# TARGET T0454 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0454.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 2180 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.002 0.002 0.001 0.003 0.059 0.932 2 T 0.003 0.006 0.001 0.029 0.061 0.899 3 R 0.001 0.002 0.016 0.717 0.052 0.212 4 A 0.001 0.001 0.011 0.961 0.016 0.012 5 D 0.001 0.001 0.011 0.976 0.009 0.004 6 C 0.001 0.001 0.004 0.987 0.003 0.005 7 R 0.001 0.001 0.001 0.999 0.001 0.001 8 S 0.001 0.001 0.001 0.999 0.001 0.001 9 R 0.001 0.001 0.001 0.999 0.001 0.001 10 L 0.001 0.001 0.001 0.999 0.001 0.001 11 M 0.001 0.001 0.001 0.999 0.001 0.001 12 E 0.001 0.001 0.001 0.999 0.001 0.001 13 V 0.001 0.001 0.001 0.999 0.001 0.001 14 A 0.001 0.001 0.001 0.999 0.001 0.001 15 T 0.001 0.001 0.001 0.999 0.001 0.001 16 E 0.001 0.001 0.001 0.999 0.001 0.001 17 L 0.001 0.001 0.001 0.999 0.001 0.001 18 F 0.001 0.001 0.001 0.997 0.001 0.001 19 A 0.001 0.001 0.005 0.991 0.003 0.001 20 Q 0.001 0.001 0.004 0.987 0.007 0.002 21 K 0.001 0.001 0.006 0.907 0.026 0.061 22 G 0.001 0.002 0.003 0.044 0.083 0.867 23 F 0.015 0.020 0.079 0.068 0.568 0.251 24 Y 0.075 0.006 0.087 0.048 0.631 0.153 25 G 0.163 0.010 0.119 0.052 0.468 0.189 26 V 0.337 0.050 0.013 0.033 0.248 0.319 27 S 0.211 0.025 0.004 0.043 0.030 0.687 28 I 0.009 0.001 0.008 0.972 0.002 0.009 29 R 0.004 0.001 0.004 0.987 0.002 0.003 30 E 0.001 0.001 0.002 0.995 0.001 0.001 31 L 0.001 0.001 0.002 0.996 0.001 0.001 32 A 0.001 0.001 0.002 0.996 0.002 0.001 33 Q 0.001 0.001 0.004 0.988 0.005 0.003 34 A 0.001 0.001 0.005 0.972 0.010 0.012 35 A 0.001 0.001 0.005 0.906 0.021 0.066 36 G 0.001 0.001 0.001 0.011 0.040 0.947 37 A 0.003 0.006 0.002 0.006 0.052 0.931 38 S 0.010 0.005 0.002 0.008 0.039 0.936 39 I 0.016 0.003 0.046 0.768 0.049 0.118 40 S 0.043 0.003 0.033 0.778 0.068 0.074 41 M 0.070 0.002 0.039 0.830 0.040 0.018 42 I 0.068 0.001 0.017 0.889 0.017 0.008 43 S 0.033 0.001 0.016 0.934 0.014 0.004 44 Y 0.054 0.001 0.013 0.904 0.021 0.007 45 H 0.060 0.003 0.011 0.841 0.040 0.044 46 F 0.036 0.012 0.018 0.276 0.237 0.420 47 G 0.013 0.012 0.023 0.132 0.353 0.466 48 G 0.007 0.006 0.008 0.057 0.213 0.710 49 K 0.001 0.001 0.016 0.970 0.010 0.004 50 E 0.001 0.001 0.007 0.988 0.004 0.001 51 G 0.001 0.001 0.005 0.992 0.002 0.001 52 L 0.001 0.001 0.003 0.995 0.001 0.001 53 Y 0.001 0.001 0.001 0.998 0.001 0.001 54 A 0.001 0.001 0.001 0.998 0.001 0.001 55 A 0.001 0.001 0.001 0.997 0.001 0.001 56 V 0.001 0.001 0.002 0.996 0.001 0.001 57 L 0.001 0.001 0.004 0.993 0.002 0.001 58 Q 0.001 0.001 0.004 0.992 0.002 0.001 59 E 0.001 0.001 0.004 0.990 0.003 0.003 60 Q 0.001 0.001 0.005 0.973 0.006 0.015 61 F 0.001 0.001 0.017 0.945 0.019 0.017 62 A 0.001 0.001 0.026 0.920 0.030 0.022 63 C 0.002 0.001 0.029 0.847 0.051 0.069 64 F 0.004 0.003 0.050 0.632 0.122 0.189 65 G 0.008 0.004 0.064 0.299 0.220 0.404 66 Q 0.016 0.009 0.116 0.359 