# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 2.36e-23 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 5.08e-23 2id6A 202 5.11e-23 3bhqA 211 5.43e-23 1rktA 205 6.34e-23 a.4.1.9,a.121.1.1 97623,97624 2f07A 197 6.63e-23 1zkgA 212 1.14e-22 a.4.1.9,a.121.1.1 125194,125195 3bruA 222 1.29e-22 1pb6A 212 1.35e-22 a.4.1.9,a.121.1.1 88017,88018 2ibdA 204 1.86e-22 1z77A 200 1.99e-22 a.4.1.9,a.121.1.1 124588,124589 2rasA 212 2.09e-22 2g7sA 194 2.25e-22 a.4.1.9,a.121.1.1 134737,134738 2iekA 200 2.31e-22 2uxuA 210 2.83e-22 3ccyA 203 3.02e-22 2hyjA 200 3.69e-22 2i10A 202 3.73e-22 a.4.1.9,a.121.1.1 136960,136961 3crjA 199 4.76e-22 3bcgA 215 5.25e-22 3cwrA 208 6.74e-22 2jj7A 186 8.26e-22 2fx0A 201 9.81e-22 a.4.1.9,a.121.1.1 134269,134270 1t56A 216 1.14e-21 a.4.1.9,a.121.1.1 106428,106429 1qvtA 194 1.27e-21 a.4.1.9,a.121.1.1 104602,104603 2qcoA 210 1.35e-21 2g3bA 208 1.36e-21 a.4.1.9,a.121.1.1 134558,134559 2hytA 197 1.50e-21 2fq4A 192 2.08e-21 a.4.1.9,a.121.1.1 133937,133938 2dg7A 195 2.31e-21 1jt6A 188 3.66e-21 a.4.1.9,a.121.1.1 67247,67248 2genA 197 3.83e-21 a.4.1.9,a.121.1.1 135062,135063 2iaiA 230 4.55e-21 2qtqA 213 4.59e-21 1ui5A 215 5.14e-21 a.4.1.9,a.121.1.1 107856,107857 2raeA 207 7.36e-21 2nx4A 194 8.99e-21 2fbqA 235 9.68e-21 a.4.1.9,a.121.1.1 133256,133257 2of7A 260 1.35e-20 3cdlA 203 2.07e-20 3c2bA 221 2.83e-20 3b81A 203 3.00e-20 2zb9A 214 3.40e-20 2o7tA 199 3.78e-20 2np5A 203 4.77e-20 a.4.1.9,a.121.1.1 138424,138425 2yveA 185 5.42e-20 2q24A 194 5.52e-20 2dg8A 193 6.03e-20 2eh3A 179 6.70e-20 3cjdA 198 7.75e-20 3colA 196 8.41e-20 2hkuA 215 8.52e-20 2fd5A 180 1.51e-19 a.4.1.9,a.121.1.1 133291,133292 2o7oA 207 1.83e-19 a.4.1.9,a.121.1.1 138930,138931 2iu5A 195 1.85e-19 2qibA 231 2.26e-19 1sgmA 191 2.60e-19 a.4.1.9,a.121.1.1 105537,105538 2rekA 199 3.81e-19 2d6yA 202 3.87e-19 a.4.1.9,a.121.1.1 131313,131314 3bjbA 207 4.84e-19 3bniA 229 5.65e-19 1v7bA 185 6.13e-19 a.4.1.9,a.121.1.1 119861,119862 3bqyA 209 7.53e-19 2guhA 214 7.75e-19 1a6i 217 1.28e-18 1t33A 224 1.82e-18 a.4.1.9,a.121.1.1 106295,106296 1zk8A 183 1.89e-18 a.4.1.9,a.121.1.1 125177,125178 2vprA 207 2.10e-18 2qwtA 196 3.93e-18 2qkoA 215 6.11e-18 2oi8A 216 1.38e-17 2zcmA 192 2.00e-17 2gfnA 209 2.35e-17 a.4.1.9,a.121.1.1 135101,135102 1z0xA 220 4.86e-17 a.4.1.9,a.121.1.1 124334,124335 2oerA 214 5.33e-16 2g7lA 243 7.01e-16 a.4.1.9,a.121.1.1 134734,134735 2tct 207 9.25e-16 2optA 234 1.12e-15 2hxoA 237 2.35e-15 2id3A 225 2.46e-14 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 9.02e-12 a.4.1.9,a.121.1.1 134732,134733 2pg4A 95 1.496 2jn6A 97 1.497 2bnmA 198 1.506 a.35.1.3,b.82.1.10 128835,128836 2dt5A 211 1.846 a.4.5.38,c.2.1.12 131708,131709 3bbyA 215 1.861 1hlvA 131 1.874 a.4.1.7,a.4.1.7 65854,65855 2ev0A 142 1.991 a.4.5.24,a.76.1.1 132413,132414 6paxA 133 2.071 a.4.1.5,a.4.1.5 64758,64759 1c0wA 225 2.120 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 1lccA 51 3.204 a.35.1.5 17110 1cjgA 62 3.725 a.35.1.5 17112 2hpkA 208 3.797 2oxoA 103 3.797 1pdnC 128 4.074 a.4.1.5 16047 3b7hA 78 4.608 1a5t 334 5.944 2bjcA 62 5.972 a.35.1.5 128620 1xcbA 211 6.239 a.4.5.38,c.2.1.12 109552,109553 1gwcA 230 6.254 a.45.1.1,c.47.1.5 70660,70661 1s7oA 113 8.022 a.4.13.3 105354 1gulA 222 8.388 