# List of top-scoring protein chains for T0454.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1pb6A 212 3.36e-18 a.4.1.9,a.121.1.1 88017,88018 1vi0A 206 3.61e-18 a.4.1.9,a.121.1.1 100720,100721 3bcgA 215 1.90e-17 3cdlA 203 1.27e-16 3bruA 222 1.62e-16 2uxuA 210 3.94e-16 2hytA 197 1.20e-15 2ibdA 204 2.18e-15 2i10A 202 2.60e-15 a.4.1.9,a.121.1.1 136960,136961 2g7sA 194 4.07e-15 a.4.1.9,a.121.1.1 134737,134738 2id6A 202 4.85e-15 1zkgA 212 4.87e-15 a.4.1.9,a.121.1.1 125194,125195 2iekA 200 4.94e-15 2iaiA 230 7.56e-15 2f07A 197 9.25e-15 2g3bA 208 1.48e-14 a.4.1.9,a.121.1.1 134558,134559 2genA 197 2.07e-14 a.4.1.9,a.121.1.1 135062,135063 3bhqA 211 2.13e-14 1rktA 205 3.19e-14 a.4.1.9,a.121.1.1 97623,97624 3c07A 273 3.82e-14 2eh3A 179 4.42e-14 1ui5A 215 4.82e-14 a.4.1.9,a.121.1.1 107856,107857 2pbxA 203 5.00e-14 2gfnA 209 5.34e-14 a.4.1.9,a.121.1.1 135101,135102 2fx0A 201 8.11e-14 a.4.1.9,a.121.1.1 134269,134270 3crjA 199 1.54e-13 2d6yA 202 1.77e-13 a.4.1.9,a.121.1.1 131313,131314 2nx4A 194 1.93e-13 2jj7A 186 2.66e-13 2qibA 231 3.84e-13 3ccyA 203 4.00e-13 1sgmA 191 4.01e-13 a.4.1.9,a.121.1.1 105537,105538 2qcoA 210 4.94e-13 1jt6A 188 5.54e-13 a.4.1.9,a.121.1.1 67247,67248 1rkwA 194 5.83e-13 a.4.1.9,a.121.1.1 104967,104968 2fbqA 235 6.70e-13 a.4.1.9,a.121.1.1 133256,133257 1qvtA 194 7.89e-13 a.4.1.9,a.121.1.1 104602,104603 2qtqA 213 9.68e-13 2qwtA 196 1.42e-12 2q24A 194 1.69e-12 2zcmA 192 1.97e-12 2zcnA 192 3.13e-12 2hyjA 200 3.29e-12 1u9nA 236 3.71e-12 a.4.1.9,a.121.1.1 113246,113247 1t56A 216 3.72e-12 a.4.1.9,a.121.1.1 106428,106429 2raeA 207 7.63e-12 2np3A 212 2.98e-11 a.4.1.9,a.121.1.1 138420,138421 3cjdA 198 3.59e-11 2fd5A 180 3.86e-11 a.4.1.9,a.121.1.1 133291,133292 2pz9A 226 5.58e-11 2fq4A 192 5.92e-11 a.4.1.9,a.121.1.1 133937,133938 2np5A 203 6.21e-11 a.4.1.9,a.121.1.1 138424,138425 2of7A 260 6.53e-11 2guhA 214 7.85e-11 2rekA 199 1.03e-10 2rasA 212 1.55e-10 3b81A 203 1.72e-10 3c2bA 221 2.82e-10 2dg8A 193 4.50e-10 3bniA 229 5.57e-10 3bjbA 207 7.75e-10 3cwrA 208 1.29e-09 1t33A 224 1.51e-09 a.4.1.9,a.121.1.1 106295,106296 2oerA 214 1.81e-09 2zb9A 214 3.22e-09 2yvhA 177 4.44e-09 1v7bA 185 4.45e-09 a.4.1.9,a.121.1.1 119861,119862 2dh0A 183 4.46e-09 2yveA 185 4.46e-09 2id3A 225 4.84e-09 a.4.1.9,a.121.1.1 137261,137262 3colA 196 7.66e-09 2oi8A 216 7.81e-09 2hkuA 215 1.63e-08 1zk8A 183 2.12e-08 a.4.1.9,a.121.1.1 125177,125178 2ns7A 208 4.57e-08 2dg7A 195 4.84e-08 2o7oA 207 5.15e-08 a.4.1.9,a.121.1.1 138930,138931 2tctA 207 5.35e-08 a.4.1.9,a.121.1.1 16063,19240 2trtA 217 