# TARGET T0454 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0454.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1474 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.009 0.014 0.003 0.044 0.227 0.703 2 T 0.007 0.015 0.005 0.140 0.163 0.670 3 R 0.001 0.001 0.025 0.855 0.068 0.050 4 A 0.001 0.001 0.022 0.901 0.052 0.024 5 D 0.001 0.001 0.014 0.912 0.046 0.026 6 C 0.001 0.002 0.006 0.936 0.021 0.034 7 R 0.001 0.001 0.001 0.994 0.002 0.002 8 S 0.001 0.001 0.001 0.994 0.003 0.002 9 R 0.001 0.001 0.001 0.995 0.002 0.003 10 L 0.001 0.001 0.001 0.998 0.001 0.001 11 M 0.001 0.001 0.001 0.999 0.001 0.001 12 E 0.001 0.001 0.001 0.999 0.001 0.001 13 V 0.001 0.001 0.001 0.999 0.001 0.001 14 A 0.001 0.001 0.001 0.999 0.001 0.001 15 T 0.001 0.001 0.001 0.999 0.001 0.001 16 E 0.001 0.001 0.001 0.999 0.001 0.001 17 L 0.001 0.001 0.001 0.999 0.001 0.001 18 F 0.001 0.001 0.001 0.998 0.002 0.001 19 A 0.001 0.001 0.002 0.992 0.005 0.001 20 Q 0.001 0.001 0.004 0.979 0.012 0.005 21 K 0.001 0.001 0.005 0.904 0.032 0.059 22 G 0.001 0.004 0.004 0.060 0.212 0.719 23 F 0.007 0.009 0.016 0.012 0.526 0.429 24 Y 0.032 0.006 0.060 0.016 0.672 0.213 25 G 0.168 0.019 0.093 0.015 0.552 0.153 26 V 0.477 0.058 0.022 0.010 0.181 0.252 27 S 0.331 0.075 0.006 0.020 0.064 0.505 28 I 0.003 0.001 0.017 0.952 0.019 0.009 29 R 0.001 0.001 0.007 0.982 0.010 0.001 30 E 0.001 0.001 0.003 0.985 0.011 0.001 31 L 0.001 0.001 0.002 0.989 0.008 0.001 32 A 0.001 0.001 0.002 0.990 0.007 0.002 33 Q 0.001 0.001 0.010 0.966 0.020 0.003 34 A 0.001 0.001 0.014 0.949 0.025 0.012 35 A 0.001 0.001 0.010 0.863 0.038 0.088 36 G 0.001 0.001 0.001 0.010 0.041 0.947 37 A 0.007 0.010 0.001 0.003 0.054 0.926 38 S 0.024 0.012 0.001 0.009 0.075 0.881 39 I 0.002 0.001 0.023 0.907 0.033 0.034 40 S 0.002 0.001 0.017 0.954 0.021 0.006 41 M 0.002 0.001 0.012 0.972 0.011 0.003 42 I 0.001 0.001 0.002 0.996 0.001 0.001 43 S 0.002 0.001 0.003 0.991 0.002 0.001 44 Y 0.004 0.001 0.007 0.979 0.008 0.002 45 H 0.006 0.001 0.005 0.955 0.021 0.013 46 F 0.006 0.007 0.006 0.653 0.156 0.173 47 G 0.002 0.007 0.003 0.222 0.223 0.543 48 G 0.001 0.003 0.002 0.136 0.156 0.702 49 K 0.001 0.001 0.007 0.977 0.012 0.003 50 E 0.001 0.001 0.005 0.977 0.014 0.004 51 G 0.001 0.001 0.009 0.978 0.010 0.002 52 L 0.001 0.001 0.003 0.989 0.003 0.004 53 Y 0.001 0.001 0.002 0.992 0.003 0.003 54 A 0.001 0.001 0.002 0.992 0.003 0.002 55 A 0.001 0.001 0.003 0.993 0.003 0.001 56 V 0.001 0.001 0.002 0.993 0.003 0.001 57 L 0.001 0.001 0.002 0.988 0.006 0.004 58 Q 0.001 0.001 0.001 0.968 0.013 0.017 59 E 0.001 0.001 0.002 0.955 0.017 0.026 60 Q 0.001 0.001 0.003 0.945 0.018 0.033 61 F 0.001 0.001 0.007 0.856 0.053 0.083 62 A 0.001 0.001 0.008 0.864 0.056 0.071 63 C 0.001 0.001 0.012 0.856 0.059 0.072 64 F 0.001 0.001 0.006 0.917 0.034 0.042 65 G 0.001 0.001 0.008 0.905 0.041 0.045 66 Q 0.001 0.001 0.007 0.914 