# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rktA 205 2.67e-21 a.4.1.9,a.121.1.1 97623,97624 1vi0A 206 2.77e-21 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 3.06e-21 2id6A 202 3.41e-21 3bhqA 211 4.06e-21 2f07A 197 4.30e-21 1zkgA 212 4.84e-21 a.4.1.9,a.121.1.1 125194,125195 2uxuA 210 6.04e-21 3bruA 222 6.37e-21 3bcgA 215 8.95e-21 1z77A 200 9.02e-21 a.4.1.9,a.121.1.1 124588,124589 2ibdA 204 1.09e-20 1pb6A 212 1.12e-20 a.4.1.9,a.121.1.1 88017,88018 2g7sA 194 1.34e-20 a.4.1.9,a.121.1.1 134737,134738 2rasA 212 1.40e-20 3cwrA 208 1.43e-20 2hyjA 200 1.54e-20 2i10A 202 1.77e-20 a.4.1.9,a.121.1.1 136960,136961 3ccyA 203 1.85e-20 2iekA 200 1.86e-20 3crjA 199 2.20e-20 2g3bA 208 2.24e-20 a.4.1.9,a.121.1.1 134558,134559 2qcoA 210 3.10e-20 2fx0A 201 3.77e-20 a.4.1.9,a.121.1.1 134269,134270 1t56A 216 4.09e-20 a.4.1.9,a.121.1.1 106428,106429 2fq4A 192 6.84e-20 a.4.1.9,a.121.1.1 133937,133938 1qvtA 194 7.18e-20 a.4.1.9,a.121.1.1 104602,104603 2genA 197 7.21e-20 a.4.1.9,a.121.1.1 135062,135063 2jj7A 186 8.85e-20 2qtqA 213 9.54e-20 2hytA 197 1.01e-19 2dg7A 195 1.02e-19 2iaiA 230 1.16e-19 2nx4A 194 1.27e-19 3cjdA 198 1.38e-19 1jt6A 188 1.48e-19 a.4.1.9,a.121.1.1 67247,67248 2raeA 207 1.67e-19 2zb9A 214 1.94e-19 2of7A 260 2.11e-19 3cdlA 203 2.47e-19 1ui5A 215 2.91e-19 a.4.1.9,a.121.1.1 107856,107857 2fbqA 235 4.99e-19 a.4.1.9,a.121.1.1 133256,133257 3b81A 203 6.43e-19 3c2bA 221 7.22e-19 2eh3A 179 8.89e-19 2dg8A 193 9.77e-19 2hkuA 215 1.19e-18 2yveA 185 1.29e-18 2np5A 203 1.48e-18 a.4.1.9,a.121.1.1 138424,138425 2q24A 194 1.51e-18 3colA 196 2.15e-18 2o7tA 199 2.70e-18 2o7oA 207 3.44e-18 a.4.1.9,a.121.1.1 138930,138931 1sgmA 191 3.85e-18 a.4.1.9,a.121.1.1 105537,105538 2qibA 231 4.93e-18 3bjbA 207 5.69e-18 2fd5A 180 5.87e-18 a.4.1.9,a.121.1.1 133291,133292 2iu5A 195 7.06e-18 2guhA 214 7.89e-18 3bqyA 209 1.02e-17 2d6yA 202 1.10e-17 a.4.1.9,a.121.1.1 131313,131314 2rekA 199 1.17e-17 3bniA 229 1.20e-17 1v7bA 185 1.25e-17 a.4.1.9,a.121.1.1 119861,119862 1a6i 217 1.53e-17 1t33A 224 1.97e-17 a.4.1.9,a.121.1.1 106295,106296 1zk8A 183 2.34e-17 a.4.1.9,a.121.1.1 125177,125178 2vprA 207 2.49e-17 2qwtA 196 4.79e-17 2gfnA 209 6.91e-17 a.4.1.9,a.121.1.1 135101,135102 2oi8A 216 2.32e-16 2qkoA 215 2.39e-16 2zcmA 192 7.33e-16 1z0xA 220 1.29e-15 a.4.1.9,a.121.1.1 124334,124335 2oerA 214 1.98e-15 2g7lA 243 3.78e-15 a.4.1.9,a.121.1.1 134734,134735 2optA 234 9.32e-15 2tct 207 1.69e-14 2hxoA 237 3.35e-14 2id3A 225 8.08e-14 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 5.61e-11 a.4.1.9,a.121.1.1 134732,134733 2ev0A 142 0.8448 a.4.5.24,a.76.1.1 132413,132414 2dt5A 211 2.037 a.4.5.38,c.2.1.12 131708,131709 2jn6A 97 2.218 2bnmA 198 2.310 a.35.1.3,b.82.1.10 128835,128836 1c0wA 225 2.311 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2pg4A 95 2.496 1on2A 142 2.516 a.4.5.24,a.76.1.1 87103,87104 6paxA 133 3.188 a.4.1.5,a.4.1.5 64758,64759 1xcbA 211 3.224 a.4.5.38,c.2.1.12 109552,109553 2oxoA 103 3.232 1lccA 51 4.226 a.35.1.5 17110 3bbyA 215 5.272 1hlvA 131 5.365 a.4.1.7,a.4.1.7 65854,65855 1a5t 334 5.880 1pdnC 128 6.030 a.4.1.5 16047 1jkoC 52 7.122 a.4.1.2 66809 1f3aA 222 7.382 a.45.1.1,c.47.1.5 17701,32995 1gulA 222 7.402 a.45.1.1,c.47.1.5 17675,32969 2pjpA 121 7.776 2bjcA 62 8.065 a.35.1.5 