# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 1.60e-22 a.4.1.9,a.121.1.1 100720,100721 3bhqA 211 2.91e-22 2id6A 202 3.12e-22 1rktA 205 3.27e-22 a.4.1.9,a.121.1.1 97623,97624 1zkgA 212 3.60e-22 a.4.1.9,a.121.1.1 125194,125195 2f07A 197 5.64e-22 2pbxA 203 6.11e-22 2uxuA 210 6.89e-22 3cwrA 208 9.34e-22 3ccyA 203 1.31e-21 2ibdA 204 1.39e-21 2hyjA 200 1.39e-21 3bcgA 215 1.53e-21 2rasA 212 1.58e-21 1z77A 200 1.61e-21 a.4.1.9,a.121.1.1 124588,124589 2g7sA 194 1.75e-21 a.4.1.9,a.121.1.1 134737,134738 3bruA 222 1.77e-21 2qcoA 210 2.14e-21 2g3bA 208 2.35e-21 a.4.1.9,a.121.1.1 134558,134559 2iekA 200 2.51e-21 1pb6A 212 3.35e-21 a.4.1.9,a.121.1.1 88017,88018 3crjA 199 4.73e-21 1t56A 216 4.83e-21 a.4.1.9,a.121.1.1 106428,106429 2i10A 202 5.55e-21 a.4.1.9,a.121.1.1 136960,136961 2fx0A 201 6.06e-21 a.4.1.9,a.121.1.1 134269,134270 1qvtA 194 9.75e-21 a.4.1.9,a.121.1.1 104602,104603 2jj7A 186 1.20e-20 1jt6A 188 1.29e-20 a.4.1.9,a.121.1.1 67247,67248 2dg7A 195 1.35e-20 2qtqA 213 1.64e-20 2nx4A 194 1.68e-20 2fq4A 192 1.80e-20 a.4.1.9,a.121.1.1 133937,133938 2raeA 207 2.07e-20 2iaiA 230 2.18e-20 2genA 197 2.20e-20 a.4.1.9,a.121.1.1 135062,135063 2of7A 260 2.95e-20 2hytA 197 3.24e-20 3cdlA 203 3.42e-20 2zb9A 214 3.91e-20 1ui5A 215 4.54e-20 a.4.1.9,a.121.1.1 107856,107857 3b81A 203 6.27e-20 3c2bA 221 8.78e-20 2np5A 203 1.51e-19 a.4.1.9,a.121.1.1 138424,138425 2fbqA 235 1.80e-19 a.4.1.9,a.121.1.1 133256,133257 2hkuA 215 1.95e-19 2o7tA 199 2.56e-19 3colA 196 3.02e-19 2yveA 185 3.37e-19 2eh3A 179 3.56e-19 2dg8A 193 3.82e-19 2qibA 231 4.25e-19 3cjdA 198 4.49e-19 2q24A 194 4.77e-19 2iu5A 195 5.85e-19 2o7oA 207 6.65e-19 a.4.1.9,a.121.1.1 138930,138931 1sgmA 191 1.68e-18 a.4.1.9,a.121.1.1 105537,105538 2rekA 199 1.76e-18 3bqyA 209 2.05e-18 3bniA 229 2.21e-18 1v7bA 185 2.25e-18 a.4.1.9,a.121.1.1 119861,119862 2guhA 214 2.70e-18 3bjbA 207 2.75e-18 2d6yA 202 2.82e-18 a.4.1.9,a.121.1.1 131313,131314 1a6i 217 3.26e-18 2fd5A 180 5.47e-18 a.4.1.9,a.121.1.1 133291,133292 1t33A 224 6.35e-18 a.4.1.9,a.121.1.1 106295,106296 2vprA 207 6.54e-18 2gfnA 209 9.68e-18 a.4.1.9,a.121.1.1 135101,135102 2qwtA 196 1.17e-17 1zk8A 183 1.30e-17 a.4.1.9,a.121.1.1 125177,125178 2oi8A 216 4.51e-17 2qkoA 215 6.94e-17 1z0xA 220 9.13e-17 a.4.1.9,a.121.1.1 124334,124335 2zcmA 192 5.58e-16 