# List of top-scoring protein chains for t2k.100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1pb6A 212 4.09e-19 a.4.1.9 88017 a.121.1.1 88018 1vi0A 206 4.25e-15 a.4.1.9 100720 a.121.1.1 100721 2fbqA 235 4.83e-15 a.4.1.9 133256 a.121.1.1 133257 3bcgA 215 8.58e-15 2qtqA 213 9.72e-15 2fx0A 201 1.17e-14 a.4.1.9 134269 a.121.1.1 134270 2iekA 200 1.90e-14 2ibdA 204 1.94e-14 1zkgA 212 1.98e-14 a.4.1.9 125194 a.121.1.1 125195 2jj7A 186 2.38e-14 3cdlA 203 3.26e-14 2id6A 202 3.95e-14 1z77A 200 4.00e-14 a.4.1.9 124588 a.121.1.1 124589 2genA 197 4.70e-14 a.4.1.9 135062 a.121.1.1 135063 3bhqA 211 7.22e-14 2uxuA 210 7.68e-14 2hytA 197 1.06e-13 2iaiA 230 1.37e-13 2f07A 197 2.72e-13 2g7sA 194 3.57e-13 a.4.1.9 134737 a.121.1.1 134738 3bruA 222 5.35e-13 1t33A 224 6.86e-13 a.4.1.9 106295 a.121.1.1 106296 1rktA 205 7.07e-13 a.4.1.9 97623 a.121.1.1 97624 2g3bA 208 7.74e-13 a.4.1.9 134558 a.121.1.1 134559 2d6yA 202 1.30e-12 a.4.1.9 131313 a.121.1.1 131314 2eh3A 179 1.94e-12 1qvtA 194 1.95e-12 a.4.1.9 104602 a.121.1.1 104603 1ui5A 215 2.36e-12 a.4.1.9 107856 a.121.1.1 107857 1jt6A 188 3.08e-12 a.4.1.9 67247 a.121.1.1 67248 2pbxA 203 3.69e-12 3crjA 199 3.76e-12 2qibA 231 4.95e-12 2qwtA 196 7.45e-12 2gfnA 209 7.96e-12 a.4.1.9 135101 a.121.1.1 135102 2zcmA 192 8.02e-12 2fq4A 192 1.17e-11 a.4.1.9 133937 a.121.1.1 133938 2nx4A 194 1.33e-11 2q24A 194 3.22e-11 3ccyA 203 3.90e-11 1t56A 216 5.46e-11 a.4.1.9 106428 a.121.1.1 106429 2guhA 214 7.35e-11 2hyjA 200 9.16e-11 2i10A 202 9.21e-11 a.4.1.9 136960 a.121.1.1 136961 2rasA 212 9.72e-11 2np5A 203 1.39e-10 a.4.1.9 138424 a.121.1.1 138425 2hkuA 215 1.69e-10 3colA 196 1.72e-10 2rekA 199 2.18e-10 3c2bA 221 3.37e-10 3b81A 203 4.27e-10 2zb9A 214 4.73e-10 1sgmA 191 5.44e-10 a.4.1.9 105537 a.121.1.1 105538 2qcoA 210 7.00e-10 3bjbA 207 1.18e-09 3cjdA 198 1.44e-09 2raeA 207 1.46e-09 2dg8A 193 1.70e-09 3bniA 229 1.82e-09 2id3A 225 2.56e-09 a.4.1.9 137261 a.121.1.1 137262 2of7A 260 4.46e-09 1v7bA 185 6.14e-09 a.4.1.9 119861 a.121.1.1 119862 2yveA 185 8.71e-09 3cwrA 208 1.30e-08 2oerA 214 1.96e-08 3bqyA 209 2.03e-08 2oi8A 216 4.58e-08 2o7tA 199 5.16e-08 2qkoA 215 6.23e-08 1zk8A 183 6.66e-08 a.4.1.9 125177 a.121.1.1 125178 2fd5A 180 7.21e-08 a.4.1.9 133291 a.121.1.1 133292 2tct 207 7.92e-08 2tct 1z0xA 220 8.84e-08 a.4.1.9 124334 a.121.1.1 124335 2o7oA 207 1.68e-07 a.4.1.9 138930 a.121.1.1 138931 1a6i 217 1.79e-07 2tct 2vprA 207 3.28e-07 2dg7A 195 1.03e-06 2optA 234 2.64e-06 2hxoA 237 3.24e-06 2g7lA 243 1.40e-05 a.4.1.9 134734 a.121.1.1 134735 2g7gA 213 1.78e-05 a.4.1.9 134732 a.121.1.1 134733 2iu5A 195 5.46e-04 2rccA 346 7.41e-03 1gwcA 230 8.89e-01 a.45.1.1 70660 c.47.1.5 70661 1klxA 138 9.73e-01 a.118.18.1 77440 2a65A 519 1.17e+00 1mkmA 