# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2f07A 197 6.24e-22 3bhqA 211 1.20e-21 1rktA 205 1.32e-21 a.4.1.9,a.121.1.1 97623,97624 2pbxA 203 1.75e-21 1pb6A 212 2.11e-21 a.4.1.9,a.121.1.1 88017,88018 3bruA 222 2.17e-21 2uxuA 210 2.50e-21 3bcgA 215 2.58e-21 1vi0A 206 2.78e-21 a.4.1.9,a.121.1.1 100720,100721 2id6A 202 5.55e-21 2g7sA 194 6.27e-21 a.4.1.9,a.121.1.1 134737,134738 1z77A 200 1.04e-20 a.4.1.9,a.121.1.1 124588,124589 1t56A 216 1.08e-20 a.4.1.9,a.121.1.1 106428,106429 1zkgA 212 1.14e-20 a.4.1.9,a.121.1.1 125194,125195 2g3bA 208 1.25e-20 a.4.1.9,a.121.1.1 134558,134559 2rasA 212 1.55e-20 2hyjA 200 1.66e-20 2ibdA 204 1.72e-20 2hytA 197 1.80e-20 2i10A 202 2.23e-20 a.4.1.9,a.121.1.1 136960,136961 2fx0A 201 2.91e-20 a.4.1.9,a.121.1.1 134269,134270 3crjA 199 2.98e-20 3ccyA 203 3.36e-20 2iekA 200 4.41e-20 2jj7A 186 4.56e-20 2fq4A 192 4.67e-20 a.4.1.9,a.121.1.1 133937,133938 2qtqA 213 5.80e-20 2dg7A 195 6.67e-20 3cwrA 208 6.78e-20 2genA 197 7.11e-20 a.4.1.9,a.121.1.1 135062,135063 2iaiA 230 7.93e-20 2nx4A 194 1.07e-19 2qcoA 210 1.23e-19 3cjdA 198 1.33e-19 2fbqA 235 2.16e-19 a.4.1.9,a.121.1.1 133256,133257 1qvtA 194 2.28e-19 a.4.1.9,a.121.1.1 104602,104603 3cdlA 203 2.50e-19 1ui5A 215 3.15e-19 a.4.1.9,a.121.1.1 107856,107857 2raeA 207 3.85e-19 2zb9A 214 4.46e-19 2of7A 260 6.20e-19 3b81A 203 6.90e-19 3c2bA 221 7.36e-19 1jt6A 188 8.01e-19 a.4.1.9,a.121.1.1 67247,67248 2np5A 203 2.09e-18 a.4.1.9,a.121.1.1 138424,138425 2qibA 231 3.07e-18 3colA 196 3.15e-18 2guhA 214 4.52e-18 2d6yA 202 4.91e-18 a.4.1.9,a.121.1.1 131313,131314 2o7tA 199 5.80e-18 2q24A 194 5.97e-18 1sgmA 191 8.92e-18 a.4.1.9,a.121.1.1 105537,105538 2rekA 199 1.06e-17 2eh3A 179 1.39e-17 2yveA 185 1.47e-17 2fd5A 180 1.80e-17 a.4.1.9,a.121.1.1 133291,133292 2dg8A 193 1.89e-17 3bjbA 207 1.92e-17 1v7bA 185 2.15e-17 a.4.1.9,a.121.1.1 119861,119862 2qwtA 196 2.27e-17 2hkuA 215 4.24e-17 1t33A 224 5.34e-17 a.4.1.9,a.121.1.1 106295,106296 1zk8A 183 6.94e-17 a.4.1.9,a.121.1.1 125177,125178 1a6i 217 1.22e-16 3bniA 229 1.47e-16 2gfnA 209 1.91e-16 a.4.1.9,a.121.1.1 135101,135102 2o7oA 207 2.13e-16 a.4.1.9,a.121.1.1 138930,138931 3bqyA 209 2.46e-16 2vprA 207 6.86e-16 2zcmA 192 8.62e-16 2iu5A 195 1.01e-15 2oi8A 216 1.05e-15 1z0xA 220 1.86e-15 a.4.1.9,a.121.1.1 124334,124335 2qkoA 215 1.08e-14 2g7lA 243 1.46e-14 a.4.1.9,a.121.1.1 134734,134735 2id3A 225 1.90e-14 a.4.1.9,a.121.1.1 137261,137262 2tct 207 2.41e-14 2optA 