2oerA 214 8.34e-16 2g7lA 243 1.56e-15 a.4.1.9,a.121.1.1 134734,134735 2tct 207 3.33e-15 2hxoA 237 3.83e-15 2optA 234 4.50e-15 2id3A 225 1.75e-14 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 9.41e-12 a.4.1.9,a.121.1.1 134732,134733 3bbyA 215 1.345 2ev0A 142 1.362 a.4.5.24,a.76.1.1 132413,132414 2oxoA 103 1.454 1c0wA 225 1.631 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 1a5t 334 2.770 2dt5A 211 3.268 a.4.5.38,c.2.1.12 131708,131709 2pg4A 95 3.443 1lccA 51 3.807 a.35.1.5 17110 2bnmA 198 3.987 a.35.1.3,b.82.1.10 128835,128836 2jn6A 97 4.182 1gulA 222 4.514 a.45.1.1,c.47.1.5 17675,32969 1gwcA 230 4.752 a.45.1.1,c.47.1.5 70660,70661 2bjcA 62 5.093 a.35.1.5 128620 1on2A 142 5.748 a.4.5.24,a.76.1.1 87103,87104 1cjgA 62 6.087 a.35.1.5 17112 1hlvA 131 6.605 a.4.1.7,a.4.1.7 65854,65855 2qq9A 226 9.572 2gsqA 202 9.707 a.45.1.1,c.47.1.5 17715,33009 1f3aA 222 9.893 a.45.1.1,c.47.1.5 17701,32995 6paxA 133 10.71 a.4.1.5,a.4.1.5 64758,64759 1bi0 226 10.82 1tadA 324 10.85 a.66.1.1,c.37.1.8 18194,32077 1w07A 659 11.68 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1pdnC 128 11.74 a.4.1.5 16047 1xcbA 211 12.00 a.4.5.38,c.2.1.12 109552,109553 3bzcA 785 12.16 1yn9A 169 14.48 2bkmA 128 14.69 1fseA 74 14.79 a.4.6.2 60000 1wsuA 124 15.25 a.4.5.35,a.4.5.35 121245,121246 1ngkA 128 15.94 a.1.1.1 85673 1oe8A 211 16.60 a.45.1.1,c.47.1.5 86905,86906 3b7hA 78 17.38 1m0uA 249 19.03 a.45.1.1,c.47.1.5 78359,78360 3bs3A 76 19.15 1neqA 74 19.63 a.35.1.2 17063 2o3fA 111 20.18 1gseA 221 20.48 a.45.1.1,c.47.1.5 17667,32961 2hpkA 208 20.98 1oqyA 368 22.35 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1k0dA 260 23.03 a.45.1.1,c.47.1.5 67930,67931 1jkoC 52 23.63 a.4.1.2 66809 1iqpA 327 25.51 a.80.1.1,c.37.1.20 62649,62650 1zr5A 214 26.75 c.50.1.2 125525 1k3yA 221 27.14 a.45.1.1,c.47.1.5 77245,77246 1s7oA 113 27.38 a.4.13.3 105354 1zljA 78 28.29 1p4wA 99 28.51 a.4.6.2 87783 2pjpA 121 31.44 1ho8A 480 31.47 a.118.1.9 61107 1nhyA 219 33.30 a.45.1.1,c.47.1.5 80520,80521 2aelA 374 33.56 1b1bA 140 34.16 a.4.5.24,a.76.1.1 16215,18421 1utxA 66 34.82 a.35.1.3 108034 1b0nA 111 34.99 a.34.1.1,a.35.1.3 17001,17064 1hg5A 289 36.53 a.7.8.2,a.118.9.3 90360,90361 1v2aA 210 37.36 a.45.1.1,c.47.1.5 100263,100264 1s69A 124 37.71 a.1.1.1 105305 2on5A 206 40.19 1fr2A 86 