# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 3.82e-20 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 3.88e-20 3bruA 222 5.39e-20 2f07A 197 6.05e-20 2id6A 202 9.30e-20 3bhqA 211 9.38e-20 1rktA 205 9.57e-20 a.4.1.9,a.121.1.1 97623,97624 2g7sA 194 1.15e-19 a.4.1.9,a.121.1.1 134737,134738 1zkgA 212 1.24e-19 a.4.1.9,a.121.1.1 125194,125195 2ibdA 204 1.34e-19 2i10A 202 1.54e-19 a.4.1.9,a.121.1.1 136960,136961 3bcgA 215 1.56e-19 1pb6A 212 1.69e-19 a.4.1.9,a.121.1.1 88017,88018 2uxuA 210 1.72e-19 3cwrA 208 1.95e-19 2rasA 212 2.26e-19 1z77A 200 2.55e-19 a.4.1.9,a.121.1.1 124588,124589 2hyjA 200 2.93e-19 2g3bA 208 3.97e-19 a.4.1.9,a.121.1.1 134558,134559 2iekA 200 4.47e-19 3ccyA 203 5.45e-19 3crjA 199 5.47e-19 1t56A 216 6.30e-19 a.4.1.9,a.121.1.1 106428,106429 2fx0A 201 6.56e-19 a.4.1.9,a.121.1.1 134269,134270 2genA 197 8.67e-19 a.4.1.9,a.121.1.1 135062,135063 2qtqA 213 9.90e-19 2nx4A 194 1.10e-18 2jj7A 186 1.12e-18 2iaiA 230 1.16e-18 2fq4A 192 1.26e-18 a.4.1.9,a.121.1.1 133937,133938 2qcoA 210 1.39e-18 1qvtA 194 1.47e-18 a.4.1.9,a.121.1.1 104602,104603 2dg7A 195 1.48e-18 2hytA 197 1.96e-18 1jt6A 188 2.05e-18 a.4.1.9,a.121.1.1 67247,67248 3cjdA 198 3.32e-18 2of7A 260 3.41e-18 2zb9A 214 3.60e-18 1ui5A 215 4.14e-18 a.4.1.9,a.121.1.1 107856,107857 2raeA 207 4.32e-18 3cdlA 203 4.78e-18 3b81A 203 6.53e-18 2fbqA 235 9.45e-18 a.4.1.9,a.121.1.1 133256,133257 3c2bA 221 1.58e-17 3colA 196 2.01e-17 2q24A 194 2.27e-17 2hkuA 215 2.44e-17 2np5A 203 2.47e-17 a.4.1.9,a.121.1.1 138424,138425 2yveA 185 3.19e-17 2dg8A 193 3.92e-17 2qibA 231 4.78e-17 1sgmA 191 5.11e-17 a.4.1.9,a.121.1.1 105537,105538 2o7tA 199 5.18e-17 2eh3A 179 5.63e-17 2d6yA 202 1.15e-16 a.4.1.9,a.121.1.1 131313,131314 2iu5A 195 1.30e-16 2rekA 199 1.78e-16 2guhA 214 1.81e-16 2fd5A 180 1.84e-16 a.4.1.9,a.121.1.1 133291,133292 2o7oA 207 1.96e-16 a.4.1.9,a.121.1.1 138930,138931 3bqyA 209 2.04e-16 1a6i 217 2.83e-16 2qwtA 196 3.19e-16 1t33A 224 3.23e-16 a.4.1.9,a.121.1.1 106295,106296 3bjbA 207 3.58e-16 3bniA 229 3.82e-16 1v7bA 185 4.73e-16 a.4.1.9,a.121.1.1 119861,119862 1zk8A 183 5.35e-16 a.4.1.9,a.121.1.1 125177,125178 2gfnA 209 5.74e-16 a.4.1.9,a.121.1.1 135101,135102 2vprA 207 9.99e-16 2oi8A 216 3.85e-15 2zcmA 192 8.80e-15 2qkoA 215 9.46e-15 1z0xA 220 1.85e-14 a.4.1.9,a.121.1.1 124334,124335 2oerA 214 3.68e-14 2g7lA 243 9.27e-14 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 1.52e-13 2tct 207 1.71e-13 2id3A 225 1.97e-13 a.4.1.9,a.121.1.1 137261,137262 2optA 