249 2.15e+00 a.4.5.33 79242 d.110.2.2 79243 2ihiA 395 2.20e+00 1dowA 205 2.66e+00 1dovA a.24.9.1 16626 1f0lA 535 2.67e+00 1ddt b.2.1.1 22377 d.166.1.1 42239 f.1.2.1 43382 1rtwA 220 3.64e+00 a.132.1.3 97823 1h3fA 432 4.03e+00 c.26.1.1 76631 d.66.1.4 76632 1clc 639 4.15e+00 1clc 1clcA 639 4.15e+00 a.102.1.2 18835 b.1.18.2 21872 1b0nA 111 4.24e+00 1b0nA a.34.1.1 17001 a.35.1.3 17064 1y10A 407 4.26e+00 1iq0A 592 4.34e+00 a.27.1.1 66257 c.26.1.1 66258 d.67.2.1 66259 2vefA 314 4.51e+00 1iw0A 215 5.25e+00 a.132.1.1 83720 1hlvA 131 5.31e+00 a.4.1.7 65854 a.4.1.7 65855 1a59A 378 5.51e+00 a.103.1.1 18902 2dg6A 222 5.62e+00 2jt1A 77 5.66e+00 1dlcA 584 5.77e+00 b.18.1.3 23719 b.77.2.1 27976 f.1.3.1 43391 1aisB 200 6.17e+00 1aisB a.74.1.2 18384 a.74.1.2 18385 1du6A 64 6.22e+00 1akhA a.4.1.1 16002 2ev1A 222 6.23e+00 1aw9A 216 6.26e+00 a.45.1.1 17736 c.47.1.5 33030 1yhuB 144 6.33e+00 1xqiA 195 6.33e+00 d.58.6.1 122237 2bjcA 62 6.93e+00 a.35.1.5 128620 1wzdA 215 7.02e+00 a.132.1.1 121493 1bgeA 175 7.32e+00 1bgc a.26.1.1 16823 1b8iB 63 7.43e+00 1akhA a.4.1.1 16011 1oxjA 173 7.48e+00 a.60.1.2 87517 a.118.1.13 87518 1rcwA 231 7.58e+00 a.132.1.4 97299 1ufaA 520 8.03e+00 a.8.3.3 99329 c.6.2.4 99330 2pg4A 95 8.31e+00 1zs3A 182 8.35e+00 a.25.1.1 125573 2qsfX 171 8.48e+00 1pufB 73 8.50e+00 a.4.1.1 95132 1lccA 51 9.12e+00 1pru a.35.1.5 17110 1b72B 87 9.60e+00 1akhA a.4.1.1 16001 1gtrA 553 9.60e+00 1gtrA b.53.1.2 26939 c.26.1.1 31578 2pn6A 150 9.70e+00 1pdnC 128 1.00e+01 6paxA a.4.1.5 16047 1a87 321 1.02e+01 1a87 1umdA 367 1.03e+01 c.36.1.11 99599 1gk9A 260 1.03e+01 d.153.1.2 65246 1qdbA 473 1.09e+01 1qdbA a.138.1.3 19688 2e7xA 150 1.11e+01 2aynA 404 1.15e+01 d.3.1.9 127563 1d0yA 761 1.15e+01 1lvk b.34.3.1 24581 c.37.1.9 32178 1qtqA 553 1.18e+01 1gtrA b.53.1.2 26940 c.26.1.1 31579 1q3qA 548 1.19e+01 a.129.1.2 95704 c.8.5.2 95705 d.56.1.2 95706 1rw6A 210 1.20e+01 a.47.4.1 105113 2q0zX 339 1.21e+01 1e0gA 48 1.24e+01 1e01A d.7.1.1 37325 2uy1A 493 1.27e+01 1bouA 139 1.29e+01 1bouA a.88.1.1 18521 2e60A 101 1.39e+01 2prrA 197 1.41e+01 1un8A 552 1.42e+01 a.208.1.1 99661 c.119.1.2 103806 2v26A 784 1.42e+01 2cyaA 364 1.43e+01 2q9rA 200 1.44e+01 1gm7A 209 1.45e+01 d.153.1.2 65302 1bw9A 356 1.49e+01 1bw9A c.2.1.7 30274 c.58.1.1 33922 2bkhA 814 1.50e+01 1ezfA 340 1.53e+01 1ezfA a.128.1.2 19440 1qc7A 101 1.54e+01 1qc7A a.118.14.1 18456 3cbuA 214 1.54e+01 1bjwA 382 1.62e+01 1bjwA c.67.1.1 34349 2abk 211 1.65e+01 2abk 2abkA 211 1.65e+01 a.96.1.1 18743 1z72A 225 1.69e+01 a.132.1.3 124583 2qf7A 1165 1.71e+01 1y8qB 640 1.72e+01 1c1dA 355 1.78e+01 1bw9A c.2.1.7 30270 c.58.1.1 33918 1lvk 762 1.80e+01 1lvk 2on5A 206 1.87e+01 1b5pA 385 1.89e+01 c.67.1.1 90403 2qz8A 149 1.90e+01 3fruA 269 1.95e+01 1agdA