41.01 a.28.2.1 83256 2ve3A 444 41.06 1pveA 72 42.67 a.189.1.1 104322 2ictA 94 43.33 2vd8A 391 43.44 1l7vA 326 46.05 f.22.1.1 73672 2scpA 174 46.19 a.39.1.5 17256 2h27A 73 46.77 a.4.13.2 135993 1vf1A 229 47.03 1vz0A 230 47.46 a.4.14.1,d.268.1.1 108929,108930 1jr3A 373 49.76 a.80.1.1,c.37.1.20 63245,63246 1w3wA 327 49.97 1je8A 82 54.28 a.4.6.2 77108 2oa6A 320 55.48 1g6wA 261 55.57 a.45.1.1,c.47.1.5 17751,33045 2olpA 152 55.70 2cro 71 55.81 2q88A 257 56.10 1rzsA 61 56.47 a.35.1.2 105139 1alvA 173 56.89 a.39.1.8 17370 2is9A 204 58.34 1vfsA 386 59.00 b.49.2.2,c.1.6.1 108584,108585 1h2eA 207 59.25 c.60.1.1 70857 2b2hA 399 59.84 2q7wA 396 60.22 1f5tA 121 61.81 a.4.5.24,a.76.1.1 16203,18409 2dtrA 226 62.09 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1ret 43 62.39 1xqrA 296 62.86 a.118.1.21 122241 2auwA 170 63.12 a.35.1.10,d.331.1.1 127339,127340 1gcvA 140 63.16 a.1.1.2 15410 1i4aA 318 64.11 a.65.1.1 61681 1glqA 209 64.76 a.45.1.1,c.47.1.5 17588,32882 2croA 71 65.35 a.35.1.2 17038 2a9dA 372 65.81 b.1.18.6,d.176.1.1 126431,126432 1hqoA 258 65.84 a.45.1.1,c.47.1.5 17749,33043 2gauA 232 66.50 a.4.5.4,b.82.3.2 134894,134895 1wdvA 152 66.52 d.116.1.1 114539 1fx7A 230 67.14 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2hyvA 308 67.35 3c8yA 574 67.54 2e60A 101 67.55 1bl0A 129 68.55 a.4.1.8,a.4.1.8 16053,16054 1aw9A 216 69.68 a.45.1.1,c.47.1.5 17736,33030 2yxoA 267 69.80 1u8bA 133 73.20 2bk6A 156 73.42 a.25.1.1 128660 1emvA 86 73.56 a.28.2.1 16944 1dm1A 146 73.83 a.1.1.2 15153 1es4A 262 74.88 e.3.1.1 42683 1r69A 69 74.94 a.35.1.2 17028 1wpkA 146 76.27 1b48A 221 76.33 a.45.1.1,c.47.1.5 17703,32997 1a0eA 443 77.28 c.1.15.3 29537 1jj2U 70 77.58 a.2.2.1 63106 1upvA 257 78.24 a.123.1.1 113398 1qpzA 340 78.54 a.35.1.5,c.93.1.1 17097,35673 1unkA 87 79.27 a.28.2.1 16935 1k2xA 177 81.13 d.153.1.5 90929 1mvwB 145 81.67 i.15.1.1 79524 2jfkA 433 82.55 1ebbA 202 82.64 c.60.1.1 64900 1rp3A 239 83.31 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 1dlyA 164 84.99 a.1.1.1 14983 2blfA 373 85.09 3d0cA 314 85.42 1oktA 211 85.62 a.45.1.1,c.47.1.5 93272,93273 1hcrA 52 86.08 a.4.1.2 16020 1ft9A 222 86.28 a.4.5.4,b.82.3.1 16107,28131 2fbkA 181 87.12 a.4.5.28 133247 2cohA 202 87.85 a.4.5.4,b.82.3.2 130677,130678 1iyhA 198 88.76 a.45.1.1,c.47.1.5 83790,83791