# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 2.84e-22 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 3.93e-22 3bhqA 211 5.11e-22 2f07A 197 5.65e-22 1rktA 205 5.94e-22 a.4.1.9,a.121.1.1 97623,97624 2id6A 202 6.25e-22 1zkgA 212 8.36e-22 a.4.1.9,a.121.1.1 125194,125195 2uxuA 210 9.64e-22 3bruA 222 1.02e-21 3bcgA 215 1.18e-21 2rasA 212 1.25e-21 2ibdA 204 1.47e-21 1pb6A 212 1.49e-21 a.4.1.9,a.121.1.1 88017,88018 1z77A 200 1.61e-21 a.4.1.9,a.121.1.1 124588,124589 2g7sA 194 1.79e-21 a.4.1.9,a.121.1.1 134737,134738 3cwrA 208 1.80e-21 3ccyA 203 2.23e-21 2i10A 202 2.64e-21 a.4.1.9,a.121.1.1 136960,136961 2hyjA 200 2.86e-21 2iekA 200 3.68e-21 3crjA 199 3.85e-21 2g3bA 208 3.96e-21 a.4.1.9,a.121.1.1 134558,134559 2qcoA 210 4.56e-21 1t56A 216 6.16e-21 a.4.1.9,a.121.1.1 106428,106429 2dg7A 195 8.00e-21 2fq4A 192 8.93e-21 a.4.1.9,a.121.1.1 133937,133938 2genA 197 1.26e-20 a.4.1.9,a.121.1.1 135062,135063 2fx0A 201 1.28e-20 a.4.1.9,a.121.1.1 134269,134270 1qvtA 194 1.53e-20 a.4.1.9,a.121.1.1 104602,104603 2nx4A 194 1.81e-20 2jj7A 186 1.83e-20 2hytA 197 2.17e-20 2iaiA 230 2.27e-20 3cjdA 198 2.33e-20 2of7A 260 2.48e-20 2qtqA 213 2.51e-20 2raeA 207 2.55e-20 1jt6A 188 3.22e-20 a.4.1.9,a.121.1.1 67247,67248 2fbqA 235 3.77e-20 a.4.1.9,a.121.1.1 133256,133257 3cdlA 203 4.82e-20 2zb9A 214 5.56e-20 2yveA 185 5.72e-20 1ui5A 215 5.97e-20 a.4.1.9,a.121.1.1 107856,107857 2dg8A 193 1.09e-19 3b81A 203 1.28e-19 2eh3A 179 1.91e-19 3c2bA 221 1.94e-19 2np5A 203 2.83e-19 a.4.1.9,a.121.1.1 138424,138425 2o7tA 199 3.18e-19 2q24A 194 3.36e-19 2hkuA 215 3.85e-19 2o7oA 207 4.54e-19 a.4.1.9,a.121.1.1 138930,138931 3colA 196 4.76e-19 1sgmA 191 7.85e-19 a.4.1.9,a.121.1.1 105537,105538 2qibA 231 8.35e-19 2iu5A 195 1.03e-18 2guhA 214 1.07e-18 3bjbA 207 1.15e-18 2fd5A 180 1.29e-18 a.4.1.9,a.121.1.1 133291,133292 3bqyA 209 1.79e-18 3bniA 229 2.19e-18 1v7bA 185 2.21e-18 a.4.1.9,a.121.1.1 119861,119862 2d6yA 202 2.29e-18 a.4.1.9,a.121.1.1 131313,131314 1zk8A 183 2.77e-18 a.4.1.9,a.121.1.1 125177,125178 1a6i 217 3.03e-18 2rekA 199 3.06e-18 1t33A 224 6.08e-18 a.4.1.9,a.121.1.1 106295,106296 2vprA 207 6.13e-18 2qwtA 196 1.16e-17 2gfnA 209 2.87e-17 a.4.1.9,a.121.1.1 135101,135102 2oi8A 216 2.99e-17 2qkoA 215 4.58e-17 2zcmA 192 1.21e-16 1z0xA 220 3.42e-16 a.4.1.9,a.121.1.1 124334,124335 2oerA 214 5.60e-16 2g7lA 243 1.17e-15 a.4.1.9,a.121.1.1 134734,134735 2optA 234 4.83e-15 2tct 207 6.38e-15 2hxoA 237 1.50e-14 2id3A 225 7.75e-14 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 6.68e-11 a.4.1.9,a.121.1.1 134732,134733 2ev0A 142 1.142 a.4.5.24,a.76.1.1 132413,132414 1c0wA 225 1.809 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 1on2A 142 4.774 a.4.5.24,a.76.1.1 87103,87104 1f3aA 222 4.824 a.45.1.1,c.47.1.5 17701,32995 3bbyA 215 4.985 2jn6A 97 5.612 2dt5A 211 6.399 