# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fx0A 180 7.162e-28 a.4.1.9 134269 a.121.1.1 134270 2hyjA 194 2.119e-27 2hkuA 192 5.791e-27 2raeA 194 3.934e-24 3bqyA 206 5.166e-24 1zkgA 201 9.301e-24 a.4.1.9 125194 a.121.1.1 125195 2rasA 201 1.284e-23 2jj7A 178 1.760e-23 2zcmA 178 2.141e-23 2i10A 180 2.311e-23 a.4.1.9 136960 a.121.1.1 136961 2rekA 173 6.245e-23 2g3bA 189 7.343e-23 a.4.1.9 134558 a.121.1.1 134559 2id6A 203 1.001e-22 3bruA 192 1.693e-22 2eh3A 172 2.149e-22 2g7sA 191 2.443e-22 a.4.1.9 134737 a.121.1.1 134738 2oi8A 204 3.813e-22 2d6yA 187 1.082e-21 a.4.1.9 131313 a.121.1.1 131314 3bjbA 176 1.464e-21 2iaiA 202 1.581e-21 2o7oA 208 1.807e-21 a.4.1.9 138930 a.121.1.1 138931 2zb9A 189 2.046e-21 3bhqA 203 2.392e-21 2vprA 198 2.896e-21 2iekA 200 3.142e-21 3colA 181 3.255e-21 2guhA 180 6.428e-21 2of7A 192 9.745e-21 2dg8A 176 1.061e-20 2iu5A 180 1.070e-20 2f07A 198 2.209e-20 3b81A 184 2.514e-20 1qvtA 187 2.620e-20 a.4.1.9 104602 a.121.1.1 104603 3bniA 175 4.540e-20 3crjA 191 7.276e-20 3cdlA 188 1.067e-19 2tct 199 1.436e-19 2tct 2gfnA 193 1.780e-19 a.4.1.9 135101 a.121.1.1 135102 2uxuA 207 2.407e-19 1ui5A 200 2.465e-19 a.4.1.9 107856 a.121.1.1 107857 3cwrA 194 2.497e-19 2pbxA 198 2.559e-19 3c2bA 201 5.490e-19 2fbqA 214 1.126e-18 a.4.1.9 133256 a.121.1.1 133257 1rktA 205 1.349e-18 a.4.1.9 97623 a.121.1.1 97624 1sgmA 185 1.576e-18 a.4.1.9 105537 a.121.1.1 105538 3bcgA 208 1.666e-18 1t33A 221 2.261e-18 a.4.1.9 106295 a.121.1.1 106296 1a6i 194 2.685e-18 2tct 2ibdA 193 3.177e-18 3ccyA 193 4.090e-18 2fq4A 185 6.991e-18 a.4.1.9 133937 a.121.1.1 133938 2fd5A 181 7.919e-18 a.4.1.9 133291 a.121.1.1 133292 2yveA 176 8.678e-18 2qwtA 168 1.139e-17 2oerA 180 1.351e-17 1t56A 194 1.361e-17 a.4.1.9 106428 a.121.1.1 106429 2q24A 174 2.549e-17 2genA 189 2.788e-17 a.4.1.9 135062 a.121.1.1 135063 1vi0A 190 3.043e-17 a.4.1.9 100720 a.121.1.1 100721 1pb6A 199 6.092e-17 a.4.1.9 88017 a.121.1.1 88018 2qtqA 205 9.043e-17 2g7lA 202 9.495e-17 a.4.1.9 134734 a.121.1.1 134735 2hytA 194 1.217e-16 2qcoA 203 1.950e-16 1jt6A 187 3.814e-16 a.4.1.9 67247 a.121.1.1 67248 2dg7A 188 4.093e-16 2optA 210 1.810e-15 2np5A 188 2.089e-15 a.4.1.9 138424 a.121.1.1 138425 1z77A 201 2.145e-15 a.4.1.9 124588 a.121.1.1 124589 1z0xA 217 3.313e-15 a.4.1.9 124334 a.121.1.1 124335 2id3A 192 4.187e-15 