# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 1.67e-22 a.4.1.9,a.121.1.1 100720,100721 3bhqA 211 2.47e-22 2id6A 202 2.49e-22 1rktA 205 2.59e-22 a.4.1.9,a.121.1.1 97623,97624 1zkgA 212 2.63e-22 a.4.1.9,a.121.1.1 125194,125195 2pbxA 203 3.64e-22 2f07A 197 4.80e-22 2uxuA 210 6.07e-22 1z77A 200 1.22e-21 a.4.1.9,a.121.1.1 124588,124589 3cwrA 208 1.23e-21 3ccyA 203 1.24e-21 2ibdA 204 1.41e-21 2hyjA 200 1.52e-21 2rasA 212 1.52e-21 3bruA 222 1.56e-21 2g7sA 194 1.64e-21 a.4.1.9,a.121.1.1 134737,134738 3bcgA 215 1.72e-21 2qcoA 210 1.79e-21 2iekA 200 2.32e-21 2g3bA 208 2.58e-21 a.4.1.9,a.121.1.1 134558,134559 1pb6A 212 2.69e-21 a.4.1.9,a.121.1.1 88017,88018 3crjA 199 3.19e-21 2i10A 202 4.30e-21 a.4.1.9,a.121.1.1 136960,136961 1t56A 216 4.36e-21 a.4.1.9,a.121.1.1 106428,106429 1qvtA 194 5.97e-21 a.4.1.9,a.121.1.1 104602,104603 2fx0A 201 6.86e-21 a.4.1.9,a.121.1.1 134269,134270 1jt6A 188 9.00e-21 a.4.1.9,a.121.1.1 67247,67248 2qtqA 213 1.45e-20 2dg7A 195 1.51e-20 2jj7A 186 1.68e-20 2fq4A 192 1.79e-20 a.4.1.9,a.121.1.1 133937,133938 2genA 197 1.87e-20 a.4.1.9,a.121.1.1 135062,135063 2raeA 207 1.88e-20 2nx4A 194 1.95e-20 2iaiA 230 2.48e-20 2of7A 260 2.51e-20 2zb9A 214 3.33e-20 2hytA 197 3.41e-20 1ui5A 215 4.67e-20 a.4.1.9,a.121.1.1 107856,107857 3cdlA 203 5.26e-20 3b81A 203 6.60e-20 3c2bA 221 1.25e-19 2fbqA 235 1.30e-19 a.4.1.9,a.121.1.1 133256,133257 2np5A 203 1.41e-19 a.4.1.9,a.121.1.1 138424,138425 2hkuA 215 2.20e-19 2dg8A 193 2.40e-19 2yveA 185 2.45e-19 2eh3A 179 3.59e-19 2qibA 231 3.61e-19 3cjdA 198 3.80e-19 3colA 196 3.83e-19 2o7tA 199 3.88e-19 2q24A 194 4.87e-19 2o7oA 207 5.06e-19 a.4.1.9,a.121.1.1 138930,138931 2iu5A 195 5.80e-19 1sgmA 191 9.73e-19 a.4.1.9,a.121.1.1 105537,105538 2rekA 199 1.24e-18 3bniA 229 1.44e-18 1v7bA 185 1.85e-18 a.4.1.9,a.121.1.1 119861,119862 3bqyA 209 2.08e-18 2guhA 214 2.11e-18 1a6i 217 2.31e-18 3bjbA 207 2.46e-18 2d6yA 202 2.65e-18 a.4.1.9,a.121.1.1 131313,131314 2fd5A 180 3.61e-18 a.4.1.9,a.121.1.1 133291,133292 2vprA 207 4.58e-18 1t33A 224 4.81e-18 a.4.1.9,a.121.1.1 106295,106296 2qwtA 196 8.84e-18 2gfnA 209 9.30e-18 a.4.1.9,a.121.1.1 135101,135102 1zk8A 183 1.04e-17 a.4.1.9,a.121.1.1 125177,125178 2oi8A 216 4.12e-17 2qkoA 215 6.71e-17 1z0xA 220 7.04e-17 a.4.1.9,a.121.1.1 