0.236 0.264 67 L 0.009 0.005 0.189 0.548 0.146 0.103 68 D 0.008 0.004 0.194 0.562 0.140 0.092 69 D 0.005 0.002 0.253 0.540 0.142 0.059 70 I 0.009 0.008 0.161 0.508 0.186 0.127 71 R 0.008 0.008 0.106 0.521 0.190 0.168 72 G 0.009 0.009 0.094 0.257 0.303 0.328 73 Q 0.007 0.009 0.045 0.183 0.409 0.348 74 A 0.009 0.014 0.023 0.092 0.342 0.519 75 G 0.006 0.012 0.003 0.023 0.243 0.712 76 D 0.003 0.005 0.001 0.018 0.107 0.866 77 P 0.001 0.001 0.003 0.965 0.010 0.021 78 L 0.001 0.001 0.001 0.996 0.002 0.001 79 A 0.001 0.001 0.001 0.998 0.001 0.001 80 V 0.001 0.001 0.001 0.998 0.001 0.001 81 M 0.001 0.001 0.001 0.999 0.001 0.001 82 T 0.001 0.001 0.001 0.999 0.001 0.001 83 A 0.001 0.001 0.001 0.999 0.001 0.001 84 Y 0.001 0.001 0.001 0.999 0.001 0.001 85 L 0.001 0.001 0.001 0.999 0.001 0.001 86 R 0.001 0.001 0.001 0.998 0.001 0.001 87 W 0.001 0.001 0.001 0.998 0.001 0.001 88 T 0.001 0.001 0.001 0.996 0.001 0.002 89 I 0.001 0.001 0.002 0.996 0.001 0.001 90 Q 0.001 0.001 0.003 0.995 0.001 0.001 91 R 0.001 0.001 0.003 0.991 0.002 0.003 92 H 0.001 0.001 0.007 0.967 0.014 0.011 93 R 0.001 0.001 0.010 0.917 0.048 0.023 94 N 0.001 0.001 0.007 0.872 0.054 0.065 95 N 0.001 0.003 0.006 0.213 0.182 0.594 96 P 0.001 0.001 0.017 0.931 0.024 0.027 97 Q 0.001 0.001 0.014 0.958 0.017 0.009 98 L 0.001 0.001 0.005 0.991 0.003 0.001 99 L 0.001 0.001 0.002 0.996 0.001 0.001 100 R 0.002 0.001 0.002 0.993 0.002 0.001 101 F 0.004 0.001 0.003 0.989 0.003 0.001 102 Y 0.003 0.001 0.002 0.992 0.002 0.001 103 T 0.002 0.001 0.004 0.988 0.003 0.003 104 S 0.002 0.001 0.009 0.981 0.005 0.003 105 E 0.002 0.001 0.009 0.973 0.007 0.008 106 L 0.003 0.003 0.017 0.876 0.037 0.064 107 T 0.005 0.007 0.022 0.578 0.118 0.271 108 N 0.003 0.005 0.010 0.133 0.223 0.627 109 P 0.001 0.002 0.004 0.038 0.160 0.795 110 T 0.001 0.003 0.003 0.040 0.128 0.825 111 P 0.001 0.002 0.048 0.793 0.098 0.058 112 C 0.002 0.002 0.055 0.830 0.074 0.036 113 F 0.002 0.002 0.048 0.898 0.035 0.015 114 A 0.007 0.001 0.046 0.901 0.026 0.019 115 A 0.007 0.001 0.048 0.889 0.033 0.022 116 I 0.008 0.002 0.028 0.896 0.033 0.034 117 V 0.005 0.002 0.006 0.932 0.018 0.037 118 S 0.002 0.001 0.005 0.940 0.014 0.038 119 P 0.001 0.001 0.007 0.973 0.008 0.010 120 A 0.001 0.001 0.009 0.967 0.010 0.013 121 I 0.001 0.001 0.002 0.992 0.002 0.003 122 A 0.001 0.001 0.001 0.998 0.001 0.001 123 S 0.001 0.001 0.001 0.997 0.001 0.001 124 V 0.001 0.001 0.001 0.998 0.001 0.001 125 I 0.001 0.001 0.001 0.999 0.001 0.001 126 R 0.001 0.001 0.001 0.999 0.001 0.001 127 L 0.001 0.001 0.001 0.997 0.001 0.001 128 L 0.001 0.001 0.001 0.997 0.001 0.002 129 A 0.001 0.001 0.001 0.998 0.001 0.001 130 E 0.001 0.001 0.001 0.999 0.001 0.001 131 S 0.001 0.001 0.001 0.999 0.001 0.001 132 I 0.001 0.001 0.001 0.999 0.001 0.001 133 E 0.001 0.001 0.001 0.999 0.001 0.001 134 A 0.001 0.001 0.001 0.998 0.001 0.001 135 G 0.001 0.001 0.002 0.990 