# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 4.33e-23 a.4.1.9,a.121.1.1 100720,100721 2id6A 202 7.00e-23 1zkgA 212 7.76e-23 a.4.1.9,a.121.1.1 125194,125195 3bhqA 211 7.85e-23 2f07A 197 9.38e-23 1rktA 205 1.01e-22 a.4.1.9,a.121.1.1 97623,97624 2pbxA 203 1.14e-22 2uxuA 210 1.65e-22 2rasA 212 2.31e-22 3cwrA 208 2.47e-22 2hyjA 200 2.84e-22 3ccyA 203 3.40e-22 3bcgA 215 3.62e-22 3bruA 222 3.64e-22 1z77A 200 3.83e-22 a.4.1.9,a.121.1.1 124588,124589 2ibdA 204 4.10e-22 2g7sA 194 4.33e-22 a.4.1.9,a.121.1.1 134737,134738 2g3bA 208 5.11e-22 a.4.1.9,a.121.1.1 134558,134559 1pb6A 212 6.14e-22 a.4.1.9,a.121.1.1 88017,88018 2qcoA 210 6.27e-22 2iekA 200 6.50e-22 1t56A 216 1.19e-21 a.4.1.9,a.121.1.1 106428,106429 3crjA 199 1.27e-21 2i10A 202 1.40e-21 a.4.1.9,a.121.1.1 136960,136961 2fx0A 201 1.57e-21 a.4.1.9,a.121.1.1 134269,134270 1qvtA 194 2.50e-21 a.4.1.9,a.121.1.1 104602,104603 2dg7A 195 3.71e-21 2jj7A 186 3.73e-21 1jt6A 188 3.87e-21 a.4.1.9,a.121.1.1 67247,67248 2fq4A 192 4.39e-21 a.4.1.9,a.121.1.1 133937,133938 2raeA 207 4.68e-21 2nx4A 194 4.94e-21 2iaiA 230 5.55e-21 2genA 197 5.93e-21 a.4.1.9,a.121.1.1 135062,135063 2qtqA 213 5.98e-21 2of7A 260 6.66e-21 3cdlA 203 7.80e-21 1ui5A 215 8.86e-21 a.4.1.9,a.121.1.1 107856,107857 2hytA 197 1.17e-20 2zb9A 214 1.28e-20 3b81A 203 1.72e-20 3c2bA 221 3.37e-20 2fbqA 235 3.97e-20 a.4.1.9,a.121.1.1 133256,133257 2np5A 203 3.98e-20 a.4.1.9,a.121.1.1 138424,138425 2dg8A 193 5.05e-20 2hkuA 215 6.33e-20 2o7tA 199 7.17e-20 2eh3A 179 7.67e-20 2yveA 185 9.23e-20 3colA 196 1.02e-19 3cjdA 198 1.07e-19 2qibA 231 1.09e-19 2o7oA 207 1.21e-19 a.4.1.9,a.121.1.1 138930,138931 2q24A 194 1.42e-19 2iu5A 195 1.75e-19 3bniA 229 3.61e-19 3bqyA 209 3.98e-19 1sgmA 191 4.02e-19 a.4.1.9,a.121.1.1 105537,105538 2rekA 199 4.47e-19 1a6i 217 6.31e-19 1v7bA 185 7.23e-19 a.4.1.9,a.121.1.1 119861,119862 2guhA 214 7.38e-19 2d6yA 202 7.89e-19 a.4.1.9,a.121.1.1 131313,131314 3bjbA 207 9.48e-19 2fd5A 180 9.92e-19 a.4.1.9,a.121.1.1 133291,133292 2vprA 207 1.48e-18 1t33A 224 2.15e-18 a.4.1.9,a.121.1.1 106295,106296 1zk8A 183 2.71e-18 a.4.1.9,a.121.1.1 125177,125178 2gfnA 209 5.15e-18 a.4.1.9,a.121.1.1 135101,135102 2qwtA 196 5.39e-18 2oi8A 216 1.43e-17 2qkoA 215 1.80e-17 1z0xA 220 3.51e-17 a.4.1.9,a.121.1.1 124334,124335 2zcmA 192 1.78e-16 2oerA 214 3.01e-16 2g7lA 243 5.83e-16 a.4.1.9,a.121.1.1 134734,134735 2optA 234 1.53e-15 2hxoA 237 1.73e-15 2tct 207 1.77e-15 2id3A 225 6.03e-15 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 5.93e-12 a.4.1.9,a.121.1.1 134732,134733 2oxoA 103 0.7904 2ev0A 142 1.103 a.4.5.24,a.76.1.1 132413,132414 3bbyA 215 1.513 1c0wA 225 1.806 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 1a5t 334 2.205 2dt5A 211 2.658 a.4.5.38,c.2.1.12 131708,131709 1gwcA 230 2.888 a.45.1.1,c.47.1.5 70660,70661 1gulA 222 3.198 a.45.1.1,c.47.1.5 17675,32969 1lccA 51 3.874 a.35.1.5 17110 1on2A 142 3.972 a.4.5.24,a.76.1.1 87103,87104 2bnmA 198 4.175 a.35.1.3,b.82.1.10 128835,128836 2jn6A 97 4.404 2bjcA 62 4.650 a.35.1.5 128620 2pg4A 95 4.666 6paxA 133 5.327 a.4.1.5,a.4.1.5 64758,64759 1hlvA 131 6.128 a.4.1.7,a.4.1.7 65854,65855 1cjgA 62 6.295 a.35.1.5 17112 1f3aA 222 9.728 a.45.1.1,c.47.1.5 17701,32995 1xcbA 211 9.739 a.4.5.38,c.2.1.12 109552,109553 2gsqA 202 9.812 a.45.1.1,c.47.1.5 