# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 3.07e-22 a.4.1.9,a.121.1.1 100720,100721 1rktA 205 6.26e-22 a.4.1.9,a.121.1.1 97623,97624 3bhqA 211 8.05e-22 2id6A 202 9.12e-22 2pbxA 203 1.18e-21 2f07A 197 1.52e-21 2uxuA 210 1.57e-21 3bruA 222 1.71e-21 1zkgA 212 1.76e-21 a.4.1.9,a.121.1.1 125194,125195 3cwrA 208 2.17e-21 1pb6A 212 2.87e-21 a.4.1.9,a.121.1.1 88017,88018 2g7sA 194 3.16e-21 a.4.1.9,a.121.1.1 134737,134738 2ibdA 204 3.29e-21 3bcgA 215 3.48e-21 1z77A 200 3.81e-21 a.4.1.9,a.121.1.1 124588,124589 2rasA 212 4.13e-21 2hyjA 200 4.87e-21 2iekA 200 5.53e-21 3ccyA 203 6.13e-21 1t56A 216 6.80e-21 a.4.1.9,a.121.1.1 106428,106429 3crjA 199 7.16e-21 2i10A 202 9.02e-21 a.4.1.9,a.121.1.1 136960,136961 2qcoA 210 1.15e-20 2g3bA 208 1.21e-20 a.4.1.9,a.121.1.1 134558,134559 2fx0A 201 1.41e-20 a.4.1.9,a.121.1.1 134269,134270 2fq4A 192 1.63e-20 a.4.1.9,a.121.1.1 133937,133938 2jj7A 186 1.76e-20 1qvtA 194 2.58e-20 a.4.1.9,a.121.1.1 104602,104603 2genA 197 2.70e-20 a.4.1.9,a.121.1.1 135062,135063 2qtqA 213 3.34e-20 2iaiA 230 3.68e-20 2dg7A 195 4.01e-20 2hytA 197 5.14e-20 1jt6A 188 5.36e-20 a.4.1.9,a.121.1.1 67247,67248 2nx4A 194 6.62e-20 2raeA 207 6.68e-20 1ui5A 215 9.98e-20 a.4.1.9,a.121.1.1 107856,107857 2zb9A 214 1.12e-19 2of7A 260 1.21e-19 3cdlA 203 1.42e-19 2fbqA 235 1.84e-19 a.4.1.9,a.121.1.1 133256,133257 3b81A 203 2.04e-19 3c2bA 221 2.43e-19 2o7tA 199 3.49e-19 2np5A 203 4.07e-19 a.4.1.9,a.121.1.1 138424,138425 3colA 196 5.32e-19 2hkuA 215 6.13e-19 2qibA 231 8.50e-19 2dg8A 193 8.67e-19 2yveA 185 9.05e-19 2q24A 194 9.06e-19 2eh3A 179 9.39e-19 3cjdA 198 1.45e-18 2o7oA 207 1.58e-18 a.4.1.9,a.121.1.1 138930,138931 2iu5A 195 1.78e-18 1sgmA 191 3.13e-18 a.4.1.9,a.121.1.1 105537,105538 3bqyA 209 3.74e-18 2rekA 199 3.78e-18 1v7bA 185 4.12e-18 a.4.1.9,a.121.1.1 119861,119862 2d6yA 202 4.56e-18 a.4.1.9,a.121.1.1 131313,131314 2guhA 214 6.76e-18 2fd5A 180 6.88e-18 a.4.1.9,a.121.1.1 133291,133292 3bjbA 207 7.39e-18 3bniA 229 9.84e-18 1a6i 217 9.96e-18 2qwtA 196 1.00e-17 2vprA 207 1.28e-17 1t33A 224 1.34e-17 a.4.1.9,a.121.1.1 106295,106296 1zk8A 183 1.98e-17 a.4.1.9,a.121.1.1 125177,125178 2gfnA 209 5.26e-17 a.4.1.9,a.121.1.1 135101,135102 2oi8A 216 8.11e-17 2qkoA 215 2.64e-16 1z0xA 220 3.50e-16 a.4.1.9,a.121.1.1 124334,124335 2zcmA 192 4.99e-16 2oerA 214 3.02e-15 2g7lA 243 3.08e-15 a.4.1.9,a.121.1.1 134734,134735 2tct 207 6.12e-15 2optA 234 7.83e-15 2hxoA 237 1.43e-14 2id3A 225 3.66e-14 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 3.24e-11 a.4.1.9,a.121.1.1 134732,134733 2dt5A 211 1.360 a.4.5.38,c.2.1.12 131708,131709 3bbyA 215 1.563 2ev0A 142 1.690 a.4.5.24,a.76.1.1 132413,132414 2jn6A 97 1.749 1c0wA 225 2.131 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2pg4A 95 2.419 2bnmA 198 2.454 a.35.1.3,b.82.1.10 128835,128836 6paxA 133 2.568 a.4.1.5,a.4.1.5 64758,64759 1lccA 51 3.141 a.35.1.5 17110 2oxoA 103 3.199 1hlvA 131 3.427 a.4.1.7,a.4.1.7 65854,65855 1a5t 334 3.428 1xcbA 211 3.957 a.4.5.38,c.2.1.12 109552,109553 2bjcA 62 4.732 a.35.1.5 128620 2pjpA 121 4.761 1on2A 142 5.170 a.4.5.24,a.76.1.1 87103,87104 1cjgA 62 5.674 a.35.1.5 17112 1gulA 222 5.766 a.45.1.1,c.47.1.5 17675,32969 2qq9A 226 7.433 1pdnC 128 7.880 a.4.1.5 