-08 1zk8A 183 4.87e-08 a.4.1.9,a.121.1.1 125177,125178 2dg7A 195 6.47e-08 2o7oA 207 8.06e-08 a.4.1.9,a.121.1.1 138930,138931 2tct 207 9.08e-08 2tct 3bqyA 209 1.11e-07 2o7tA 199 1.36e-07 1a6i 217 1.79e-07 2tct 2vprA 207 2.44e-07 1z0xA 220 3.01e-07 a.4.1.9,a.121.1.1 124334,124335 2hxoA 237 1.58e-06 2g7lA 243 1.76e-06 a.4.1.9,a.121.1.1 134734,134735 2qkoA 215 1.94e-06 2optA 234 6.14e-06 2g7gA 213 2.55e-05 a.4.1.9,a.121.1.1 134732,134733 2iu5A 195 3.97e-05 2douA 376 1.17e+00 1pufB 73 4.00e+00 a.4.1.1 95132 1du6A 64 5.11e+00 1akhA a.4.1.1 16002 1b72B 87 5.12e+00 1akhA a.4.1.1 16001 1b8iB 63 5.65e+00 1akhA a.4.1.1 16011 2pg4A 95 5.92e+00 3c1mA 473 6.27e+00 1sh5A 245 7.69e+00 a.40.1.1,a.40.1.1 105543,105544 7aatA 401 7.91e+00 1ajsA c.67.1.1 34250 2qulA 290 8.94e+00 2ivnA 330 9.20e+00 1ulyA 192 9.28e+00 a.4.5.58 113297 1jmeA 455 9.73e+00 a.104.1.1 66885 1akaA 401 9.74e+00 1ajsA c.67.1.1 34258 2fr7A 412 9.93e+00 1uuqA 440 1.04e+01 c.1.8.3 100015 1wc3A 219 1.15e+01 d.58.29.1 114495 1b5l 172 1.16e+01 1b5l 1b5lA 172 1.16e+01 a.26.1.3 16900 1g0uE 234 1.17e+01 d.153.1.4 41950 1uwsA 489 1.19e+01 c.1.8.4 108073 1odoA 408 1.23e+01 a.104.1.1 92783 1rypF 233 1.24e+01 1rypF d.153.1.4 41937 1he2A 206 1.43e+01 1he2A c.2.1.2 60966 2eueA 279 1.53e+01 1gwcA 230 1.54e+01 a.45.1.1,c.47.1.5 70660,70661 2q8uA 336 1.54e+01 2bjcA 62 1.58e+01 a.35.1.5 128620 1hdoA 206 1.63e+01 1he2A c.2.1.2 60965 1eyeA 280 1.71e+01 1aj2 c.1.21.1 29672 1b0nA 111 1.74e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 2q0zX 339 1.74e+01 1tz9A 367 1.82e+01 c.1.15.6 107466 2imhA 231 1.83e+01 2qxlA 658 1.87e+01 2i2xB 258 1.89e+01 1a0cA 438 2.01e+01 1a0cA c.1.15.3 29529 1gowA 489 2.04e+01 1qvbA c.1.8.4 28981 2gu2A 312 2.16e+01 1bgpA 309 2.18e+01 a.93.1.1 18690 1pbgA 468 2.19e+01 1e70M c.1.8.4 28946 1o5xA 248 2.20e+01 c.1.1.1 92528 2ex5A 207 2.21e+01 1j8mF 297 2.27e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1nksA 194 2.29e+01 1nksA c.37.1.1 31886 1wpoA 256 2.42e+01 1lay b.57.1.1 27012 2oxoA 103 2.47e+01 2depA 356 2.56e+01 2q4zA 312 2.58e+01 2yx6A 121 2.62e+01 1pveA 72 2.64e+01 a.189.1.1 104322 2ax4A 198 2.64e+01 1bupA 386 2.66e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1a0eA 443 2.73e+01 1a0cA c.1.15.3 29537 1j1qA 261 2.89e+01 d.165.1.1 90768 1jjfA 268 2.98e+01 c.69.1.2 66765 1vbuA 328 3.01e+01 c.1.8.3 119963 1a0dA 440 3.02e+01 1a0cA c.1.15.3 29533 2o9pA 454 3.12e+01 1ka2A 499 3.12e+01 d.92.1.5 77305 1q1vA 70 3.17e+01 a.159.4.1 104479 1ba1 386 3.18e+01 1ba1 1kay 381 3.21e+01 1ba1 3bqpA 80 3.22e+01 256bA 106 3.34e+01 256bA a.24.3.1 16539 1jf0A 195 3.36e+01 1ej3A a.39.1.5 62926 1zthA 258 3.42e+01 1w63A 618 3.51e+01 i.23.1.1 109192 2ij2A 470 3.59e+01 a.104.1.1 137449 2og1A 286 3.60e+01 1n57A 291 3.60e+01 c.23.16.2 85328 2jt1A 77 3.61e+01 1vjzA 341 3.64e+01 c.1.8.3 100838 1s7oA 113 3.65e+01 a.4.13.3 105354 1e6bA 221 3.71e+01 1e6bA a.45.1.1,c.47.1.5 59294,59295 1j8yF 297 3.73e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 1z8oA 404 3.74e+01 a.104.1.1 124722 1bu7A 455 3.76e+01 1bu7A a.104.1.1 18937 1fj2A 232 3.77e+01 1auoA c.69.1.14 34720 3fruA 269 3.80e+01 1agdA b.1.1.2,d.19.1.1 20657,38150 1zo4A 473 3.86e+01 3b7hA 78 