# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vi0A 206 5.89e-13 a.4.1.9,a.121.1.1 100720,100721 1pb6A 212 9.42e-13 a.4.1.9,a.121.1.1 88017,88018 3bcgA 215 3.60e-12 3bhqA 211 5.89e-12 3cdlA 203 8.08e-12 2uxuA 210 1.40e-11 3bruA 222 2.24e-11 2ibdA 204 2.52e-11 2f07A 197 7.03e-11 2fx0A 201 9.78e-11 a.4.1.9,a.121.1.1 134269,134270 2jj7A 186 1.13e-10 2hytA 197 2.04e-10 2pbxA 203 2.35e-10 2g7sA 194 6.01e-10 a.4.1.9,a.121.1.1 134737,134738 1z77A 200 7.22e-10 a.4.1.9,a.121.1.1 124588,124589 3ccyA 203 7.61e-10 2id6A 202 7.84e-10 1zkgA 212 8.56e-10 a.4.1.9,a.121.1.1 125194,125195 2iaiA 230 8.58e-10 2genA 197 1.09e-09 a.4.1.9,a.121.1.1 135062,135063 2iekA 200 1.40e-09 2hyjA 200 3.21e-09 1rktA 205 3.99e-09 a.4.1.9,a.121.1.1 97623,97624 2gfnA 209 5.52e-09 a.4.1.9,a.121.1.1 135101,135102 2d6yA 202 5.98e-09 a.4.1.9,a.121.1.1 131313,131314 2g3bA 208 7.25e-09 a.4.1.9,a.121.1.1 134558,134559 2qibA 231 1.13e-08 1ui5A 215 1.22e-08 a.4.1.9,a.121.1.1 107856,107857 3crjA 199 1.30e-08 2qtqA 213 1.47e-08 1qvtA 194 1.68e-08 a.4.1.9,a.121.1.1 104602,104603 1jt6A 188 1.97e-08 a.4.1.9,a.121.1.1 67247,67248 2fq4A 192 2.04e-08 a.4.1.9,a.121.1.1 133937,133938 2id3A 225 2.05e-08 a.4.1.9,a.121.1.1 137261,137262 2qwtA 196 2.10e-08 2nx4A 194 2.37e-08 2eh3A 179 3.42e-08 2fbqA 235 3.53e-08 a.4.1.9,a.121.1.1 133256,133257 1sgmA 191 4.65e-08 a.4.1.9,a.121.1.1 105537,105538 2q24A 194 8.47e-08 3colA 196 1.40e-07 1t56A 216 1.59e-07 a.4.1.9,a.121.1.1 106428,106429 2i10A 202 1.80e-07 a.4.1.9,a.121.1.1 136960,136961 3b81A 203 1.91e-07 2of7A 260 2.32e-07 2qcoA 210 2.57e-07 3c2bA 221 3.32e-07 2raeA 207 3.75e-07 2fd5A 180 5.25e-07 a.4.1.9,a.121.1.1 133291,133292 2zcmA 192 6.15e-07 2rasA 212 7.83e-07 3bjbA 207 9.99e-07 1t33A 224 1.02e-06 a.4.1.9,a.121.1.1 106295,106296 3cwrA 208 1.18e-06 3bniA 229 1.28e-06 2rekA 199 1.52e-06 2guhA 214 2.28e-06 2np5A 203 3.49e-06 a.4.1.9,a.121.1.1 138424,138425 2oerA 214 3.58e-06 2zb9A 214 4.43e-06 2oi8A 216 5.04e-06 2dg8A 193 5.59e-06 1v7bA 185 7.88e-06 a.4.1.9,a.121.1.1 119861,119862 3cjdA 198 9.52e-06 3bqyA 209 1.15e-05 2dg7A 195 1.21e-05 2hkuA 215 1.93e-05 2yveA 185 2.11e-05 2o7oA 207 2.40e-05 a.4.1.9,a.121.1.1 138930,138931 2tct 207 3.15e-05 2tct 2vprA 207 4.46e-05 1z0xA 220 6.44e-05 a.4.1.9,a.121.1.1 124334,124335 1a6i 217 9.02e-05 2tct 2o7tA 199 1.50e-04 2qkoA 215 4.39e-04 1zk8A 183 5.53e-04 a.4.1.9,a.121.1.1 125177,125178 2g7lA 243 5.83e-04 a.4.1.9,a.121.1.1 134734,134735 2optA 234 1.23e-03 2hxoA 237 1.28e-03 2iu5A 195 4.45e-03 2g7gA 213 2.24e-02 a.4.1.9,a.121.1.1 134732,134733 