124334,124335 2zcmA 192 5.69e-16 2oerA 214 7.31e-16 2g7lA 243 1.98e-15 a.4.1.9,a.121.1.1 134734,134735 2tct 207 2.65e-15 2hxoA 237 4.47e-15 2optA 234 4.81e-15 2id3A 225 2.35e-14 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 9.50e-12 a.4.1.9,a.121.1.1 134732,134733 2oxoA 103 1.292 2ev0A 142 1.834 a.4.5.24,a.76.1.1 132413,132414 3bbyA 215 1.956 1a5t 334 2.660 1c0wA 225 2.852 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2pg4A 95 2.875 2dt5A 211 3.144 a.4.5.38,c.2.1.12 131708,131709 1gwcA 230 3.240 a.45.1.1,c.47.1.5 70660,70661 2jn6A 97 3.338 1lccA 51 3.570 a.35.1.5 17110 1gulA 222 4.357 a.45.1.1,c.47.1.5 17675,32969 2bjcA 62 4.473 a.35.1.5 128620 2bnmA 198 4.681 a.35.1.3,b.82.1.10 128835,128836 1cjgA 62 4.865 a.35.1.5 17112 1hlvA 131 5.845 a.4.1.7,a.4.1.7 65854,65855 6paxA 133 7.062 a.4.1.5,a.4.1.5 64758,64759 1on2A 142 7.807 a.4.5.24,a.76.1.1 87103,87104 1xcbA 211 9.134 a.4.5.38,c.2.1.12 109552,109553 2gsqA 202 10.19 a.45.1.1,c.47.1.5 17715,33009 1f3aA 222 11.51 a.45.1.1,c.47.1.5 17701,32995 1yn9A 169 12.25 1pdnC 128 12.77 a.4.1.5 16047 1w07A 659 12.86 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1bi0 226 13.29 1wsuA 124 13.34 a.4.5.35,a.4.5.35 121245,121246 1fseA 74 13.36 a.4.6.2 60000 2qq9A 226 14.87 1tadA 324 15.12 a.66.1.1,c.37.1.8 18194,32077 1ngkA 128 15.76 a.1.1.1 85673 3bzcA 785 17.11 1jkoC 52 17.92 a.4.1.2 66809 3b7hA 78 17.94 1oe8A 211 18.53 a.45.1.1,c.47.1.5 86905,86906 2aelA 374 18.87 1neqA 74 18.93 a.35.1.2 17063 3bs3A 76 19.49 1zr5A 214 19.69 c.50.1.2 125525 2pjpA 121 21.44 1m0uA 249 22.03 a.45.1.1,c.47.1.5 78359,78360 1gseA 221 22.59 a.45.1.1,c.47.1.5 17667,32961 1oqyA 368 22.69 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1k3yA 221 22.81 a.45.1.1,c.47.1.5 77245,77246 1s7oA 113 23.21 a.4.13.3 105354 2hpkA 208 23.64 2bkmA 128 24.63 1p4wA 99 24.82 a.4.6.2 87783 2o3fA 111 25.37 1zljA 78 27.99 2ve3A 444 29.05 1k0dA 260 29.12 a.45.1.1,c.47.1.5 67930,67931 1utxA 66 31.09 a.35.1.3 108034 1fr2A 86 33.01 a.28.2.1 83256 2q7wA 396 33.12 1iqpA 327 34.04 a.80.1.1,c.37.1.20 62649,62650 2h27A 73 35.81 a.4.13.2 135993 2scpA 174 35.88 a.39.1.5 17256 1b0nA 111 36.46 a.34.1.1,a.35.1.3 17001,17064 1ho8A 480 36.73 a.118.1.9 61107 2ictA 94 37.25 2vd8A 391 38.49 1bl0A 129 38.62 