a.4.5.38,c.2.1.12 131708,131709 2oxoA 103 7.012 2bnmA 198 7.187 a.35.1.3,b.82.1.10 128835,128836 2pg4A 95 7.512 1vf1A 229 7.731 6paxA 133 8.836 a.4.1.5,a.4.1.5 64758,64759 1gulA 222 8.924 a.45.1.1,c.47.1.5 17675,32969 1lccA 51 10.15 a.35.1.5 17110 1k3yA 221 10.18 a.45.1.1,c.47.1.5 77245,77246 2qq9A 226 12.53 1hlvA 131 12.57 a.4.1.7,a.4.1.7 65854,65855 1a5t 334 12.76 1pdnC 128 13.04 a.4.1.5 16047 1xcbA 211 13.16 a.4.5.38,c.2.1.12 109552,109553 2pjpA 121 14.09 2bjcA 62 14.23 a.35.1.5 128620 1gwcA 230 14.44 a.45.1.1,c.47.1.5 70660,70661 1oqyA 368 14.52 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1ho8A 480 14.83 a.118.1.9 61107 1cjgA 62 17.56 a.35.1.5 17112 1oe8A 211 17.60 a.45.1.1,c.47.1.5 86905,86906 1oktA 211 17.81 a.45.1.1,c.47.1.5 93272,93273 1gseA 221 17.83 a.45.1.1,c.47.1.5 17667,32961 1jkoC 52 17.86 a.4.1.2 66809 2dtrA 226 20.78 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2ig3A 127 21.17 1w07A 659 21.28 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1bi0 226 23.22 3bzcA 785 23.22 1m0uA 249 23.40 a.45.1.1,c.47.1.5 78359,78360 2fbkA 181 24.07 a.4.5.28 133247 1yn9A 169 24.69 1bl0A 129 25.52 a.4.1.8,a.4.1.8 16053,16054 2gsqA 202 28.12 a.45.1.1,c.47.1.5 17715,33009 1b1bA 140 29.00 a.4.5.24,a.76.1.1 16215,18421 2bbrA 195 31.27 2hpkA 208 31.54 1iyhA 198 32.82 a.45.1.1,c.47.1.5 83790,83791 1ret 43 34.54 1tadA 324 36.72 a.66.1.1,c.37.1.8 18194,32077 2blfA 373 37.01 1pveA 72 37.07 a.189.1.1 104322 1kgsA 225 39.25 a.4.6.1,c.23.1.1 68596,68597 1mc3A 296 39.95 c.68.1.6 78943 1fseA 74 40.56 a.4.6.2 60000 1hg5A 289 40.71 a.7.8.2,a.118.9.3 90360,90361 1wpkA 146 42.30 1b48A 221 44.18 a.45.1.1,c.47.1.5 17703,32997 2sttA 96 45.28 a.4.5.21 16163 1cei 94 45.37 1pgtA 210 45.62 a.45.1.1,c.47.1.5 17515,32809 1neqA 74 47.16 a.35.1.2 17063 1k3kA 158 48.16 f.1.4.1 72017 1zljA 78 49.12 1jj2U 70 50.25 a.2.2.1 63106 2e9xA 149 51.13 1fr2A 86 51.80 a.28.2.1 83256 1iqpA 327 55.88 a.80.1.1,c.37.1.20 62649,62650 2ntoA 201 58.44 1fx7A 230 61.92 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 3bs3A 76 62.38 2cw8A 537 62.39 3b7hA 78 62.81 1goxA 369 63.32 c.1.4.1 28607 2h09A 155 64.39 1lea 84 66.48 1p4wA 99 67.28 a.4.6.2 87783 1s7oA 113 67.61 a.4.13.3 105354 1vh0A 161 69.01 c.116.1.3 100626 1je8A 82 69.62 a.4.6.2 77108 1unkA 87 69.64 a.28.2.1 16935 1g73A 162 69.97 a.7.4.1 16332 2b8wA 328 71.03 1alvA 173 72.87 a.39.1.8 17370 2scpA 174 74.02 a.39.1.5 17256 1wsuA 124 75.05 a.4.5.35,a.4.5.35 121245,121246 1fewA 184 75.41 a.7.4.1 16334 1oyiA 82 78.75 a.4.5.19 93729 1c14A 262 80.69 c.2.1.2 29927 1nstA 325 81.33 c.37.1.5 31951 2hm2Q 89 81.44 1tlqA 189 82.37 a.195.1.1 107134 1kxrA 339 85.90 d.3.1.3 73175 3cbuA 214 86.33 1utxA 66 86.47 a.35.1.3 108034 1y9qA 192 86.93 a.35.1.8,b.82.1.15 116592,116593 1rzsA 61 87.72 a.35.1.2 105139 2ictA 94 89.65