b.1.1.2 20657 d.19.1.1 38150 1jtvA 327 1.97e+01 c.2.1.2 84230 1ah7 245 1.97e+01 1ah7 1ah7A 245 1.97e+01 a.124.1.1 19339 1mroB 442 1.99e+01 1mroB a.89.1.1 18531 d.58.31.2 39449 1klnA 605 2.04e+01 1xwl c.55.3.5 33693 e.8.1.1 42986 1cjgA 62 2.07e+01 1pru a.35.1.5 17112 1tadA 324 2.10e+01 1cipA a.66.1.1 18194 c.37.1.8 32077 2p0nA 172 2.15e+01 2jn6A 97 2.19e+01 1sz9A 144 2.20e+01 a.118.9.4 106139 1r9kA 172 2.20e+01 a.168.1.1 104869 1jlwA 219 2.25e+01 a.45.1.1 71741 c.47.1.5 71742 1zp2A 235 2.26e+01 1aep 161 2.28e+01 1aep 1aepA 161 2.28e+01 a.63.1.1 18139 2q97T 129 2.31e+01 2i2xB 258 2.33e+01 1fds 327 2.36e+01 1fds 1jftA 340 2.42e+01 a.35.1.5 66652 c.93.1.1 66653 1ksoA 101 2.44e+01 a.39.1.2 72926 2rgxA 206 2.61e+01 2q67A 114 2.65e+01 2d58A 107 2.68e+01 2zfoB 142 2.69e+01 1hbnB 442 2.78e+01 1mroB a.89.1.1 60900 d.58.31.2 60901 2gykA 86 2.78e+01 2g2bA 150 2.78e+01 2pziA 681 2.78e+01 3bqpA 80 2.80e+01 1bgc 174 2.81e+01 1bgc 1bgcA 174 2.81e+01 a.26.1.1 16822 1p2xA 159 2.81e+01 a.40.1.1 104062 2f96A 224 2.82e+01 c.55.3.5 133153 1wvvA 265 2.86e+01 1ujpA 271 2.89e+01 c.1.2.4 99462 1fouA 309 2.89e+01 1fouA e.27.1.1 43364 1qpzA 340 2.94e+01 1qpzA a.35.1.5 17097 c.93.1.1 35673 2o7iA 592 2.97e+01 2cj4A 150 3.00e+01 a.29.6.1 130518 2avkA 136 3.04e+01 1gdeA 389 3.04e+01 c.67.1.1 60456 1mhyD 521 3.10e+01 1mhyD a.25.1.2 16780 1zavA 180 3.13e+01 2zc2A 78 3.16e+01 1sh5A 245 3.17e+01 a.40.1.1 105543 a.40.1.1 105544 1fr2A 86 3.19e+01 a.28.2.1 83256 1bs2A 607 3.30e+01 1bs2A a.27.1.1 16930 c.26.1.1 31597 d.67.2.1 39563 2ca5A 85 3.31e+01 a.2.20.1 130149 1njrA 284 3.32e+01 c.50.1.2 103858 3b7hA 78 3.35e+01 1mw7A 240 3.39e+01 e.39.1.1 79557 1l8qA 324 3.39e+01 a.4.12.2 77809 c.37.1.20 77810 1bedA 181 3.40e+01 c.47.1.13 90330 1pbv 195 3.41e+01 1pbv 1pbvA 195 3.41e+01 a.118.3.1 19179 1ecmA 109 3.41e+01 1ecmA a.130.1.1 19492 2p58C 116 3.43e+01 2ad6B 69 3.44e+01 a.137.2.1 126569 2p61A 162 3.45e+01 2nuwA 288 3.46e+01 2di4A 238 3.51e+01 a.269.1.1 131522 2r6aC 143 3.51e+01 1jr3A 373 3.52e+01 a.80.1.1 63245 c.37.1.20 63246 1gzsB 165 3.59e+01 a.168.1.1 76425 1jqoA 970 3.59e+01 c.1.12.3 77160 1dn1B 267 3.60e+01 1dn1B a.47.2.1 17771 1g2hA 61 3.61e+01 1g2hA a.4.1.12 60224 1d8yA 605 3.63e+01 1xwl c.55.3.5 33684 e.8.1.1 42977 1upkA 341 3.64e+01 a.118.1.15 99758 1frrA 95 3.65e+01 1awd d.15.4.1 37674 2vlqA 86 3.70e+01 1dovA 181 3.72e+01 1dovA a.24.9.1 16627 2pn1A 331 3.72e+01 2fug1 438 3.73e+01 2d7vA 162 3.73e+01 256bA 106 3.77e+01 256bA a.24.3.1 16539 1akaA 401 3.80e+01 1ajsA c.67.1.1 34258 1x7yA 400 3.81e+01 c.36.1.11 114944 2kfnA 605 3.82e+01 1xwl c.55.3.5 33682 e.8.1.1 42975 1kfrA 147 3.86e+01 a.1.1.2 72424 1pq9A 253 3.92e+01 a.123.1.1 95004 1r8mE 203 3.94e+01 a.118.3.1 97242 2vccA 891 3.99e+01