5.52e-08 a.4.1.9,a.121.1.1 16064,19241 1qpiA 203 5.98e-08 a.4.1.9,a.121.1.1 16072,19249 2hxiA 241 7.02e-08 3bqyA 209 7.67e-08 2qkoA 215 1.71e-07 2vprA 207 1.71e-07 1a6iA 217 2.39e-07 a.4.1.9,a.121.1.1 16066,19243 1z0xA 220 4.92e-07 a.4.1.9,a.121.1.1 124334,124335 2o7tA 199 9.21e-07 2hxoA 237 1.13e-06 2g7lA 243 4.92e-06 a.4.1.9,a.121.1.1 134734,134735 2g7gA 213 5.28e-05 a.4.1.9,a.121.1.1 134732,134733 2optA 234 0.000114 2iu5A 195 0.000383 2e85A 159 0.2978 2i8lA 156 0.3008 2pg4A 95 5.068 1du6A 64 9.319 a.4.1.1 16002 1kftA 78 9.529 a.60.2.3 77375 1pruA 56 9.684 a.35.1.5 17104 1pufB 73 10.25 a.4.1.1 95132 1b72B 87 10.45 a.4.1.1 16001 1pveA 72 12.13 a.189.1.1 104322 1b8iB 63 14.97 a.4.1.1 16011 2douA 376 16.47 1lfuP 82 19.52 a.4.1.1 77939 1uxcA 65 21.35 a.35.1.5 17119 1qruA 553 28.19 b.53.1.2,c.26.1.1 26946,31585 1nylA 539 29.24 b.53.1.2,c.26.1.1 80741,80742 1qtqA 553 29.71 b.53.1.2,c.26.1.1 26940,31579 1qrtA 553 29.71 b.53.1.2,c.26.1.1 26943,31582 1o0cA 554 29.75 b.53.1.2,c.26.1.1 86529,86530 1qrsA 553 29.81 b.53.1.2,c.26.1.1 26941,31580 1euyA 548 29.82 b.53.1.2,c.26.1.1 26945,31584 2rd2A 556 30.41 1s7oA 113 33.36 a.4.13.3 105354 2bjcA 62 38.93 a.35.1.5 128620 3ctpA 330 41.97 1mhyD 521 43.75 a.25.1.2 16780 2q15A 385 47.89 3bj6A 152 48.12 2q11A 388 48.14 2vijA 392 48.15 1hlvA 131 48.48 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 57.17 1dk7A 146 57.18 c.8.5.1 30772 2fdpA 388 57.48 b.50.1.2 133316 2g94A 389 57.56 b.50.1.2 134790 1fknA 391 57.66 b.50.1.2 26879 2qp8A 395 57.80 2iqgA 406 57.94 b.50.1.2 137588 3buhA 409 58.79 1ym4A 408 59.30 b.50.1.2 123682 1ym2A 402 59.38 b.50.1.2 123679 2ohqA 402 59.41 b.50.1.2 139075 2zhvA 411 59.42 1w50A 411 59.66 b.50.1.2 109173 3ckpA 412 59.75 2qsjA 154 60.36 2ph8A 405 60.43 1jonA 155 60.88 c.8.5.1 30780 2qzlA 411 62.21 3b7hA 78 64.09 1lccA 51 68.72 a.35.1.5 17110 1j4zA 547 70.89 a.129.1.1,c.8.5.1,d.56.1.1 90838,90839,90840 1svtA 524 71.17 1ss8A 524 71.38 1sx3A 525 71.49 1kp8A 547 71.61 a.129.1.1,c.8.5.1,d.56.1.1 84414,84415,84416 2eu1A 548 73.14 2r6gF 514 74.35 1htbA 374 74.41 b.35.1.2,c.2.1.1 24715,29731 1hdyA 374 74.81 b.35.1.2,c.2.1.1 24723,29739 1u3uA 374 74.89 b.35.1.2,c.2.1.1 113005,113006 1hdzA 374 75.06 b.35.1.2,c.2.1.1 24725,29741 1gr5A 547 75.18 i.16.1.1 65478 1xckA 547 75.28 1sjyA 159 76.72 d.113.1.1 98900 1zcjA 463 78.69 2o5hA 136 79.97 2e60A 101 82.08 1lqcA 56 85.48 a.35.1.5 17109 3fruA 269 89.20 b.1.1.2,d.19.1.1 20657,38150 1la1A 192 89.59 c.8.5.1 73772 1kidA 203 89.79 c.8.5.1 30771 1sq6A 253 89.88 c.56.2.1 98964