0.039 0.039 67 L 0.001 0.001 0.007 0.936 0.026 0.030 68 D 0.001 0.001 0.015 0.916 0.038 0.029 69 D 0.001 0.001 0.035 0.881 0.057 0.025 70 I 0.001 0.001 0.045 0.849 0.069 0.037 71 R 0.001 0.001 0.060 0.774 0.103 0.061 72 G 0.001 0.002 0.135 0.596 0.193 0.073 73 Q 0.001 0.001 0.111 0.307 0.350 0.230 74 A 0.002 0.001 0.038 0.100 0.353 0.507 75 G 0.003 0.004 0.014 0.054 0.254 0.672 76 D 0.005 0.009 0.007 0.045 0.124 0.809 77 P 0.001 0.001 0.028 0.905 0.038 0.028 78 L 0.001 0.001 0.018 0.955 0.020 0.007 79 A 0.001 0.001 0.015 0.957 0.021 0.007 80 V 0.001 0.001 0.010 0.977 0.010 0.003 81 M 0.001 0.001 0.003 0.989 0.005 0.003 82 T 0.001 0.001 0.002 0.988 0.006 0.003 83 A 0.001 0.001 0.002 0.986 0.006 0.007 84 Y 0.001 0.001 0.003 0.985 0.005 0.006 85 L 0.001 0.001 0.003 0.985 0.005 0.007 86 R 0.001 0.001 0.003 0.986 0.005 0.005 87 W 0.001 0.001 0.003 0.980 0.008 0.009 88 T 0.001 0.001 0.002 0.986 0.005 0.007 89 I 0.001 0.001 0.005 0.980 0.007 0.007 90 Q 0.001 0.001 0.010 0.964 0.016 0.009 91 R 0.001 0.001 0.019 0.935 0.026 0.018 92 H 0.003 0.002 0.030 0.835 0.085 0.045 93 R 0.005 0.003 0.029 0.776 0.133 0.055 94 N 0.003 0.002 0.019 0.566 0.224 0.186 95 N 0.003 0.003 0.008 0.180 0.346 0.461 96 P 0.003 0.001 0.028 0.571 0.237 0.160 97 Q 0.004 0.003 0.030 0.738 0.147 0.079 98 L 0.005 0.002 0.034 0.900 0.039 0.018 99 L 0.016 0.002 0.017 0.934 0.015 0.015 100 R 0.018 0.001 0.012 0.953 0.008 0.009 101 F 0.016 0.001 0.011 0.963 0.005 0.005 102 Y 0.014 0.001 0.007 0.967 0.005 0.006 103 T 0.018 0.001 0.007 0.958 0.008 0.008 104 S 0.015 0.001 0.009 0.951 0.013 0.011 105 E 0.010 0.001 0.014 0.920 0.029 0.025 106 L 0.010 0.002 0.017 0.849 0.060 0.063 107 T 0.009 0.003 0.031 0.696 0.140 0.121 108 N 0.006 0.004 0.030 0.451 0.242 0.267 109 P 0.003 0.003 0.026 0.305 0.237 0.426 110 T 0.003 0.002 0.028 0.302 0.239 0.426 111 P 0.002 0.002 0.062 0.607 0.190 0.137 112 C 0.002 0.002 0.068 0.711 0.134 0.082 113 F 0.003 0.002 0.045 0.768 0.111 0.071 114 A 0.004 0.002 0.026 0.820 0.078 0.071 115 A 0.002 0.002 0.024 0.868 0.059 0.046 116 I 0.002 0.002 0.023 0.908 0.039 0.027 117 V 0.002 0.002 0.023 0.889 0.046 0.038 118 S 0.002 0.001 0.016 0.898 0.048 0.035 119 P 0.001 0.001 0.013 0.910 0.037 0.039 120 A 0.001 0.001 0.012 0.856 0.050 0.079 121 I 0.002 0.001 0.011 0.864 0.045 0.077 122 A 0.002 0.001 0.009 0.873 0.048 0.068 123 S 0.001 0.001 0.012 0.880 0.040 0.066 124 V 0.002 0.001 0.011 0.923 0.023 0.040 125 I 0.002 0.001 0.008 0.946 0.016 0.027 126 R 0.001 0.001 0.007 0.960 0.013 0.019 127 L 0.001 0.001 0.008 0.969 0.008 0.014 128 L 0.001 0.001 0.003 0.980 0.006 0.011 129 A 0.001 0.001 0.001 0.992 0.003 0.004 130 E 0.001 0.001 0.001 0.991 0.003 0.004 131 S 0.001 0.001 0.001 0.992 0.003 0.005 132 I 0.001 0.001 0.001 0.992 0.003 0.004 133 E 0.001 0.001 0.001 0.988 0.007 0.004 134 A 0.001 0.001 0.001 0.984 0.008 0.006 135 G 0.001 0.001 0.003 0.967 