17715,33009 1bi0 226 10.02 3bzcA 785 10.88 1yn9A 169 10.88 2qq9A 226 11.17 1pdnC 128 11.30 a.4.1.5 16047 1tadA 324 12.36 a.66.1.1,c.37.1.8 18194,32077 2bkmA 128 12.89 1wsuA 124 13.08 a.4.5.35,a.4.5.35 121245,121246 2pjpA 121 14.41 1fseA 74 14.73 a.4.6.2 60000 1w07A 659 14.74 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1ngkA 128 16.53 a.1.1.1 85673 3b7hA 78 17.74 3bs3A 76 17.81 1m0uA 249 18.13 a.45.1.1,c.47.1.5 78359,78360 1oe8A 211 18.81 a.45.1.1,c.47.1.5 86905,86906 1gseA 221 19.28 a.45.1.1,c.47.1.5 17667,32961 1oqyA 368 19.89 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 2aelA 374 20.07 2hpkA 208 20.98 1neqA 74 23.18 a.35.1.2 17063 2o3fA 111 23.67 1zr5A 214 23.96 c.50.1.2 125525 1ho8A 480 24.65 a.118.1.9 61107 1k3yA 221 24.90 a.45.1.1,c.47.1.5 77245,77246 1s7oA 113 27.34 a.4.13.3 105354 1hg5A 289 27.57 a.7.8.2,a.118.9.3 90360,90361 1k0dA 260 27.96 a.45.1.1,c.47.1.5 67930,67931 1iqpA 327 28.81 a.80.1.1,c.37.1.20 62649,62650 1jkoC 52 29.02 a.4.1.2 66809 1p4wA 99 30.20 a.4.6.2 87783 1utxA 66 30.30 a.35.1.3 108034 1b0nA 111 31.49 a.34.1.1,a.35.1.3 17001,17064 2ictA 94 35.65 1zljA 78 35.85 1v2aA 210 35.95 a.45.1.1,c.47.1.5 100263,100264 2ve3A 444 37.35 1b1bA 140 39.23 a.4.5.24,a.76.1.1 16215,18421 1s69A 124 40.80 a.1.1.1 105305 2scpA 174 41.59 a.39.1.5 17256 1vf1A 229 42.70 2vd8A 391 43.71 1u8bA 133 44.25 1f5tA 121 45.93 a.4.5.24,a.76.1.1 16203,18409 1vz0A 230 46.75 a.4.14.1,d.268.1.1 108929,108930 2dtrA 226 47.93 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1l7vA 326 48.19 f.22.1.1 73672 2auwA 170 48.83 a.35.1.10,d.331.1.1 127339,127340 1alvA 173 49.19 a.39.1.8 17370 2cro 71 50.30 1fr2A 86 52.22 a.28.2.1 83256 1je8A 82 53.53 a.4.6.2 77108 2q7wA 396 54.65 2on5A 206 54.75 1a0eA 443 56.03 c.1.15.3 29537 1h2eA 207 56.80 c.60.1.1 70857 1b48A 221 58.38 a.45.1.1,c.47.1.5 17703,32997 2b2hA 399 59.27 2croA 71 59.36 a.35.1.2 17038 1rzsA 61 59.72 a.35.1.2 105139 1gcvA 140 60.53 a.1.1.2 15410 1iyhA 198 60.68 a.45.1.1,c.47.1.5 83790,83791 1g6wA 261 60.85 a.45.1.1,c.47.1.5 17751,33045 1wdvA 152 62.33 d.116.1.1 114539 1qpzA 340 62.95 a.35.1.5,c.93.1.1 17097,35673 2olpA 152 62.95 1zgwA 139 63.59 2h27A 73 63.83 a.4.13.2 135993 1nfp 228 64.33 1vfsA 386 65.61 b.49.2.2,c.1.6.1 108584,108585 1wpkA 146 65.64 1fx7A 230 65.93 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1bl0A 129 66.32 a.4.1.8,a.4.1.8 16053,16054 1ebbA 202 68.22 c.60.1.1 64900 2a9dA 372 68.58 b.1.18.6,d.176.1.1 126431,126432 1r69A 69 68.66 a.35.1.2 17028 1pveA 72 68.98 a.189.1.1 104322 2e60A 101 70.65 2yxoA 267 70.66 1aw9A 216 71.22 a.45.1.1,c.47.1.5 17736,33030 1glqA 209 72.02 a.45.1.1,c.47.1.5 17588,32882 1dm1A 146 72.15 a.1.1.2 15153 1jr3A 373 72.15 a.80.1.1,c.37.1.20 63245,63246 1nhyA 219 73.65 a.45.1.1,c.47.1.5 80520,80521 2z1dA 372 74.20 2q88A 257 74.33 2a8lA 420 74.52 2gauA 232 78.04 a.4.5.4,b.82.3.2 134894,134895 1ret 43 78.09 1cbyA 259 80.15 d.103.1.1 40705 1oktA 211 80.35 a.45.1.1,c.47.1.5 93272,93273 2blfA 373 80.44 1dlyA 164 80.53 a.1.1.1 14983 3bofA 566 81.79 1nfpA 228 83.18 c.1.16.2 29555 1ft9A 222 83.39 a.4.5.4,b.82.3.1 16107,28131 1xnfA 275 84.17 a.118.8.1 115580 2r1jL 68 84.19 2gkmA 136 84.20 3bct 457 85.36 2ebyA 113 87.59 1xqrA 296 87.59 a.118.1.21 122241 2d1eA 248 87.59 1kxrA 339 88.09 d.3.1.3 73175