a.4.1.9 137261 a.121.1.1 137262 2o7tA 189 4.505e-15 2nx4A 195 5.220e-15 1v7bA 176 1.460e-14 a.4.1.9 119861 a.121.1.1 119862 2qibA 223 2.305e-14 2qkoA 175 1.078e-13 3cjdA 183 1.889e-13 2hxoA 208 2.626e-13 1zk8A 178 1.496e-12 a.4.1.9 125177 a.121.1.1 125178 2g7gA 198 1.727e-06 a.4.1.9 134732 a.121.1.1 134733 2b5aA 78 6.233e-02 a.35.1.3 127882 2bjcA 63 9.362e-02 a.35.1.5 128620 3b7hA 77 1.067e-01 1cjgA 63 1.141e-01 1pru a.35.1.5 17112 1r69 64 1.219e-01 1r69 1lccA 52 1.414e-01 1pru a.35.1.5 17110 2cro 66 1.472e-01 1r69 1y7yA 70 2.638e-01 a.35.1.3 122729 1y9qA 179 2.907e-01 a.35.1.8 116592 b.82.1.15 116593 1utxA 67 3.855e-01 a.35.1.3 108034 1lliA 90 4.226e-01 1lmb3 a.35.1.2 17025 2ef8A 85 4.797e-01 1b0nA 104 6.309e-01 1b0nA a.34.1.1 17001 a.35.1.3 17064 1lmb3 88 6.719e-01 1lmb3 2e27L 108 1.215e+00 1lw1A 176 1.442e+00 a.152.1.1 74290 1adrA 77 1.487e+00 a.35.1.2 17042 2croA 66 1.527e+00 a.35.1.2 17038 2jbzA 125 1.706e+00 2d7tL 111 1.811e+00 3bd3A 113 2.046e+00 1j05A 112 2.144e+00 b.1.1.1 90735 2q20A 109 2.176e+00 2r1jL 67 2.403e+00 3bs3A 63 2.733e+00 1ap2A 113 2.801e+00 8fabA b.1.1.1 20182 2ictA 95 2.973e+00 1r69A 64 3.184e+00 a.35.1.2 17028 3cecA 92 3.820e+00 1f3rB 258 3.895e+00 1f3rB b.1.1.1 20417 b.1.1.1 20416 1a6vL 111 3.900e+00 1mfa b.1.1.1 20256 1zud2 66 4.195e+00 1b0wA 109 4.634e+00 8fabA b.1.1.1 20532 1mvuA 113 4.717e+00 b.1.1.1 91474 1j1xL 108 4.860e+00 b.1.1.1 77064 1qdbA 474 5.088e+00 1qdbA a.138.1.3 19688 1uacL 108 5.297e+00 b.1.1.1 99133 1oaqL 111 5.630e+00 b.1.1.1 92708 1a7oL 107 6.113e+00 8fabA b.1.1.1 19942 1q0wA 25 6.131e+00 j.105.1.1 95515 1a7qL 107 6.156e+00 8fabA b.1.1.1 19954 1a7pL 108 6.420e+00 8fabA b.1.1.1 19950 1qfwM 108 6.652e+00 32c2A b.1.1.1 20436 2z35A 113 6.732e+00 2ebyA 103 6.944e+00 1u2wA 106 7.180e+00 a.4.5.5 119487 1efaA 329 7.243e+00 1tlfA a.35.1.5 17106 c.93.1.1 35691 1a7nL 108 7.613e+00 8fabA b.1.1.1 19940 1a6wL 110 8.013e+00 1mfa b.1.1.1 20252 2oqgA 110 8.219e+00 1y0uA 90 8.228e+00 a.4.5.5 116310 1a14L 105 8.746e+00 8fabA b.1.1.1 20060 1eeqA 114 8.823e+00 32c2A b.1.1.1 20544 1oahA 476 8.836e+00 a.138.1.3 86736 1nqbA 233 9.002e+00 1mfa b.1.1.1 20043 b.1.1.1 20042 2a9mL 108 9.101e+00 1dlfL 114 9.347e+00 8fabA b.1.1.1 20382 1smtA 99 9.535e+00 1smtA a.4.5.5 16109 1a6uL 109 1.024e+01 1mfa b.1.1.1 20254 2cpmA 95 1.051e+01 1dwkA 