0.018 0.011 136 M 0.001 0.001 0.012 0.947 0.025 0.015 137 T 0.002 0.001 0.014 0.930 0.031 0.024 138 R 0.002 0.001 0.012 0.841 0.049 0.095 139 G 0.007 0.003 0.004 0.063 0.129 0.794 140 L 0.040 0.016 0.005 0.032 0.155 0.752 141 F 0.067 0.038 0.015 0.045 0.221 0.614 142 R 0.039 0.034 0.070 0.028 0.673 0.157 143 R 0.025 0.003 0.090 0.023 0.714 0.145 144 D 0.011 0.005 0.059 0.018 0.738 0.170 145 L 0.012 0.062 0.013 0.019 0.574 0.321 146 H 0.003 0.008 0.002 0.018 0.111 0.858 147 A 0.001 0.001 0.025 0.925 0.028 0.022 148 V 0.001 0.001 0.015 0.961 0.018 0.005 149 N 0.001 0.001 0.013 0.977 0.007 0.003 150 S 0.001 0.001 0.002 0.996 0.001 0.001 151 A 0.001 0.001 0.001 0.998 0.001 0.001 152 L 0.001 0.001 0.001 0.998 0.001 0.001 153 A 0.001 0.001 0.001 0.998 0.001 0.001 154 L 0.001 0.001 0.001 0.999 0.001 0.001 155 A 0.001 0.001 0.001 0.998 0.001 0.001 156 G 0.001 0.001 0.001 0.996 0.001 0.001 157 M 0.001 0.001 0.002 0.994 0.002 0.002 158 V 0.001 0.001 0.002 0.993 0.002 0.003 159 N 0.001 0.001 0.003 0.988 0.004 0.005 160 Y 0.001 0.001 0.006 0.978 0.008 0.008 161 F 0.001 0.001 0.009 0.968 0.012 0.009 162 F 0.001 0.001 0.012 0.952 0.022 0.013 163 L 0.002 0.001 0.014 0.923 0.034 0.028 164 S 0.003 0.002 0.013 0.843 0.052 0.088 165 T 0.005 0.002 0.024 0.767 0.081 0.121 166 L 0.008 0.004 0.043 0.737 0.111 0.097 167 A 0.009 0.003 0.051 0.781 0.094 0.061 168 T 0.011 0.003 0.058 0.753 0.107 0.068 169 E 0.012 0.003 0.085 0.688 0.127 0.086 170 G 0.012 0.004 0.087 0.663 0.133 0.101 171 L 0.016 0.009 0.066 0.579 0.191 0.140 172 T 0.019 0.010 0.050 0.403 0.262 0.256 173 S 0.014 0.005 0.035 0.150 0.353 0.443 174 H 0.011 0.007 0.080 0.130 0.402 0.370 175 S 0.014 0.011 0.098 0.137 0.415 0.325 176 P 0.011 0.009 0.079 0.133 0.401 0.367 177 D 0.005 0.009 0.022 0.114 0.307 0.543 178 Q 0.003 0.003 0.006 0.155 0.133 0.700 179 D 0.001 0.001 0.004 0.930 0.024 0.040 180 E 0.001 0.001 0.004 0.945 0.027 0.023 181 E 0.001 0.001 0.007 0.960 0.019 0.013 182 L 0.001 0.001 0.004 0.983 0.006 0.006 183 I 0.001 0.001 0.004 0.982 0.008 0.005 184 R 0.001 0.001 0.004 0.983 0.007 0.006 185 Q 0.001 0.001 0.004 0.979 0.007 0.010 186 Y 0.001 0.001 0.004 0.986 0.005 0.005 187 V 0.001 0.001 0.003 0.983 0.005 0.009 188 A 0.001 0.001 0.003 0.974 0.005 0.018 189 I 0.001 0.001 0.001 0.993 0.001 0.004 190 F 0.001 0.001 0.001 0.997 0.001 0.001 191 T 0.001 0.001 0.001 0.996 0.002 0.001 192 R 0.001 0.001 0.002 0.996 0.002 0.001 193 G 0.001 0.001 0.002 0.993 0.003 0.001 194 I 0.001 0.001 0.004 0.988 0.005 0.002 195 M 0.001 0.001 0.006 0.963 0.015 0.015 196 A 0.002 0.001 0.016 0.796 0.073 0.111 197 D 0.009 0.017 0.021 0.353 0.164 0.437 198 G 0.013 0.010 0.025 0.068 0.258 0.626 199 G 0.029 0.009 0.040 0.043 0.330 0.550 200 A 0.026 0.010 0.048 0.025 0.280 0.611 201 A 0.026 0.015 0.029 0.022 0.233 0.675 202 P 0.012 0.008 0.016 0.028 0.158 0.778 203 A 0.001 0.003 0.003 0.009 0.043 0.941