2qxlA 658 4.60e-01 1bupA 386 4.82e-01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1kay 381 5.09e-01 1ba1 1yuwA 554 9.15e-01 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 1ufaA 520 1.62e+00 a.8.3.3,c.6.2.4 99329,99330 1eswA 500 4.00e+00 1cwyA c.1.8.1 59500 1uuqA 440 4.06e+00 c.1.8.3 100015 2douA 376 4.51e+00 1djxB 624 5.52e+00 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17343,23160,29588 1pbgA 468 6.10e+00 1e70M c.1.8.4 28946 1cfzA 162 6.11e+00 1cfzA c.56.1.1 33754 2i2xB 258 8.38e+00 3c1mA 473 9.99e+00 2gsoA 393 1.02e+01 2a7kA 250 1.10e+01 c.14.1.3 126341 1fj2A 232 1.42e+01 1auoA c.69.1.14 34720 2on5A 206 1.45e+01 1ex2A 189 1.48e+01 1ex2A c.51.4.2 33225 1x6vA 630 1.49e+01 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 3fruA 269 1.57e+01 1agdA b.1.1.2,d.19.1.1 20657,38150 2q0zX 339 1.63e+01 2qulA 290 1.68e+01 1ciy 590 1.70e+01 1ciy 1ciyA 590 1.70e+01 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1odoA 408 1.72e+01 a.104.1.1 92783 2fr7A 412 1.77e+01 1j97A 211 1.78e+01 1f5sA c.108.1.4 62753 1h0bA 256 1.81e+01 b.29.1.11 83422 2a65A 519 1.83e+01 1e6bA 221 1.89e+01 1e6bA a.45.1.1,c.47.1.5 59294,59295 2bw8A 227 2.09e+01 b.29.1.11 129324 1djxA 624 2.21e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17342,23159,29587 2zc2A 78 2.22e+01 1wkbA 810 2.27e+01 1l7mA 211 2.38e+01 c.108.1.4 73664 1ya0A 497 2.40e+01 a.118.8.1 122785 1b5l 172 2.64e+01 1b5l 1b5lA 172 2.64e+01 a.26.1.3 16900 1y60A 169 2.80e+01 d.14.1.12 116489 1z8oA 404 2.86e+01 a.104.1.1 124722 2hgsA 474 2.88e+01 2hgsA c.30.1.4,d.142.1.6 31722,75997 1jipA 403 2.91e+01 a.104.1.1 66748 1n2sA 299 2.97e+01 c.2.1.2 79857 1v5vA 401 3.00e+01 b.44.2.1,d.250.1.1 113539,113540 2yx6A 121 3.01e+01 1dxeA 256 3.02e+01 1dxeA c.1.12.5 29310 2eueA 279 3.03e+01 1sh5A 245 3.16e+01 a.40.1.1,a.40.1.1 105543,105544 1eupA 403 3.30e+01 1rom a.104.1.1 18967 1kfwA 435 3.37e+01 c.1.8.5,d.26.3.1 77376,77377 1uwkA 557 3.40e+01 e.51.1.1 108065 3bujA 397 3.47e+01 2f5tX 233 3.53e+01 1ltlA 279 3.55e+01 b.40.4.11 84701 1wmwA 330 3.57e+01 2q7sA 290 3.61e+01 2g39A 497 3.62e+01 c.124.1.2,c.124.1.2 134553,134554 1q59A 172 3.63e+01 f.1.4.1 95881 1w36C 1122 3.65e+01 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1yslA 402 3.67e+01 1pjr 724 3.70e+01 1pjr 1pjrA 724 3.70e+01 c.37.1.19,c.37.1.19 32391,32392 3bqpA 80 3.75e+01 1rypI 222 3.91e+01 d.153.1.4 41877 2qs8A 418 3.96e+01 1j09A 468 4.01e+01 a.97.1.1,c.26.1.1 77025,77026 1cy9A 264 4.05e+01 1ecl e.10.1.1 43236 1vmaA 306 4.06e+01 a.24.13.1,c.37.1.10 108887,108888 