a.45.1.1,c.47.1.5 17675,32969 1bi0 226 8.940 3bs3A 76 10.87 2o3fA 111 13.24 2pjpA 121 13.96 2qq9A 226 14.28 1on2A 142 15.15 a.4.5.24,a.76.1.1 87103,87104 1jkoC 52 15.17 a.4.1.2 66809 1fseA 74 15.58 a.4.6.2 60000 1zr5A 214 16.15 c.50.1.2 125525 1utxA 66 17.28 a.35.1.3 108034 1jj2U 70 19.13 a.2.2.1 63106 2aelA 374 20.25 1zljA 78 20.62 2auwA 170 21.83 a.35.1.10,d.331.1.1 127339,127340 2ictA 94 22.83 1neqA 74 25.91 a.35.1.2 17063 1u8bA 133 26.19 1f3aA 222 26.51 a.45.1.1,c.47.1.5 17701,32995 1y9qA 192 27.86 a.35.1.8,b.82.1.15 116592,116593 1je8A 82 28.48 a.4.6.2 77108 1r69A 69 28.90 a.35.1.2 17028 1k0dA 260 29.71 a.45.1.1,c.47.1.5 67930,67931 1rzsA 61 29.92 a.35.1.2 105139 2dtrA 226 30.49 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1ret 43 31.24 2croA 71 31.61 a.35.1.2 17038 2cro 71 32.26 2scpA 174 33.25 a.39.1.5 17256 1y0uA 96 34.87 a.4.5.5 116310 1b0nA 111 35.58 a.34.1.1,a.35.1.3 17001,17064 1hg5A 289 36.04 a.7.8.2,a.118.9.3 90360,90361 1vf1A 229 36.20 1w07A 659 36.25 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 3bzcA 785 36.43 2q7eA 291 36.45 1k3yA 221 36.71 a.45.1.1,c.47.1.5 77245,77246 1p4wA 99 37.83 a.4.6.2 87783 1l7vA 326 38.14 f.22.1.1 73672 1wsuA 124 39.15 a.4.5.35,a.4.5.35 121245,121246 1f5tA 121 40.70 a.4.5.24,a.76.1.1 16203,18409 1oqyA 368 42.50 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1ehiA 377 43.14 c.30.1.2,d.142.1.1 31716,41484 1y7yA 74 43.37 a.35.1.3 122729 2b5aA 77 44.10 a.35.1.3 127882 3bct 457 46.21 1vz0A 230 47.03 a.4.14.1,d.268.1.1 108929,108930 2on5A 206 49.02 2ebyA 113 49.31 1wpkA 146 51.98 1m0uA 249 52.28 a.45.1.1,c.47.1.5 78359,78360 1mmoB 384 52.55 a.25.1.2 16768 1v2aA 210 53.38 a.45.1.1,c.47.1.5 100263,100264 2blfA 373 53.45 1sedA 117 54.48 a.219.1.1 105449 1s69A 124 54.87 a.1.1.1 105305 2e60A 101 58.26 1r69 69 58.59 1ngkA 128 59.05 a.1.1.1 85673 1tqmA 282 60.38 a.4.5.56,d.144.1.9 107236,107237 1ho8A 480 60.43 a.118.1.9 61107 1qpzA 340 60.44 a.35.1.5,c.93.1.1 17097,35673 2h12A 436 61.19 2r1jL 68 61.34 1es4A 262 61.78 e.3.1.1 42683 1k2xA 177 61.86 d.153.1.5 90929 1jftA 340 62.73 a.35.1.5,c.93.1.1 66652,66653 1bl0A 129 62.95 a.4.1.8,a.4.1.8 16053,16054 1jr3A 373 63.49 a.80.1.1,c.37.1.20 63245,63246 1tadA 324 65.18 a.66.1.1,c.37.1.8 18194,32077 2gsqA 202 66.70 a.45.1.1,c.47.1.5 17715,33009 3cecA 104 67.02 1fw1A 216 68.99 a.45.1.1,c.47.1.5 60051,60052 2ivmA 150 70.79 2a8lA 420 72.22 3bofA 566 73.06 2qz8A 149 74.59 1dlyA 164 74.66 a.1.1.1 14983 2yxoA 267 74.79 2q7wA 396 76.16 3bq3A 270 76.28 1k78A 149 76.47 a.4.1.5,a.4.1.5 68255,68256 2a9dA 372 78.97 b.1.18.6,d.176.1.1 126431,126432 1r1uA 106 79.48 a.4.5.5 104771 1d2rA 326 79.66 c.26.1.1 31572 1iqpA 327 80.14 a.80.1.1,c.37.1.20 62649,62650 1efaA 333 80.65 a.35.1.5,c.93.1.1 17106,35691 1adrA 76 81.52 a.35.1.2 17042 1vpwA 340 81.56 a.35.1.5,c.93.1.1 17087,35680 1jlwA 219 82.43 a.45.1.1,c.47.1.5 71741,71742 2f4mB 61 82.61 a.189.1.1 132931 3c8yA 574 82.77 1wdvA 152 84.10 d.116.1.1 114539 2cohA 202 85.53 a.4.5.4,b.82.3.2 130677,130678 2dbbA 151 86.67 1es2A 262 86.99 e.3.1.1 42680 1zy9A 564 87.07 b.30.5.11,c.1.8.13 125813,125814 2g1kA 176 87.26 c.37.1.2 134519 2h09A 155 87.73 1a0eA 443 87.94 c.1.15.3 29537 2f6rA 281 89.54 1b1bA 140 89.97 a.4.5.24,a.76.1.1 16215,18421