234 2.30e-13 2g7gA 213 1.36e-10 a.4.1.9,a.121.1.1 134732,134733 2dt5A 211 0.7082 a.4.5.38,c.2.1.12 131708,131709 2pg4A 95 0.9937 2ev0A 142 1.170 a.4.5.24,a.76.1.1 132413,132414 1xcbA 211 1.332 a.4.5.38,c.2.1.12 109552,109553 2bnmA 198 1.384 a.35.1.3,b.82.1.10 128835,128836 2jn6A 97 1.821 1hlvA 131 2.064 a.4.1.7,a.4.1.7 65854,65855 6paxA 133 2.333 a.4.1.5,a.4.1.5 64758,64759 1lccA 51 2.361 a.35.1.5 17110 2bjcA 62 2.674 a.35.1.5 128620 1on2A 142 3.014 a.4.5.24,a.76.1.1 87103,87104 1pdnC 128 3.229 a.4.1.5 16047 1cjgA 62 3.307 a.35.1.5 17112 1jkoC 52 3.350 a.4.1.2 66809 1c0wA 225 3.549 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 3b7hA 78 3.712 1w07A 659 4.290 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 2pjpA 121 4.464 3bbyA 215 4.951 2oxoA 103 5.281 1neqA 74 5.561 a.35.1.2 17063 1fseA 74 5.906 a.4.6.2 60000 1zljA 78 6.428 2hpkA 208 6.476 3bs3A 76 6.886 1p4wA 99 7.430 a.4.6.2 87783 1wpkA 146 8.148 1bi0 226 8.810 1je8A 82 8.921 a.4.6.2 77108 1vf1A 229 9.877 2o3fA 111 10.41 1efaA 333 10.67 a.35.1.5,c.93.1.1 17106,35691 2qq9A 226 10.69 1utxA 66 11.11 a.35.1.3 108034 1b0nA 111 11.45 a.34.1.1,a.35.1.3 17001,17064 2cro 71 11.53 1f3aA 222 11.66 a.45.1.1,c.47.1.5 17701,32995 2auwA 170 11.98 a.35.1.10,d.331.1.1 127339,127340 1s7oA 113 12.04 a.4.13.3 105354 2croA 71 12.55 a.35.1.2 17038 1b1bA 140 13.01 a.4.5.24,a.76.1.1 16215,18421 1wsuA 124 13.76 a.4.5.35,a.4.5.35 121245,121246 1vz0A 230 13.77 a.4.14.1,d.268.1.1 108929,108930 1lea 84 14.35 1a5t 334 14.40 1y9qA 192 14.48 a.35.1.8,b.82.1.15 116592,116593 1k3yA 221 14.51 a.45.1.1,c.47.1.5 77245,77246 1gulA 222 15.49 a.45.1.1,c.47.1.5 17675,32969 3bzcA 785 15.50 1gwcA 230 15.70 a.45.1.1,c.47.1.5 70660,70661 1r69A 69 16.17 a.35.1.2 17028 2ivmA 150 17.17 2r1jL 68 17.74 1adrA 76 18.99 a.35.1.2 17042 2ig3A 127 19.02 1jftA 340 21.24 a.35.1.5,c.93.1.1 66652,66653 2ictA 94 22.39 1u8bA 133 22.66 1y0uA 96 22.89 a.4.5.5 116310 1r69 69 22.97 2b5aA 77 23.35 a.35.1.3 127882 2fjrA 189 23.47 1ho8A 480 24.03 a.118.1.9 61107 1tadA 324 24.50 a.66.1.1,c.37.1.8 18194,32077 1rzsA 61 25.23 a.35.1.2 105139 2dtrA 226 28.02 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2h09A 155 29.74 1ret 43 29.88 2a9dA 372 30.33 b.1.18.6,d.176.1.1 126431,126432 1y7yA 74 30.34 a.35.1.3 122729 2blfA 373 31.22 3cloA 258 31.96 1ub9A 100 33.12 a.4.5.28 99159 1fx7A 230 33.23 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1oe8A 211 33.37 a.45.1.1,c.47.1.5 86905,86906 1f5tA 121 33.79 a.4.5.24,a.76.1.1 