1pz1A 333 4.07e+01 c.1.7.1 95390 2oxoA 103 4.09e+01 1dl2A 511 4.11e+01 1dl2A a.102.2.1 18844 1t9mA 214 4.22e+01 b.45.1.1 112364 1hzfA 367 4.25e+01 a.102.4.4 76731 2vg0A 227 4.34e+01 1sxrA 183 4.37e+01 d.118.1.1 106101 1x9fB 145 4.39e+01 a.1.1.2 114984 2cm2A 304 4.50e+01 c.45.1.2 130610 1v2aA 210 4.64e+01 a.45.1.1,c.47.1.5 100263,100264 1u0mA 382 4.65e+01 c.95.1.2,c.95.1.2 107557,107558 2qeeA 437 4.68e+01 1m7vA 363 4.71e+01 d.174.1.1 78748 1w63A 618 4.71e+01 i.23.1.1 109192 1eu8A 409 4.79e+01 1eu8A c.94.1.1 59502 1gln 468 4.79e+01 1gln 1xqiA 195 4.83e+01 d.58.6.1 122237 1wtyA 119 4.89e+01 a.24.16.2 114880 2ovjA 201 4.97e+01 2e60A 101 5.04e+01 2yrrA 353 5.22e+01 1cjxA 357 5.22e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1jjfA 268 5.28e+01 c.69.1.2 66765 3xis 387 5.29e+01 4xis 2ax4A 198 5.31e+01 1vbuA 328 5.33e+01 c.1.8.3 119963 2plrA 213 5.34e+01 2pftA 571 5.38e+01 1bg4A 302 5.40e+01 c.1.8.3 28806 1m0uA 249 5.47e+01 a.45.1.1,c.47.1.5 78359,78360 2bmaA 470 5.57e+01 2q01A 497 5.57e+01 2zf5O 497 5.61e+01 2im5A 394 5.63e+01 1tqhA 247 5.67e+01 c.69.1.29 107225 1xyzA 347 5.71e+01 1taxA c.1.8.3 28804 4xis 387 5.75e+01 4xis 1j1qA 261 5.77e+01 d.165.1.1 90768 2ivnA 330 5.90e+01 2nvoA 535 5.93e+01 2avnA 260 5.94e+01 c.66.1.41 127380 2r5sA 176 5.95e+01 2i0oA 304 6.01e+01 2gsjA 271 6.04e+01 1jndA 420 6.12e+01 c.1.8.5,d.26.3.1 71757,71758 2comA 124 6.12e+01 a.4.1.18 130679 1a8h 500 6.20e+01 1a8h 1ypvA 313 6.36e+01 1tffA 234 6.51e+01 d.3.1.11 106854 1r3dA 264 6.60e+01 c.69.1.35 111680 1r8mE 203 6.68e+01 a.118.3.1 97242 1eyeA 280 6.70e+01 1aj2 c.1.21.1 29672 1izoA 417 6.74e+01 a.104.1.1 83851 2eg4A 230 6.77e+01 1zthA 258 6.79e+01 2vm6A 150 6.79e+01 2depA 356 6.79e+01 2imsA 171 6.83e+01 2e9lA 469 6.85e+01 1aisB 200 6.87e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1r8sE 203 6.92e+01 a.118.3.1 97248 1o5xA 248 6.94e+01 c.1.1.1 92528 1bmtA 246 7.18e+01 1bmtA a.46.1.1,c.23.6.1 17757,31235 1jcfA 344 7.19e+01 c.55.1.1,c.55.1.1 62878,62879 1vdeA 454 7.26e+01 1vdeA b.86.1.2,d.95.2.2,d.95.2.2 28378,40581,40582 2d09A 407 7.28e+01 1tz9A 367 7.32e+01 c.1.15.6 107466 2i8aA 252 7.55e+01 1tedA 393 7.61e+01 c.95.1.2 106807 2pnkA 428 7.70e+01 1j93A 353 7.76e+01 c.1.22.1 66454 1zgdA 312 7.77e+01 1pbv 195 7.78e+01 1pbv 1pbvA 195 7.78e+01 a.118.3.1 19179 1qs0A 407 7.84e+01 1qs0A c.36.1.11 31829 2oc5A 244 7.91e+01 1i1qA 520 7.93e+01 1qdlA d.161.1.1 61543 1oe8A 211 7.96e+01 a.45.1.1,c.47.1.5 86905,86906 2pth 193 7.97e+01 2pth 2pthA 193 7.97e+01 c.56.3.1 33793 1s1fA 406 7.97e+01 a.104.1.1 112008