0.004 0.004 136 M 0.001 0.001 0.011 0.973 0.013 0.002 137 T 0.001 0.001 0.007 0.980 0.010 0.002 138 R 0.001 0.001 0.005 0.968 0.011 0.016 139 G 0.003 0.002 0.006 0.105 0.089 0.795 140 L 0.029 0.019 0.014 0.027 0.139 0.772 141 F 0.129 0.072 0.025 0.036 0.229 0.510 142 R 0.097 0.032 0.035 0.029 0.450 0.357 143 R 0.036 0.007 0.062 0.053 0.562 0.281 144 D 0.026 0.009 0.095 0.056 0.531 0.283 145 L 0.036 0.059 0.029 0.104 0.399 0.373 146 H 0.013 0.014 0.003 0.087 0.087 0.796 147 A 0.001 0.001 0.002 0.991 0.002 0.005 148 V 0.001 0.001 0.001 0.998 0.001 0.001 149 N 0.001 0.001 0.001 0.999 0.001 0.001 150 S 0.001 0.001 0.001 0.999 0.001 0.001 151 A 0.001 0.001 0.001 0.999 0.001 0.001 152 L 0.001 0.001 0.001 0.999 0.001 0.001 153 A 0.001 0.001 0.001 0.999 0.001 0.001 154 L 0.001 0.001 0.001 0.999 0.001 0.001 155 A 0.001 0.001 0.001 0.999 0.001 0.001 156 G 0.001 0.001 0.002 0.998 0.001 0.001 157 M 0.001 0.001 0.003 0.995 0.001 0.001 158 V 0.001 0.001 0.004 0.993 0.001 0.001 159 N 0.001 0.001 0.005 0.989 0.002 0.003 160 Y 0.002 0.001 0.008 0.980 0.003 0.006 161 F 0.005 0.001 0.011 0.962 0.008 0.013 162 F 0.020 0.003 0.020 0.901 0.024 0.032 163 L 0.039 0.005 0.015 0.836 0.046 0.059 164 S 0.052 0.004 0.021 0.646 0.095 0.183 165 T 0.019 0.002 0.050 0.752 0.102 0.075 166 L 0.055 0.008 0.085 0.599 0.177 0.077 167 A 0.091 0.012 0.069 0.607 0.144 0.076 168 T 0.067 0.007 0.068 0.671 0.115 0.072 169 E 0.042 0.005 0.071 0.616 0.140 0.126 170 G 0.070 0.009 0.084 0.316 0.220 0.301 171 L 0.088 0.037 0.068 0.211 0.269 0.328 172 T 0.105 0.059 0.056 0.116 0.332 0.333 173 S 0.044 0.024 0.034 0.060 0.457 0.381 174 H 0.019 0.018 0.018 0.021 0.448 0.477 175 S 0.007 0.009 0.005 0.006 0.525 0.447 176 P 0.003 0.008 0.109 0.092 0.530 0.257 177 D 0.004 0.013 0.061 0.095 0.538 0.290 178 Q 0.004 0.009 0.054 0.276 0.380 0.277 179 D 0.001 0.001 0.010 0.954 0.014 0.021 180 E 0.001 0.001 0.002 0.994 0.002 0.001 181 E 0.001 0.001 0.002 0.997 0.001 0.001 182 L 0.001 0.001 0.002 0.997 0.001 0.001 183 I 0.001 0.001 0.001 0.999 0.001 0.001 184 R 0.001 0.001 0.001 0.999 0.001 0.001 185 Q 0.001 0.001 0.001 0.999 0.001 0.001 186 Y 0.001 0.001 0.001 0.999 0.001 0.001 187 V 0.001 0.001 0.001 0.999 0.001 0.001 188 A 0.001 0.001 0.001 0.999 0.001 0.001 189 I 0.001 0.001 0.001 0.997 0.001 0.001 190 F 0.001 0.001 0.002 0.995 0.002 0.001 191 T 0.001 0.001 0.007 0.988 0.003 0.001 192 R 0.001 0.001 0.009 0.983 0.004 0.004 193 G 0.005 0.001 0.029 0.814 0.026 0.126 194 I 0.025 0.019 0.048 0.648 0.073 0.186 195 M 0.080 0.021 0.041 0.440 0.173 0.244 196 A 0.075 0.016 0.034 0.235 0.286 0.354 197 D 0.045 0.017 0.029 0.109 0.401 0.398 198 G 0.022 0.017 0.044 0.135 0.453 0.329 199 G 0.023 0.016 0.041 0.055 0.421 0.444 200 A 0.048 0.044 0.024 0.026 0.262 0.596 201 A 0.020 0.025 0.007 0.016 0.113 0.819 202 P 0.008 0.009 0.001 0.004 0.045 0.934 203 A 0.002 0.001 0.001 0.001 0.014 0.982