16203,18409 2ebyA 113 33.97 2cfxA 144 34.77 a.4.5.32,d.58.4.2 130395,130396 1r1uA 106 35.07 a.4.5.5 104771 2dbbA 151 36.56 2scpA 174 37.15 a.39.1.5 17256 1zgwA 139 37.29 1k78A 149 37.47 a.4.1.5,a.4.1.5 68255,68256 1wdvA 152 37.58 d.116.1.1 114539 3cecA 104 38.44 1jj2U 70 38.84 a.2.2.1 63106 1bl0A 129 39.16 a.4.1.8,a.4.1.8 16053,16054 1oktA 211 39.92 a.45.1.1,c.47.1.5 93272,93273 1qpzA 340 40.14 a.35.1.5,c.93.1.1 17097,35673 1vpwA 340 40.32 a.35.1.5,c.93.1.1 17087,35680 2qz8A 149 41.19 1gseA 221 41.94 a.45.1.1,c.47.1.5 17667,32961 1sfxA 109 42.27 a.4.5.50 105505 2h27A 73 43.22 a.4.13.2 135993 2cg4A 152 43.72 a.4.5.32,d.58.4.2 130417,130418 1oqyA 368 44.83 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1j5yA 187 45.96 a.4.5.1,d.94.2.1 71592,71593 1sedA 117 46.92 a.219.1.1 105449 2o0yA 260 47.79 2g7uA 257 47.81 1l7vA 326 48.66 f.22.1.1 73672 1oyiA 82 48.80 a.4.5.19 93729 1lliA 92 49.11 a.35.1.2 17025 2vd8A 391 49.22 3bct 457 49.37 2ia2A 265 49.53 2q7eA 291 49.77 2q7wA 396 49.88 2e7xA 150 50.04 1ehiA 377 51.13 c.30.1.2,d.142.1.1 31716,41484 1u2wA 122 51.67 a.4.5.5 119487 1smtA 122 55.02 a.4.5.5 16109 2gqqA 163 56.20 1r1tA 122 56.41 a.4.5.5 104769 1iqpA 327 56.65 a.80.1.1,c.37.1.20 62649,62650 3bwgA 239 57.35 1tc3C 51 58.39 a.4.1.2 16025 1b48A 221 59.15 a.45.1.1,c.47.1.5 17703,32997 3co8A 380 59.64 2pn6A 150 59.91 1vfsA 386 60.01 b.49.2.2,c.1.6.1 108584,108585 1k3kA 158 62.13 f.1.4.1 72017 1k0dA 260 63.14 a.45.1.1,c.47.1.5 67930,67931 1biaA 321 64.36 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 2d0eA 407 64.85 1jhgA 101 66.05 a.4.12.1 19009 1rp3A 239 66.31 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 1u3eM 174 66.57 d.4.1.3,d.285.1.1 107640,107641 2rn7A 108 66.89 2nrlA 147 66.98 1l3lA 234 68.63 a.4.6.2,d.110.5.1 73541,73542 2cyyA 151 68.75 a.4.5.32,d.58.4.2 131028,131029 1trrA 107 69.42 a.4.12.1 19017 2e60A 101 69.73 1a3gA 308 69.76 e.17.1.1 43286 1gcvA 140 70.89 a.1.1.2 15410 1m0uA 249 71.69 a.45.1.1,c.47.1.5 78359,78360 3c8yA 574 71.99 1iyeA 309 72.38 e.17.1.1 83786 1resA 43 73.26 a.4.1.2 16023 1m12A 84 73.47 a.64.1.1 84745 2yxoA 267 74.77 1hcrA 52 74.81 a.4.1.2 16020 1ka2A 499 75.37 d.92.1.5 77305 1anf 370 78.69 1m1zA 513 78.94 c.26.2.1,d.153.1.1 78457,78458 1arsA 396 79.61 c.67.1.1 34287 2is9A 204 79.69 2p5vA 162 80.07 1xsvA 113 83.11 a.4.13.3 116003 1i1gA 141 83.45 a.4.5.32,d.58.4.2 65982,65983 1mkmA 249 84.53 a.4.5.33,d.110.2.2 79242,79243 1es4A 262 84.99 e.3.1.1 42683 1mc3A 296 89.49 c.68.1.6 78943