a.4.1.8,a.4.1.8 16053,16054 1vz0A 230 40.55 a.4.14.1,d.268.1.1 108929,108930 2on5A 206 40.72 2auwA 170 41.38 a.35.1.10,d.331.1.1 127339,127340 1vf1A 229 42.37 1v2aA 210 42.81 a.45.1.1,c.47.1.5 100263,100264 1je8A 82 43.25 a.4.6.2 77108 1pveA 72 46.02 a.189.1.1 104322 1u8bA 133 47.46 2olpA 152 47.98 2cro 71 50.66 1s69A 124 51.45 a.1.1.1 105305 1ret 43 52.17 1jr3A 373 52.26 a.80.1.1,c.37.1.20 63245,63246 1l7vA 326 52.52 f.22.1.1 73672 1hg5A 289 52.71 a.7.8.2,a.118.9.3 90360,90361 1b1bA 140 54.70 a.4.5.24,a.76.1.1 16215,18421 1nhyA 219 55.02 a.45.1.1,c.47.1.5 80520,80521 1wpkA 146 55.09 1rzsA 61 56.16 a.35.1.2 105139 1f5tA 121 56.66 a.4.5.24,a.76.1.1 16203,18409 1g6wA 261 57.04 a.45.1.1,c.47.1.5 17751,33045 1vfsA 386 57.39 b.49.2.2,c.1.6.1 108584,108585 2bk6A 156 57.40 a.25.1.1 128660 2b2hA 399 57.42 1emvA 86 57.68 a.28.2.1 16944 1iyhA 198 58.26 a.45.1.1,c.47.1.5 83790,83791 2croA 71 58.61 a.35.1.2 17038 1a0eA 443 59.66 c.1.15.3 29537 1unkA 87 59.84 a.28.2.1 16935 1r69A 69 60.09 a.35.1.2 17028 1zgwA 139 60.99 1oktA 211 61.52 a.45.1.1,c.47.1.5 93272,93273 1gcvA 140 64.60 a.1.1.2 15410 1wdvA 152 65.54 d.116.1.1 114539 1cei 94 65.68 1kgsA 225 65.94 a.4.6.1,c.23.1.1 68596,68597 2blfA 373 67.62 1jj2U 70 67.99 a.2.2.1 63106 1xqrA 296 68.23 a.118.1.21 122241 1qpzA 340 68.67 a.35.1.5,c.93.1.1 17097,35673 2r1jL 68 69.75 2h12A 436 70.27 2q88A 257 70.61 2a9dA 372 70.70 b.1.18.6,d.176.1.1 126431,126432 2fbkA 181 70.73 a.4.5.28 133247 1dm1A 146 70.77 a.1.1.2 15153 2oa6A 320 70.88 2z1dA 372 71.14 1k2xA 177 71.97 d.153.1.5 90929 3c8yA 574 73.36 2gauA 232 73.44 a.4.5.4,b.82.3.2 134894,134895 2a8lA 420 74.92 1nfp 228 76.31 1ppjC 379 76.69 f.32.1.1,f.21.1.2 104256,104257 2d0eA 407 79.51 2ivmA 150 79.80 1aw9A 216 80.92 a.45.1.1,c.47.1.5 17736,33030 2is9A 204 80.94 3bofA 566 81.60 2e60A 101 82.66 1y9qA 192 83.10 a.35.1.8,b.82.1.15 116592,116593 1vpwA 340 83.82 a.35.1.5,c.93.1.1 17087,35680 1hqoA 258 84.44 a.45.1.1,c.47.1.5 17749,33043 2yxoA 267 86.12 1i0aA 466 86.18 a.127.1.1 61479 2ebyA 113 86.23 2d1eA 248 87.19 1alvA 173 87.49 a.39.1.8 17370 1b48A 221 88.16 a.45.1.1,c.47.1.5 17703,32997 1mvwB 145 88.86 i.15.1.1 79524 1adrA 76 89.00 a.35.1.2 17042 1j5yA 187 89.61 a.4.5.1,d.94.2.1 71592,71593 1hcrA 52 89.91 a.4.1.2 16020