3.91e+01 1wb4A 297 3.91e+01 c.69.1.2 120827 1y1uA 585 3.96e+01 2puhA 286 3.98e+01 2ikqA 270 3.98e+01 2iqhA 499 3.99e+01 2pujA 286 4.14e+01 1ux8A 132 4.19e+01 a.1.1.1 113449 1x9fB 145 4.25e+01 a.1.1.2 114984 1pdnC 128 4.26e+01 6paxA a.4.1.5 16047 1xyfA 436 4.28e+01 1taxA b.42.2.1,c.1.8.3 25577,28909 1x7oA 287 4.30e+01 2yzrA 330 4.30e+01 1jkoC 52 4.32e+01 a.4.1.2 66809 1bg4A 302 4.35e+01 c.1.8.3 28806 1qjwA 365 4.36e+01 1bvwA c.6.1.1 30657 1j5pA 253 4.42e+01 d.81.1.3,c.2.1.3 71577,83092 1jipA 403 4.43e+01 a.104.1.1 66748 1gkkA 297 4.49e+01 c.69.1.2 65248 2avnA 260 4.64e+01 c.66.1.41 127380 1t9mA 214 4.65e+01 b.45.1.1 112364 1m6jA 261 4.67e+01 c.1.1.1 78693 2a2jA 246 4.70e+01 b.45.1.1 126033 1s7zA 117 4.73e+01 a.159.3.1 98715 1qvbA 481 4.76e+01 1qvbA c.1.8.4 28983 7a3hA 303 4.77e+01 7a3hA c.1.8.3 28817 2p61A 162 4.81e+01 1mhyD 521 4.83e+01 1mhyD a.25.1.2 16780 2ev1A 222 4.84e+01 1hu3A 260 4.86e+01 1hu3A a.118.1.14 19137 2g2bA 150 5.03e+01 1ltlA 279 5.06e+01 b.40.4.11 84701 2h0qA 261 5.08e+01 2d4pA 141 5.10e+01 1cjgA 62 5.12e+01 1pru a.35.1.5 17112 2rhwA 283 5.15e+01 1lccA 51 5.17e+01 1pru a.35.1.5 17110 1xqiA 195 5.22e+01 d.58.6.1 122237 1xg2B 153 5.25e+01 1hcrA 52 5.26e+01 1hcrA a.4.1.2 16020 1wc1A 226 5.32e+01 d.58.29.1 114492 2d2mD 145 5.40e+01 1auoA 218 5.46e+01 1auoA c.69.1.14 34716 1zeeA 403 5.47e+01 a.266.1.2 124981 2h7bA 105 5.53e+01 1djxB 624 5.57e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17343,23160,29588 1yuwA 554 5.73e+01 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 1yhuB 144 5.78e+01 1g59A 468 5.79e+01 a.97.1.1,c.26.1.1 60257,60258 1ty9A 222 5.89e+01 b.45.1.1 112827 1ho8A 480 5.89e+01 1ho8A a.118.1.9 61107 2gsoA 393 5.91e+01 1y60A 169 5.95e+01 d.14.1.12 116489 1oqyA 368 5.96e+01 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 2zfoA 140 6.05e+01 1egzA 291 6.07e+01 7a3hA c.1.8.3 28828 1aiaA 396 6.11e+01 1ajsA c.67.1.1 34306 1a8e 329 6.14e+01 1cb6A 2oikA 154 6.14e+01 2nwbA 400 6.21e+01 2grcA 129 6.23e+01 2plc 274 6.27e+01 2plc 2plcA 274 6.27e+01 c.1.18.2 29614 1f81A 88 6.31e+01 1f81A g.53.1.1 45383 2dc5A 231 6.31e+01 1vmaA 306 6.36e+01 a.24.13.1,c.37.1.10 108887,108888 1vg0A 650 6.44e+01 c.3.1.3,d.16.1.6 108596,108597 2d2mA 140 6.56e+01 1tqhA 247 6.75e+01 c.69.1.29 107225 2gzsA 278 6.75e+01 2czlA 272 6.81e+01 c.94.1.1 131055 1jfbA 404 6.82e+01 a.104.1.1 66624 1a5zA 319 6.90e+01 c.2.1.5,d.162.1.1 30181,42148 3xis 387 7.00e+01 4xis 1gln 468 7.06e+01 1gln 1gnxA 479 7.07e+01 c.1.8.4 76241 2fji1 399 7.13e+01 2gwmA 200 7.14e+01 1nbuA 119 7.16e+01 d.96.1.3 91767 2qs8A 418 7.23e+01 2q01A 497 7.23e+01 1oj5A 132 7.28e+01 d.110.3.8 93087 1cfzA 162 7.40e+01 1cfzA c.56.1.1 33754 1pz1A 333 7.44e+01 c.1.7.1 95390 2pu9C 111 7.58e+01 3ci6A 171 7.63e+01 2q18X 293 7.65e+01 1kgnA 329 7.68e+01 a.25.1.2 68584 1fc3A 120 7.71e+01 1fc3A a.4.6.3 16237 1umdA 367 7.71e+01 c.36.1.11 99599 1h5vA 304 7.78e+01 c.1.8.3 70898 1cmnA 402 7.83e+01 1rom a.104.1.1 18958 2e9lA 469 7.83e+01 1n82A 331 7.86e+01 c.1.8.3 91703 1h97A 147 7.91e+01 1h97A a.1.1.2 60812 1ariA 396 7.93e+01 1ajsA c.67.1.1 34331 1vdeA 454 7.93e+01 1vdeA b.86.1.2,d.95.2.2,d.95.2.2 28378,40581,40582 1ae7A 119 7.94e+01 a.133.1.2 19553