# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 3.80e-21 a.4.1.9,a.121.1.1 100720,100721 3bhqA 211 5.73e-21 1rktA 205 6.58e-21 a.4.1.9,a.121.1.1 97623,97624 2id6A 202 6.93e-21 2pbxA 203 9.23e-21 1zkgA 212 1.04e-20 a.4.1.9,a.121.1.1 125194,125195 2f07A 197 1.14e-20 2uxuA 210 1.22e-20 3bruA 222 1.63e-20 3cwrA 208 1.99e-20 1pb6A 212 2.46e-20 a.4.1.9,a.121.1.1 88017,88018 2g7sA 194 2.53e-20 a.4.1.9,a.121.1.1 134737,134738 1z77A 200 2.54e-20 a.4.1.9,a.121.1.1 124588,124589 3bcgA 215 2.68e-20 2ibdA 204 3.02e-20 2hyjA 200 3.48e-20 2iekA 200 3.98e-20 2rasA 212 4.07e-20 3crjA 199 4.73e-20 2i10A 202 5.50e-20 a.4.1.9,a.121.1.1 136960,136961 3ccyA 203 6.18e-20 1t56A 216 6.68e-20 a.4.1.9,a.121.1.1 106428,106429 2qcoA 210 7.73e-20 2g3bA 208 1.08e-19 a.4.1.9,a.121.1.1 134558,134559 2fx0A 201 1.25e-19 a.4.1.9,a.121.1.1 134269,134270 2fq4A 192 1.32e-19 a.4.1.9,a.121.1.1 133937,133938 1qvtA 194 1.97e-19 a.4.1.9,a.121.1.1 104602,104603 2genA 197 2.26e-19 a.4.1.9,a.121.1.1 135062,135063 2dg7A 195 2.41e-19 3cjdA 198 2.43e-19 2jj7A 186 2.57e-19 2iaiA 230 2.95e-19 2nx4A 194 3.27e-19 1jt6A 188 3.36e-19 a.4.1.9,a.121.1.1 67247,67248 2hytA 197 4.09e-19 3cdlA 203 4.62e-19 2qtqA 213 5.25e-19 2raeA 207 6.75e-19 2of7A 260 7.15e-19 2zb9A 214 8.99e-19 2fbqA 235 9.34e-19 a.4.1.9,a.121.1.1 133256,133257 1ui5A 215 9.97e-19 a.4.1.9,a.121.1.1 107856,107857 3b81A 203 1.32e-18 3c2bA 221 1.32e-18 2eh3A 179 2.66e-18 2yveA 185 2.86e-18 2np5A 203 2.89e-18 a.4.1.9,a.121.1.1 138424,138425 2dg8A 193 3.29e-18 2hkuA 215 4.13e-18 3colA 196 4.62e-18 2o7tA 199 5.53e-18 2o7oA 207 5.99e-18 a.4.1.9,a.121.1.1 138930,138931 2q24A 194 7.13e-18 2qibA 231 8.07e-18 2iu5A 195 8.96e-18 1sgmA 191 1.08e-17 a.4.1.9,a.121.1.1 105537,105538 3bqyA 209 1.38e-17 1v7bA 185 2.16e-17 a.4.1.9,a.121.1.1 119861,119862 2guhA 214 2.19e-17 3bjbA 207 2.50e-17 1a6i 217 2.79e-17 2fd5A 180 3.20e-17 a.4.1.9,a.121.1.1 133291,133292 2d6yA 202 3.41e-17 a.4.1.9,a.121.1.1 131313,131314 2rekA 199 4.36e-17 1t33A 224 5.02e-17 a.4.1.9,a.121.1.1 106295,106296 3bniA 229 5.16e-17 2vprA 207 5.57e-17 1zk8A 183 5.90e-17 a.4.1.9,a.121.1.1 125177,125178 2qwtA 196 8.78e-17 2gfnA 209 3.64e-16 a.4.1.9,a.121.1.1 135101,135102 2oi8A 216 3.71e-16 2qkoA 215 5.26e-16 2zcmA 192 1.48e-15 1z0xA 220 1.81e-15 a.4.1.9,a.121.1.1 124334,124335 2oerA 214 5.84e-15 2g7lA 243 8.59e-15 a.4.1.9,a.121.1.1 134734,134735 2tct 207 1.51e-14 2optA 234 3.76e-14 2hxoA 237 4.60e-14 2id3A 225 1.68e-13 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 1.04e-10 a.4.1.9,a.121.1.1 134732,134733 2ev0A 142 1.865 a.4.5.24,a.76.1.1 132413,132414 1c0wA 225 2.277 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2dt5A 211 2.594 a.4.5.38,c.2.1.12 131708,131709 2jn6A 97 2.845 1w07A 659 3.069 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1pdnC 128 3.618 a.4.1.5 16047 2pg4A 95 3.795 3bbyA 215 4.047 2bnmA 198 4.219 a.35.1.3,b.82.1.10 128835,128836 1a5t 334 4.286 2oxoA 103 4.400 1f3aA 222 4.595 a.45.1.1,c.47.1.5 17701,32995 1xcbA 211 4.876 a.4.5.38,c.2.1.12 109552,109553 1on2A 142 5.456 a.4.5.24,a.76.1.1 87103,87104 1lccA 51 6.618 a.35.1.5 17110 1ho8A 480 6.756 