157 1.067e+01 1dw9A a.35.1.4 17075 d.72.1.1 39606 2h27A 72 1.068e+01 a.4.13.2 135993 1x91A 150 1.102e+01 a.29.6.1 114975 2ey4C 74 1.102e+01 b.43.3.5 132582 2f4mB 62 1.131e+01 a.189.1.1 132931 2bnmA 195 1.139e+01 a.35.1.3 128835 b.82.1.10 128836 1r1tA 99 1.167e+01 a.4.5.5 104769 3bhpA 53 1.301e+01 1gu9A 173 1.304e+01 a.152.1.1 65540 1h5bA 114 1.367e+01 1tvdA b.1.1.1 60638 1j5kA 77 1.441e+01 d.51.1.1 71565 1jftA 341 1.474e+01 a.35.1.5 66652 c.93.1.1 66653 2qsfX 105 1.486e+01 1g7jA 108 1.510e+01 32c2A b.1.1.1 19932 1r1uA 95 1.525e+01 a.4.5.5 104771 2hp4A 115 1.526e+01 2yz1A 115 1.545e+01 1bwwA 110 1.557e+01 8fabA b.1.1.1 20518 1hfeS 89 1.578e+01 1hfeS a.137.4.1 19640 2g47A 965 1.590e+01 1e08D 89 1.592e+01 i.4.1.1 45915 1xg2B 152 1.614e+01 1eeuA 113 1.638e+01 32c2A b.1.1.1 20546 1fs7A 472 1.692e+01 1qdbA a.138.1.3 19691 1a2yA 108 1.704e+01 8fabA b.1.1.1 19926 1akjD 115 1.713e+01 1cd8 b.1.1.1 19712 1i8kA 107 1.726e+01 b.1.1.1 71130 1mqkL 109 1.748e+01 b.1.1.1 85054 2auwA 152 1.768e+01 a.35.1.10 127339 d.331.1.1 127340 1bl0A 117 1.782e+01 1d5yA a.4.1.8 16053 a.4.1.8 16054 2pcoA 27 1.866e+01 1pveA 73 1.871e+01 a.189.1.1 104322 2aabL 218 1.896e+01 1xgyL 217 1.904e+01 1h5yA 253 1.958e+01 c.1.2.1 65638 1q2hA 64 1.998e+01 a.34.4.1 104498 1lp9E 195 2.321e+01 b.1.1.1 91086 b.1.1.2 91087 2v3mA 95 2.381e+01 1vh7A 251 2.713e+01 c.1.2.1 100646 6paxA 134 2.752e+01 6paxA a.4.1.5 64758 a.4.1.5 64759 2ih3B 213 2.795e+01 1k78A 125 2.901e+01 a.4.1.5 68255 a.4.1.5 68256 2z37A 245 2.952e+01 1ymmD 97 2.976e+01 3bj91 117 2.994e+01 1z7bA 335 3.102e+01 c.2.1.2 124599 2ajuL 217 3.126e+01 2q1zA 177 3.227e+01 1ub9A 101 3.332e+01 a.4.5.28 99159 1ac6A 111 3.380e+01 1tcrA b.1.1.1 20606 1ic8A 171 3.418e+01 a.4.1.1 76740 a.35.1.1 76741 1bqhG 123 3.425e+01 1cd8 b.1.1.1 19715 1kl7A 510 3.504e+01 c.79.1.1 72678 1dt4A 74 3.556e+01 1dt4A d.51.1.1 38799 1tvdA 117 3.620e+01 1tvdA b.1.1.1 20650 1zgwA 140 3.630e+01 1qyiA 381 3.640e+01 c.108.1.13 96595 1iufA 145 3.703e+01 a.4.1.7 71439 a.4.1.7 71440 2hepA 43 3.706e+01 1wn4A 29 3.709e+01 j.113.1.1 109426 1u8bA 133 3.821e+01 1mjuL 220 3.830e+01 b.1.1.1 91304 b.1.1.2 91305 1nyoA 164 3.873e+01 b.118.1.1 92345 1xdzA 239 3.876e+01 c.66.1.20 115196 1axtL 217 3.908e+01 8fabA b.1.1.1 20304 b.1.1.2 21296 2a3dA 74 3.917e+01 2a3dA k.9.1.1 46424 2f1vA 183 3.931e+01