234 6.93e-14 2oerA 214 1.00e-12 2hxoA 237 1.46e-12 2g7gA 213 1.23e-09 a.4.1.9,a.121.1.1 134732,134733 3bbyA 215 3.065 2gsqA 202 4.137 a.45.1.1,c.47.1.5 17715,33009 1gulA 222 4.432 a.45.1.1,c.47.1.5 17675,32969 1gwcA 230 4.436 a.45.1.1,c.47.1.5 70660,70661 2oxoA 103 4.872 1k3yA 221 6.431 a.45.1.1,c.47.1.5 77245,77246 1gseA 221 8.730 a.45.1.1,c.47.1.5 17667,32961 1vf1A 229 8.937 1f3aA 222 9.480 a.45.1.1,c.47.1.5 17701,32995 2on5A 206 10.32 1qnrA 344 10.50 c.1.8.3 28834 2pg4A 95 12.80 1b48A 221 13.89 a.45.1.1,c.47.1.5 17703,32997 6paxA 133 14.61 a.4.1.5,a.4.1.5 64758,64759 2ev0A 142 14.93 a.4.5.24,a.76.1.1 132413,132414 1pdnC 128 16.15 a.4.1.5 16047 1m0uA 249 18.63 a.45.1.1,c.47.1.5 78359,78360 1oe8A 211 20.21 a.45.1.1,c.47.1.5 86905,86906 1fw1A 216 20.69 a.45.1.1,c.47.1.5 60051,60052 1iyhA 198 20.72 a.45.1.1,c.47.1.5 83790,83791 1hg5A 289 21.30 a.7.8.2,a.118.9.3 90360,90361 1on2A 142 22.50 a.4.5.24,a.76.1.1 87103,87104 2dt5A 211 22.55 a.4.5.38,c.2.1.12 131708,131709 2imiA 221 23.58 2bvyA 475 25.20 b.1.18.2,c.1.8.3 129301,129302 1ho8A 480 27.34 a.118.1.9 61107 1glqA 209 28.28 a.45.1.1,c.47.1.5 17588,32882 1m12A 84 28.64 a.64.1.1 84745 2jn6A 97 29.17 1cjgA 62 30.87 a.35.1.5 17112 1cbyA 259 34.17 d.103.1.1 40705 1lccA 51 35.25 a.35.1.5 17110 1v2aA 210 40.47 a.45.1.1,c.47.1.5 100263,100264 1pveA 72 41.17 a.189.1.1 104322 1zcaA 359 41.61 a.66.1.1,c.37.1.8 124897,124898 1pgtA 210 42.47 a.45.1.1,c.47.1.5 17515,32809 1oqyA 368 42.58 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 2bjcA 62 46.57 a.35.1.5 128620 1a0eA 443 49.34 c.1.15.3 29537 1ea2A 131 50.01 d.17.4.3 64860 2yxoA 267 50.49 1edg 380 51.20 2q0zX 339 51.63 1b37B 472 54.11 c.3.1.2,d.16.1.5 30390,37954 1nstA 325 54.51 c.37.1.5 31951 3b7hA 78 55.04 2gsoA 393 56.02 2bnmA 198 57.74 a.35.1.3,b.82.1.10 128835,128836 2cohA 202 59.85 a.4.5.4,b.82.3.2 130677,130678 2osxA 481 60.76 1dm1A 146 61.73 a.1.1.2 15153 2cz2A 223 63.32 1f2eA 201 66.97 a.45.1.1,c.47.1.5 17745,33039 2je8A 848 68.34 1i6xA 209 69.52 a.4.5.4,b.82.3.2 83673,83674 2zcwA 202 70.83 2ve3A 444 74.44 1rzsA 61 75.19 a.35.1.2 105139 1fj2A 232 76.60 c.69.1.14 34720 3bs3A 76 76.77 1b0nA 111 76.99 a.34.1.1,a.35.1.3 17001,17064 2ig3A 127 77.91 3cmgA 667 80.42 2scpA 174 80.48 a.39.1.5 17256 1hlvA 131 81.31 a.4.1.7,a.4.1.7 65854,65855 2hq1A 247 83.12 1hqoA 258 85.00 a.45.1.1,c.47.1.5 17749,33043 1ush 550 86.16 2javA 279 87.73 d.144.1.7 138243 1n82A 331 88.11 c.1.8.3 91703