16047 1w07A 659 8.389 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1bi0 226 8.638 1gwcA 230 9.544 a.45.1.1,c.47.1.5 70660,70661 1jkoC 52 10.54 a.4.1.2 66809 1s7oA 113 11.45 a.4.13.3 105354 1fseA 74 12.12 a.4.6.2 60000 1f3aA 222 12.26 a.45.1.1,c.47.1.5 17701,32995 3b7hA 78 12.49 3bzcA 785 12.66 3bs3A 76 13.72 2hpkA 208 15.08 1zljA 78 18.54 1gseA 221 19.03 a.45.1.1,c.47.1.5 17667,32961 1oqyA 368 19.07 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1hg5A 289 19.69 a.7.8.2,a.118.9.3 90360,90361 2dtrA 226 20.19 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1neqA 74 20.48 a.35.1.2 17063 1vf1A 229 21.44 1utxA 66 21.91 a.35.1.3 108034 1p4wA 99 22.47 a.4.6.2 87783 1k3yA 221 22.84 a.45.1.1,c.47.1.5 77245,77246 1je8A 82 23.00 a.4.6.2 77108 1b0nA 111 23.19 a.34.1.1,a.35.1.3 17001,17064 1wsuA 124 24.18 a.4.5.35,a.4.5.35 121245,121246 2fbkA 181 24.68 a.4.5.28 133247 2ictA 94 26.25 1u8bA 133 27.35 1vz0A 230 27.55 a.4.14.1,d.268.1.1 108929,108930 2gsqA 202 27.79 a.45.1.1,c.47.1.5 17715,33009 1wpkA 146 28.62 1fx7A 230 29.99 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2cro 71 33.10 1tadA 324 34.04 a.66.1.1,c.37.1.8 18194,32077 1ret 43 34.36 1m0uA 249 35.15 a.45.1.1,c.47.1.5 78359,78360 2croA 71 35.38 a.35.1.2 17038 1k0dA 260 37.32 a.45.1.1,c.47.1.5 67930,67931 1yn9A 169 37.41 1iyhA 198 38.99 a.45.1.1,c.47.1.5 83790,83791 1f5tA 121 39.71 a.4.5.24,a.76.1.1 16203,18409 1ho8A 480 39.71 a.118.1.9 61107 1r69A 69 41.16 a.35.1.2 17028 2ig3A 127 41.34 1rzsA 61 41.62 a.35.1.2 105139 2scpA 174 42.35 a.39.1.5 17256 1hcrA 52 42.94 a.4.1.2 16020 1jj2U 70 43.19 a.2.2.1 63106 1b1bA 140 43.42 a.4.5.24,a.76.1.1 16215,18421 1iqpA 327 43.73 a.80.1.1,c.37.1.20 62649,62650 1vfsA 386 43.91 b.49.2.2,c.1.6.1 108584,108585 3bct 457 44.51 1xsvA 113 45.53 a.4.13.3 116003 1y9qA 192 45.98 a.35.1.8,b.82.1.15 116592,116593 1zr5A 214 46.30 c.50.1.2 125525 2auwA 170 46.32 a.35.1.10,d.331.1.1 127339,127340 2r1jL 68 47.44 1k3kA 158 49.33 f.1.4.1 72017 1fr2A 86 49.44 a.28.2.1 83256 2ebyA 113 53.12 1adrA 76 54.78 a.35.1.2 17042 1oe8A 211 54.92 a.45.1.1,c.47.1.5 86905,86906 1b48A 221 55.03 a.45.1.1,c.47.1.5 17703,32997 1y0uA 96 55.44 a.4.5.5 116310 2ivmA 150 59.03 1qpzA 340 59.58 a.35.1.5,c.93.1.1 17097,35673 2yxoA 267 60.10 1wdvA 152 63.45 d.116.1.1 114539 1bl0A 129 64.81 a.4.1.8,a.4.1.8 16053,16054 2de3A 365 67.07 1vpwA 340 67.93 a.35.1.5,c.93.1.1 17087,35680 1a0eA 443 68.16 c.1.15.3 29537 1g73A 162 70.75 a.7.4.1 16332 1resA 43 70.92 a.4.1.2 16023 1oktA 211 71.70 a.45.1.1,c.47.1.5 93272,93273 1sedA 117 71.75 a.219.1.1 105449 2z1dA 372 72.79 2h27A 73 72.98 a.4.13.2 135993 1y7yA 74 74.51 a.35.1.3 122729 1ehiA 377 74.61 c.30.1.2,d.142.1.1 31716,41484 2a9dA 372 75.64 b.1.18.6,d.176.1.1 126431,126432 1fewA 184 76.53 a.7.4.1 16334 2o3fA 111 76.54 1mmoB 384 76.98 a.25.1.2 16768 1v2aA 210 77.34 a.45.1.1,c.47.1.5 100263,100264 3cecA 104 77.57 2aelA 374 77.64 1cei 94 78.29 1sfxA 109 80.53 a.4.5.50 105505 2a8lA 420 81.24 2b5aA 77 81.34 a.35.1.3 127882 1r1uA 106 81.90 a.4.5.5 104771 2qsfX 171 82.01 1r69 69 82.12 2fjrA 189 83.02 1unkA 87 83.35 a.28.2.1 16935 2cohA 202 84.99 a.4.5.4,b.82.3.2 130677,130678 2bk6A 156 85.08 a.25.1.1 128660 2dbbA 151 86.60 2dtr 226 86.65