128620 1vf1A 229 8.347 1cjgA 62 8.789 a.35.1.5 17112 1k3yA 221 9.911 a.45.1.1,c.47.1.5 77245,77246 1gwcA 230 12.89 a.45.1.1,c.47.1.5 70660,70661 1fseA 74 13.22 a.4.6.2 60000 3b7hA 78 13.89 2qq9A 226 15.52 2hpkA 208 16.11 1zljA 78 16.12 1neqA 74 16.19 a.35.1.2 17063 2ig3A 127 16.53 1gseA 221 17.16 a.45.1.1,c.47.1.5 17667,32961 2blfA 373 17.25 1s7oA 113 17.26 a.4.13.3 105354 3bs3A 76 17.35 1wpkA 146 17.82 1oktA 211 17.84 a.45.1.1,c.47.1.5 93272,93273 1oe8A 211 19.35 a.45.1.1,c.47.1.5 86905,86906 3bzcA 785 19.87 1tadA 324 19.95 a.66.1.1,c.37.1.8 18194,32077 2gsqA 202 20.15 a.45.1.1,c.47.1.5 17715,33009 1w07A 659 21.01 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1wsuA 124 21.42 a.4.5.35,a.4.5.35 121245,121246 1ho8A 480 21.87 a.118.1.9 61107 1yn9A 169 22.98 1bl0A 129 23.72 a.4.1.8,a.4.1.8 16053,16054 1je8A 82 24.23 a.4.6.2 77108 1zr5A 214 25.03 c.50.1.2 125525 1pveA 72 25.33 a.189.1.1 104322 2cdnA 201 25.67 c.37.1.1 130289 1bi0 226 25.78 1b0nA 111 28.54 a.34.1.1,a.35.1.3 17001,17064 1b48A 221 29.05 a.45.1.1,c.47.1.5 17703,32997 1utxA 66 30.05 a.35.1.3 108034 1p4wA 99 30.30 a.4.6.2 87783 1oqyA 368 30.59 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1ret 43 30.90 1lea 84 32.09 1k3kA 158 34.40 f.1.4.1 72017 1u8bA 133 34.81 1y9qA 192 36.11 a.35.1.8,b.82.1.15 116592,116593 2cro 71 36.76 1jj2U 70 37.35 a.2.2.1 63106 1m0uA 249 37.87 a.45.1.1,c.47.1.5 78359,78360 2auwA 170 39.33 a.35.1.10,d.331.1.1 127339,127340 1rzsA 61 39.64 a.35.1.2 105139 2croA 71 40.57 a.35.1.2 17038 2ictA 94 40.97 2a9dA 372 41.67 b.1.18.6,d.176.1.1 126431,126432 2dtrA 226 42.41 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1b1bA 140 43.33 a.4.5.24,a.76.1.1 16215,18421 1iqpA 327 44.40 a.80.1.1,c.37.1.20 62649,62650 1sedA 117 45.67 a.219.1.1 105449 1efaA 333 45.72 a.35.1.5,c.93.1.1 17106,35691 1vz0A 230 46.38 a.4.14.1,d.268.1.1 108929,108930 1rp3A 239 46.98 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 2scpA 174 48.72 a.39.1.5 17256 1hg5A 289 49.41 a.7.8.2,a.118.9.3 90360,90361 1oyiA 82 50.32 a.4.5.19 93729 2h09A 155 50.85 2nrlA 147 52.44 1pgtA 210 52.45 a.45.1.1,c.47.1.5 17515,32809 2j3tD 219 52.50 1vpwA 340 54.09 a.35.1.5,c.93.1.1 17087,35680 2ivmA 150 54.59 2fbkA 181 54.77 a.4.5.28 133247 1iyhA 198 55.46 a.45.1.1,c.47.1.5 83790,83791 1ib2A 349 56.39 a.118.1.8 62141 2dqbA 376 56.65 1jftA 340 58.96 a.35.1.5,c.93.1.1 66652,66653 1y0uA 96 59.55 a.4.5.5 116310 1fx7A 230 59.66 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1r69A 69 61.61 a.35.1.2 17028 1ehiA 377 65.01 c.30.1.2,d.142.1.1 31716,41484 2q7eA 291 66.45 2uuqA 414 68.78 1f5tA 121 69.11 a.4.5.24,a.76.1.1 16203,18409 1g73A 162 69.66 a.7.4.1 16332 2vd8A 391 69.79 2r1jL 68 70.88 2f6rA 281 70.96 1tlqA 189 71.87 a.195.1.1 107134 2q7wA 396 73.08 3c8yA 574 73.73 1vfsA 386 74.65 b.49.2.2,c.1.6.1 108584,108585 1qpzA 340 76.88 a.35.1.5,c.93.1.1 17097,35673 1k0dA 260 77.51 a.45.1.1,c.47.1.5 67930,67931 2p62A 241 80.85 1sfxA 109 81.85 a.4.5.50 105505 1adrA 76 82.01 a.35.1.2 17042 1fr2A 86 83.39 a.28.2.1 83256 1fewA 184 83.40 a.7.4.1 16334 1cei 94 85.55 1zgwA 139 86.19 2b5aA 77 86.31 a.35.1.3 127882 2ebyA 113 86.68 2h12A 436 87.44 1jr3A 373 87.95 a.80.1.1,c.37.1.20 63245,63246 2fbaA 492 89.07 a.102.1.1 133239 1xqrA 296 89.93 a.118.1.21 122241