a.118.1.9 61107 6paxA 133 6.825 a.4.1.5,a.4.1.5 64758,64759 1hlvA 131 7.886 a.4.1.7,a.4.1.7 65854,65855 1gulA 222 8.113 a.45.1.1,c.47.1.5 17675,32969 1gwcA 230 8.534 a.45.1.1,c.47.1.5 70660,70661 2bjcA 62 9.041 a.35.1.5 128620 3bzcA 785 9.284 2qq9A 226 9.693 1cjgA 62 10.82 a.35.1.5 17112 1tadA 324 11.82 a.66.1.1,c.37.1.8 18194,32077 1gseA 221 11.99 a.45.1.1,c.47.1.5 17667,32961 2pjpA 121 12.02 1jkoC 52 12.23 a.4.1.2 66809 1vf1A 229 12.38 2gsqA 202 12.41 a.45.1.1,c.47.1.5 17715,33009 1oqyA 368 15.19 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1bi0 226 15.23 1k3yA 221 18.32 a.45.1.1,c.47.1.5 77245,77246 1m0uA 249 18.38 a.45.1.1,c.47.1.5 78359,78360 1wpkA 146 20.45 2ig3A 127 20.89 2hpkA 208 20.90 1fseA 74 20.96 a.4.6.2 60000 1oe8A 211 21.34 a.45.1.1,c.47.1.5 86905,86906 1k3kA 158 22.68 f.1.4.1 72017 1bl0A 129 23.10 a.4.1.8,a.4.1.8 16053,16054 1zljA 78 23.24 3b7hA 78 23.45 1neqA 74 23.72 a.35.1.2 17063 1b48A 221 24.78 a.45.1.1,c.47.1.5 17703,32997 1b1bA 140 24.82 a.4.5.24,a.76.1.1 16215,18421 1yn9A 169 26.44 1s7oA 113 27.40 a.4.13.3 105354 3bs3A 76 27.69 1pgtA 210 27.70 a.45.1.1,c.47.1.5 17515,32809 1k0dA 260 28.96 a.45.1.1,c.47.1.5 67930,67931 1hg5A 289 29.57 a.7.8.2,a.118.9.3 90360,90361 1je8A 82 29.59 a.4.6.2 77108 2fbkA 181 29.92 a.4.5.28 133247 1p4wA 99 31.46 a.4.6.2 87783 1wsuA 124 31.53 a.4.5.35,a.4.5.35 121245,121246 2dtrA 226 31.53 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1oktA 211 33.35 a.45.1.1,c.47.1.5 93272,93273 1iyhA 198 35.38 a.45.1.1,c.47.1.5 83790,83791 1iqpA 327 36.02 a.80.1.1,c.37.1.20 62649,62650 1ret 43 36.41 1g73A 162 37.30 a.7.4.1 16332 1fx7A 230 39.27 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1jj2U 70 41.51 a.2.2.1 63106 1u8bA 133 44.62 2scpA 174 44.96 a.39.1.5 17256 1rzsA 61 45.74 a.35.1.2 105139 2aelA 374 46.36 3bct 457 46.54 1fr2A 86 47.82 a.28.2.1 83256 2bkmA 128 48.33 2cro 71 49.34 1lea 84 49.72 1kxrA 339 51.85 d.3.1.3 73175 1vz0A 230 52.76 a.4.14.1,d.268.1.1 108929,108930 1b0nA 111 53.12 a.34.1.1,a.35.1.3 17001,17064 2blfA 373 54.84 1utxA 66 54.86 a.35.1.3 108034 2croA 71 55.56 a.35.1.2 17038 1pveA 72 55.59 a.189.1.1 104322 1tlqA 189 56.63 a.195.1.1 107134 1fewA 184 57.04 a.7.4.1 16334 1nhyA 219 57.95 a.45.1.1,c.47.1.5 80520,80521 2q7eA 291 60.53 2auwA 170 63.01 a.35.1.10,d.331.1.1 127339,127340 2cdnA 201 63.05 c.37.1.1 130289 1oyiA 82 66.70 a.4.5.19 93729 1y9qA 192 66.75 a.35.1.8,b.82.1.15 116592,116593 2q7wA 396 68.28 1gcvA 140 69.40 a.1.1.2 15410 1cei 94 69.48 1ehiA 377 70.42 c.30.1.2,d.142.1.1 31716,41484 1r69A 69 70.53 a.35.1.2 17028 2on5A 206 73.69 2ivmA 150 73.82 1hcrA 52 75.84 a.4.1.2 16020 1f5tA 121 76.44 a.4.5.24,a.76.1.1 16203,18409 2a9dA 372 77.38 b.1.18.6,d.176.1.1 126431,126432 1s69A 124 78.84 a.1.1.1 105305 1xsvA 113 80.79 a.4.13.3 116003 2p62A 241 80.96 2ictA 94 84.01 1dugA 234 84.04 a.45.1.1,c.47.1.5 17718,33012 1g6wA 261 84.76 a.45.1.1,c.47.1.5 17751,33045 1vpwA 340 87.46 a.35.1.5,c.93.1.1 17087,35680 1resA 43 88.58 a.4.1.2 16023 1rp3A 239 88.58 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 1efaA 333 88.74 a.35.1.5,c.93.1.1 17106,35691 2j3tD 219 88.98